JUSUF: Modular Tier-2 Supercomputing and Cloud Infrastructure at Jülich Supercomputing Centre

JUSUF is a petaflop supercomputer operated by Jülich Supercomputing Centre at Forschungszentrum Jülich as a European supercomputing and cloud resource. JUSUF was funded via the ICEI project and especially serves the Human Brain Project and PRACE via ICEI and the Fenix Research Infrastructure. The system consists of two parts, an HPC cluster partition and an Infrastructure-as-a-Service cloud partition. The system entered production phase in spring 2020. It is based on the Bull X400 product family with AMD Rome processors, partially accelerated by Nvidia V100 GPUs, and Nvidia Mellanox HDR InfiniBand.

Visions of unification and integration: Building brains and communities in the European Human Brain Project

The Human Brain Project (HBP) was launched in October 2013 by the European Commission to build an information and communication technology infrastructure that would support large-scale brain modelling and simulation. Less than a year after its launch, more than 800 neuroscientists signed a letter that claimed the HBP ‘would fail to meet its goals’. Based on multi-sited ethnographic fieldwork conducted between February 2014 and January 2017 in France, Germany, the United Kingdom and the HBP headquarters in Switzerland, and over 40 interviews with scientists, engineers and project administrators, this article traces how competing visions over how brain models should be built became tied into debates over how scientific communities should be governed. Articulations of these different kinds of models and communities appealed to competing imaginaries of Europe itself – of Europe and European science as unified or pluralistic. This article argues that scientific models are sites of contestation over social and political futures. The tensions between visions of scientific unification and pluralism in the HBP mirrored the tensions between imaginaries of European political unification and pluralism.

Ethical and Social Aspects of Neurorobotics

The interdisciplinary field of neurorobotics looks to neuroscience to overcome the limitations of modern robotics technology, to robotics to advance our understanding of the neural system’s inner workings, and to information technology to develop tools that support those complementary endeavours. The development of these technologies is still at an early stage, which makes them an ideal candidate for proactive and anticipatory ethical reflection. This article explains the current state of neurorobotics development within the Human Brain Project, originating from a close collaboration between the scientific and technical experts who drive neurorobotics innovation, and the humanities and social sciences scholars who provide contextualising and reflective capabilities. This article discusses some of the ethical issues which can reasonably be expected. On this basis, the article explores possible gaps identified within this collaborative, ethical reflection that calls for attention to ensure that the development of neurorobotics is ethically sound and socially acceptable and desirable.

HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data

Anatomically and biophysically detailed data-driven neuronal models have become widely used tools for understanding and predicting the behavior and function of neurons. Due to the increasing availability of experimental data from anatomical and electrophysiological measurements as well as the growing number of computational and software tools that enable accurate neuronal modeling, there are now a large number of different models of many cell types available in the literature. These models were usually built to capture a few important or interesting properties of the given neuron type, and it is often unknown how they would behave outside their original context. In addition, there is currently no simple way of quantitatively comparing different models regarding how closely they match specific experimental observations. This limits the evaluation, re-use and further development of the existing models. Further, the development of new models could also be significantly facilitated by the ability to rapidly test the behavior of model candidates against the relevant collection of experimental data. We address these problems for the representative case of the CA1 pyramidal cell of the rat hippocampus by developing an open-source Python test suite, which makes it possible to automatically and systematically test multiple properties of models by making quantitative comparisons between the models and electrophysiological data. The tests cover various aspects of somatic behavior, and signal propagation and integration in apical dendrites. To demonstrate the utility of our approach, we applied our tests to compare the behavior of several different hippocampal CA1 pyramidal cell models from the ModelDB database against electrophysiological data available in the literature, and concluded that each of these models provides a good match to experimental results in some domains but not in others. We also show how we employed the test suite to aid the development of models within the European Human Brain Project (HBP), and describe the integration of the tests into the validation framework developed in the HBP, with the aim of facilitating more reproducible and transparent model building in the neuroscience community.Author summaryAnatomically and biophysically detailed neuronal models are useful tools in neuroscience because they allow the prediction of the behavior and the function of the studied cell type under circumstances that are hard to investigate experimentally. However, most detailed biophysical models have been built to capture a few selected properties of the real neuron, and it is often unknown how they would behave under different circumstances, or whether they can be used to successfully answer different scientific questions. To help the modeling community develop better neural models, and make the process of model building more reproducible and transparent, we developed a test suite that enables the comparison of the behavior of models of neurons in the rat hippocampus and their evaluation against experimental data. Applying our tests to several models available in the literature, we show that each model is able to capture some of the important properties of the real neuron but fails to match experimental data in other domains. We also use the test suite in the model development workflow of the European Human Brain Project to aid the construction of better models of hippocampal neurons and networks.