A very broad range of microorganisms cause orthopaedic infections. Modern diagnosis depends on traditional culture techniques, which remain in common use, and on molecular testing, which is advancing rapidly as a field. Advances in culture-based techniques include modifications in specimen collection, incubation, and identification. Identification of pathogens through detection and analysis of microbial nucleic acids, without culturing the organism, is the focus of molecular microbiologic diagnostics. A variety of polymerase chain reaction (PCR) tests can identify single or multiple pathogens in a single PCR reaction. 16S PCR uses conserved DNA sequences to identify a very broad array of pathogens. Newer techniques (next-generation sequencing) avoid the limitations of PCR and can detect an even broader, theoretically unlimited range of pathogens by sequencing all of the nucleic acids in entire samples. The place for these technologies in orthopaedics is evolving. While anecdotal reports and some studies show molecular diagnostics’ advantages over culture, traditional cultures still remain the most accessible, affordable, and reliable in most clinical scenarios. However, further improvements are likely to alter the landscape of microbial diagnosis of orthopaedic infections.