Aperiodic crystals in biology

Biological systems display a broad palette of hierarchically ordered designs spanning over many orders of magnitude in size. Remarkably enough, periodic order, which profusely shows up in nonliving ordered compounds, plays a quite subsidiary role in most biological structures, which can be appropriately described in terms of the more general aperiodic crystal notion instead. In this Topical Review I shall illustrate this issue by considering several representative examples, including botanical phyllotaxis, the geometry of cell patterns in tissues, the morphology of sea urchins, or the symmetry principles underlying virus architectures. In doing so, we will realize that albeit the currently adopted quasicrystal notion is not general enough to properly account for the rich structural features one usually finds in biological arrangements of matter, several mathematical tools and fundamental notions belonging to the aperiodic crystals science toolkit can provide a useful modeling framework to this end.

Teaching periodicity and aperiodicity using 3D-printed tiles and polyhedra

Unit cell and periodicity are key concepts in crystallography and classically were thought to be inherent properties of ordered media like crystals. Aperiodic crystals (including quasicrystals) forced a change of paradigm, affecting the actual definition of a crystal. However, aperiodicity is usually not taught in crystallography undergraduate courses. The emergence of low-cost 3D-printing technologies makes it possible to tackle hands-on learning of the commonly taught crystallography concepts related to periodicity and to introduce in an uncomplicated manner aperiodic crystals and their related concepts that usually are skipped. In this paper, several examples of the use of 3D printing are shown, including 2D and 3D examples of periodic and aperiodic ordered media; these are particularly useful to understand both conventional periodic crystals and quasicrystals. The STL files of the presented models are made available with the paper.

Ted Janssen and aperiodic crystals

This article reviews some of Ted Janssen's (1936–2017) major contributions to the field of aperiodic crystals. Aperiodic crystals are long-range ordered structures without 3D lattice translations and encompass incommensurately modulated phases, incommensurate composites and quasicrystals. Together with Pim de Wolff and Aloysio Janner, Ted Janssen invented the very elegant theory of superspace crystallography that, by adding a supplementary dimension to the usual 3D space, allows for a deeper understanding of the atomic structure of aperiodic crystals. He also made important contributions to the understanding of the stability and dynamics of aperiodic crystals, exploring their fascinating physical properties. He constantly interacted and collaborated with experimentalists, always ready to share and explain his detailed understanding of aperiodic crystals.

Other topics

The law of rational indices to describe crystal faces was one of the most fundamental law of crystallography and is strongly linked to the three-dimensional periodicity of solids. This chapter describes how this fundamental law has to be revised and generalized in order to include the structures of aperiodic crystals. The generalization consists in using for each face a number of integers, with the number corresponding to the rank of the structure, that is, the number of integer indices necessary to characterize each of the diffracted intensities generated by the aperiodic system. A series of examples including incommensurate multiferroics, icosahedral crystals, and decagonal quaiscrystals illustrates this topic. Aperiodicity is also encountered in surfaces where the same generalization can be applied. The chapter discusses aperiodic crystal morphology, including icosahedral quasicrystal morphology, decagonal quasicrystal morphology, and aperiodic crystal surfaces; magnetic quasiperiodic systems; aperiodic photonic crystals; mesoscopic quasicrystals, and the mineral calaverite.

Description and symmetry of aperiodic crystals

This chapter first introduces the mathematical concept of aperiodic and quasiperiodic functions, which will form the theoretical basis of the superspace description of the new recently discovered forms of matter. They are divided in three groups, namely modulated phases, composites, and quasicrystals. It is shown how the atomic structures and their symmetry can be characterized and described by the new concept. The classification of superspace groups is introduced along with some examples. For quasicrystals, the notion of approximants is also introduced for a better understanding of their structures. Finally, alternatives for the descriptions of the new materials are presented along with scaling symmetries. Magnetic systems and time-reversal symmetry are also introduced.

Physical properties

Physical properties of aperiodic crystals present some theoretical challenges due to the lack of three-dimensional periodicity. For the description of the structure there is a periodic representation in higher-dimensional space. For physical properties, however, this scheme cannot be used because the mapping between interatomic forces and the high-dimensional representation is not straightforward. In this chapter methods are described to deal with these problems. First, the hydrodynamic theory of aperiodic crystals and then the phonons and phasons theory are developed and illustrated with some examples. The properties of electrons in aperiodic crystals are also presented. Finally, the experimental findings of phonon and phason modes for modulated and quasicrystals are presented. The chapter also discusses diffuse scattering, the Debye–Waller factor, and electrical conductivity.