Transmission of Escherichia coli from Manure to Root Zones of Field-Grown Lettuce and Leek Plants

Pathogenic Escherichia coli strains are responsible for food-borne disease outbreaks upon consumption of fresh vegetables and fruits. The aim of this study was to establish the transmission route of E. coli strain 0611, as proxy for human pathogenic E. coli, via manure, soil and plant root zones to the above-soil plant compartments. The ecological behavior of the introduced strain was established by making use of a combination of cultivation-based and molecular targeted and untargeted approaches. Strain 0611 CFUs and specific molecular targets were detected in the root zones of lettuce and leek plants, even up to 272 days after planting in the case of leek plants. However, no strain 0611 colonies were detected in leek leaves, and only in one occasion a single colony was found in lettuce leaves. Therefore, it was concluded that transmission of E. coli via manure is not the principal contamination route to the edible parts of both plant species grown under field conditions in this study. Strain 0611 was shown to accumulate in root zones of both species and metagenomic reads of this strain were retrieved from the lettuce rhizosphere soil metagenome library at a level of Log 4.11 CFU per g dry soil.

Moisture–Conductivity Calibration for Electrical Imaging of Horticultural Substrate

Electrical imaging studies of laboratory- and small-scale plant root zones are gaining increasing attention. However, for essential moisture–conductivity calibrations on numerous substrate columns with variability in dry density, the use of one conventional strategy is relatively laborious or complicated. Thus, in this work, a relatively convenient calibration method is presented, and the objective is to identify its feasibility and potential to assess the effects of factors (e.g., volumetric water content (VWC), and dry density) on conductivity and establish necessary moisture–conductivity curves for porous materials (e.g., soils and substrates). In the method, with a specially designed fixture, variable VWCs, dry densities and related complex conductivities of the samples can be easily acquired through static compaction. The results show that the in-phase conductivity (or magnitude of conductivity) increases with the increasing VWC or dry density, primarily owing to the increase in the dominant pore water connectivity. Moreover, the effect of dry density on conductivity is relatively smaller than that of VWC. Thus, for the substrates at dry densities with certain variability, good power law relations (R2 ≥ 0.99) between in-phase conductivity (or magnitude of conductivity) and VWC at different frequencies can be established. Overall, the proposed approach is practical, promising, and relatively time- and labor-saving.

Plant-Mediated Rhizosphere Oxygenation in the Native Invasive Salt Marsh Grass Elymus athericus

In the last decades, the spread of Elymus athericus has caused significant changes to the plant community composition and ecosystem services of European marshes. The distribution of E. athericus was typically limited by soil conditions characteristic for high marshes, such as low flooding frequency and high soil aeration. However, recently the spread of E. athericus has begun to also include low-marsh environments. A high-marsh ecotype and a low-marsh ecotype of E. athericus have been described, where the latter possess habitat-specific phenotypic traits facilitating a better adaption for inhabiting low-marsh areas. In this study, planar optodes were applied to investigate plant-mediated sediment oxygenation in E. athericus, which is a characteristic trait for marsh plants inhabiting frequently flooded environments. Under waterlogged conditions, oxygen (O2) was translocated from aboveground sources to the roots, where it leaked out into the surrounding sediment generating oxic root zones below the sediment surface. Oxic root zones were clearly visible in the optode images, and no differences were found in the O2-leaking capacity between ecotypes. Concentration profiles measured perpendicular to the roots revealed that the radius of the oxic root zones ranged from 0.5 to 2.6 mm measured from the root surface to the bulk anoxic sediment. The variation of oxic root zones was monitored over three consecutive light–dark cycles (12 h/12 h). The O2 concentration of the oxic root zones was markedly reduced in darkness, yet the sediment still remained oxic in the immediate vicinity of the roots. Increased stomatal conductance improving the access to atmospheric O2 as well as photosynthetic O2 production are likely factors facilitating the improved rhizosphere oxygenation during light exposure of the aboveground biomass. E. athericus’ capacity to oxygenate its rhizosphere is an inheritable trait that may facilitate its spread into low-marsh areas. Furthermore, this trait makes E. athericus a highly competitive species in marshes facing the effects of accelerated sea-level rise, where waterlogged sediment conditions could become increasingly pronounced.

