Density Functional Theory Study on the Adsorption Mechanism of Sulphide Gas Molecules on α-Fe2O3(001) Surface

Sulphide gas is an impurity that affects the quality of natural gas, which needs reasonable storage and transportation. In this work, we investigated the adsorption structure and electronic behavior of hydrogen sulfide (H2S), carbonyl sulfur (COS), and methyl mercaptan (CH3SH) on sulphide gas molecules on pure and vacant α-Fe2O3(001) surfaces by density functional theory with geometrical relaxations. The results show that H2S and CH3SH are mainly adsorbed in the form of molecules on the pure Fe2O3(001) surface. On the vacant α-Fe2O3(001) surface, they can be adsorbed on Fe atoms in molecular form and by dissociation. The absolute value of the adsorption energy of H2S and CH3SH on the vacancy defect α-Fe2O3 surface is larger, and the density of states show that the electron orbital hybridization is more significant, and the adsorption is stronger. The charge differential density and Mulliken charge population analysis show that the charge is rearranged and chemical bonds are formed. The affinity of H2S to the vacancy α-Fe2O3(001) surface is slightly higher than that of CH3SH, while COS molecules basically do not adsorb on the α-Fe2O3(001) surface, which may be related to the stable chemical properties of the molecules themselves.

Cardiac Atrial Compartmentalisation Proteomics: A Modified Density Gradient Method to Analyse Endo-lysosomal Proteins

SummaryThe importance of lysosomes in cardiac physiology and pathology are well established, and evidence for roles in calcium signalling are emerging. We describe a label-free proteomics method suitable for small cardiac tissue biopsies based on density-separated fractionation, which allows study of endo-lysosomal (EL) proteins.Density gradient fractions corresponding to tissue lysate; sarcoplasmic reticulum (SR), mitochondria (Mito) (1.3 g/ml); and EL with negligible contamination from SR or Mito (1.04 g/ml), were analysed using Western Blot, enzyme activity assay and LC-MS/MS analysis (adapted discontinuous Percoll, and sucrose differential density gradient).Kyoto Encyclopedia of Genes and Genomes, Reactome, Panther and Gene Ontology pathway analysis showed good coverage of RAB proteins and lysosomal cathepsins (including cardiac-specific cathepsin D) in the purified EL fraction. Significant EL proteins recovered included catalytic activity proteins. We thus present a comprehensive protocol and dataset of guinea-pig atrial EL organelle proteomics using techniques also applicable for non-cardiac tissue.

The Globalization of Protest in Africa

Academic studies on the globalized dimension of African protests have complexified the understanding of “transnational social movements,” too often considered as the mechanical and adequate response to a newly globalized neoliberal economy. The long history of globalized protest in and about Africa, starting from the antislavery campaigns to the global justice movements, shows that these movements, often initiated outside the continent, have contributed to the “invention of Africa.” The notion of “extraversion” developed by Jean-François Bayart to explain African states’ relation to the outside world helps interrogating the material and symbolic asymmetrical relationships inside these networks but also the agency of African protesters in shaping their causes. Resources, legitimate knowledge, and audiences of protest are structurally located with Western actors, creating misunderstanding or conflicts in these globalized networks. But African activists do benefit from their internationalization, acting as a protection and a—sometimes contested—legitimation. Also, against the imposition of supposedly universal causes, African protesters have developed new concepts and narratives, especially on gender and sex rights, to assert an African way of framing these causes. Far from being completely constrained by Western agenda, funding, or audience, some local conflicts also benefit from often international ramifications born out of the development of transnational criminal economies. Lastly, reflections on the regional variations and the diffusion of protest inside the continent shows a differential density of international networks and the growing importance of social media in the globalization of protest.

Spatial RNA proximities reveal a bipartite nuclear transcriptome and territories of differential density and transcription elongation rates

Spatial transcriptomics aims to understand how the ensemble of RNA molecules in tissues and cells is organized in 3D space. Here we introduce Proximity RNA-seq, which enriches for nascent transcripts, and identifies contact preferences for individual RNAs in cell nuclei. Proximity RNA-seq is based on massive-throughput RNA-barcoding of sub-nuclear particles in water-in-oil emulsion droplets, followed by sequencing. We show a bipartite organization of the nuclear transcriptome in which compartments of different RNA density correlate with transcript families, tissue specificity and extent of alternative splicing. Integration of proximity measurements at the DNA and NA level identify transcriptionally active genomic regions with increased nucleic acid density and faster RNA polymerase II elongation located close to compact chromatin.

Connectivity and cortical architecture

Brain regions of the cerebral cortex differ in their cytoarchitecture as well as in the intrinsic connectivity within an area and the organization of macroscopic connections between different cortical areas. Nonetheless, it is not clear which rules underlie the relationship of cellular and fiber architecture, and how the characteristic cortical microand macro-connectivity are related to each other. In order to identify principles of cortical connectivity, we systematically investigate various parameters of cortical architecture and their relation to the organization of anatomical connections among cortical areas. Characteristic parameters of cortical architecture include the differential density and distribution of neurons and neuron types across the layers of cortical areas, as well as the regional distribution of different receptors of neurotransmitter systems. The cytoarchitectonic characterization of the brain is a classic approach of neuroanatomy, which recently has been supplemented by new techniques for labeling specific neural components as well as novel optical and analytical approaches. However, the systematic quantitative acquisition of architectonic and morphological parameters of the human brain has only just begun. It is a fundamental challenge to gather and quantify the extremely extensive and detailed histological data (“big data”) by novel image processing techniques. This challenge is taken up in the BigBrain project. Extensive anatomical data already exist for a number of animal models, for example, the brains of nonhuman primates, the cat or the mouse. However, for each single parameter it has to be demonstrated how far these data can be generalized across species. Previous analyses support the notion that the regionally specific cytoarchitecture of the cerebral cortex is closely linked to the existence and the laminar projection patterns of corticocortical connections. These results imply systematic relationships between the patterns of macroscopic connections among cortical areas and the regionally specific intrinsic circuitry within cortical areas. Such relations are the basis of generic models of multiscale cortical connectivity, which reflect essential anatomical and functional properties of mammalian cortical organization.