Evaluation of Three Electrochemical Dissolved Oxygen Meters

Dissolved oxygen (DO) is critical for aerobic life in aquatic environments. Rapid and accurate measurements of DO are necessary to quantify the rate of oxygen uptake and maintain optimum conditions in root zones. DO meters are available across a price range of USD99 to more than USD1000. We compared three meters for stability, response time, and accuracy in freshwater [tap water, 0 g⋅L–1 sodium chloride (NaCl)] and saline water (simulated seawater, 35 g⋅L–1 NaCl) across multiple temperatures. The Yellow Springs, Inc. 550A (YSI) and Sper Scientific 850048 (Sper) meters were stable across a range of water temperatures (12–38 °C) and salinity. The Smart Sensor Roeam AR8210 drifted ±50% within minutes after calibration and was not evaluated further. In freshwater, the YSI meter was within 4% and the Sper meter was within 5% of the theoretical value at 12 and 22 °C. Meters were less accurate at 38 °C. The accuracy in saline water was similar to freshwater. Across temperature and salinity, the response time averaged 10 s for the YSI meter and 15 s for the Sper meter. We conclude that the YSI and Sper meters can provide rapid, stable, and accurate measurements of DO.

Physiological characteristics and RNA sequencing in two root zones with contrasting nitrate assimilation of Populus × canescens

Different root zones have distinct capacities for nitrate (NO3−) uptake in Populus species, but the underlying physiological and microRNA (miRNA) regulatory mechanisms remain largely unknown. To address this question, two root zones of Populus × canescens (Ait.) Smith. with contrasting capacities for NO3− uptake were investigated. The region of 0–40 mm (root zone I) to the root apex displayed net influxes, whereas the region of 40–80 mm (root zone II) exhibited net effluxes. Concentrations of NO3− and ammonium (NH4+) as well as nitrate reductase activity were lower in zone II than in zone I. Forty one upregulated and twenty three downregulated miRNAs, and 576 targets of these miRNAs were identified in zone II in comparison with zone I. Particularly, growth-regulating factor 4 (GRF4), a target of upregulated ptc-miR396g-5p and ptc-miR396f_L + 1R-1, was downregulated in zone II in comparison with zone I, probably contributing to lower NO3− uptake rates and assimilation in zone II. Furthermore, several miRNAs and their targets, members of C2H2 zinc finger family and APETALA2/ethylene-responsive element binding protein family, were found in root zones, which probably play important roles in regulating NO3− uptake. These results indicate that differentially expressed miRNA–target pairs play key roles in regulation of distinct NO3− uptake rates and assimilation in different root zones of poplars.

Integrated Modeling of Photosynthesis and Transfer of Energy, Mass and Momentum in the Soil-Plant-Atmosphere Continuum System

Root water uptake is an important component of the terrestrial water balance and a critical factor that influences energy, water vapor, and carbon exchange among soil, vegetation and atmosphere interfaces. However, most of the current vegetation photosynthesis models do not account for root water uptake, which compromises their applications under water stressed conditions. To address this limitation, this study integrates photosynthesis and transfer of energy, mass and momentum in the soil-plant-atmosphere continuum system, via a simplified 1D root growth model and a resistance scheme (from soil, through root zones and plants, to atmosphere). The coupled model was evaluated with field measurement of a maize canopy. The results indicated that the simulation of land surface fluxes was significantly improved due to considering the root water uptake, especially when vegetation is experiencing sever water stress. This finding highlights the importance of enhanced soil heat and moisture transfer, as well as dynamic root distribution, on simulating ecosystem functioning.