Simplicillium pech-merlensis, a new fungal species isolated from the air of the Pech-Merle show cave

An original fungal strain has been recovered during an aerobiological survey in the Pech-Merle show cave (France). The use of multi-locus (ITS, LSU, SSU RPB1, RPB2 and TEF-1α) phylogenetic analysis of the strain by maximum likelihood and by Bayesian inference coupled with a morphological characterization allowed us to place it in the Simplicillium genus as Simplicillium pech-merlensis sp. nov. This new species seems morphologically close to S. calcicola and S. album, which were also first isolated from a cave habitat. This paper discusses the phylogenetic place of S. pech-merlensis and some other species in the genus Simplicillium.

Neopestalotiopsis cavernicola sp. nov. from Gem Cave in Yunnan Province, China

In this paper we describe a new species of cave fungus belonging to Sporocadaceae (Amphisphaeriales), collected from Gem Cave, Fumin County, Yunnan Province, China. Initial morphological observations confirmed that our fungal collection is a pestalotioid species. Phylogenetic analyses of combined internal transcribed spacer (ITS), β-tubulin (TUB) and translation elongation factor 1-alpha (TEF1α) gene sequence dataset confirmed that our fungus forms an independent branch within Neopestalotiopsis. Thus, we describe our fungus as a new species of Neopestalotiopsis based on both morphology and multigene phylogeny. This is the first-ever report of Neopestalotiopsis from a cave habitat. A full description, micrographs and a phylogenetic tree showing the placement of the new species are provided.

Reproduction, development, asymmetry and late eye regression in the Brazilian cave catfish Ituglanis passensis (Siluriformes, Trichomycteridae): evidence contributing to the neutral mutation theory

The troglobitic (exclusively subterranean source population) catfish Ituglanis passensis (Siluriformes, Trichomycteridae) is endemic to the Passa Três Cave, São Domingos karst area, Rio Tocantins basin, Central Brazil. This unique population presents variably reduced eyes and melanic pigmentation. We describe reproduction and early development in this species based on a spontaneous (non-induced) reproductive-event that occurred in the laboratory in January–February, 2009, while simultaneously comparing with data from the cave-habitat and a previous reproductive event. Egg laying was parceled. Egg-size and number were within variations observed in epigean congeners. Larvae behavior and growth is described. A single surviving specimen was monitored over two years. Eye-regression started late, one year after birth, and followed a pattern of stasis phases intercalated with slow growth and fluctuating asymmetric rates. Late eye regression, associated with asymmetry in eye development and intra-population variability of troglomorphic traits, as shown by several Brazilian subterranean fishes, provide support for the Neutral Mutation Theory.

Arinosaster patriciae (Porifera, Demospongiae): new genus and species and the second record of a cave freshwater sponge from Brazil

Arinosaster patriciae gen. nov. et sp. nov. is the second continental sponge registered for a subterranean environment (cave habitat) in Brazil and the Neotropical Region. The sponges were recorded and collected in a 5m depth technical dive in a sinkhole of Rio Claro, tributary of Rio Arinos, Tapajós system, Amazon Basin (-13.8170386, -56.6914225) at the locality of Sumidouro do Rio Claro, Municipality of Diamantino, state of Mato Grosso, central western Brazil. The cave is placed in sandstone rocks of the Parecis Group (Upper Cretaceous). “In situ” photographs of colonies, of living specimens, SEM illustrations of dissociated spicules as well as of the skeletal structure, are presented. The occurrence of euaster microscleres of the type spherasters are for the first time reported for continental sponges but, also new, is the occurrence of spongin fibers, composing with fibers of silicious spicules in the skeletal arrangement. The absence of gemmules in the studied material and the fact that new specimens remain undetected call for the proposition of a new monospecific genus to be retained as Incertae Sedis until new and gemmuliferous colonies are found.

Comparative Transcriptomics Reveals the Molecular Genetic Basis of Cave Adaptability in Sinocyclocheilus Fish Species

Cavefish evolved a series of distinct survival mechanisms for adaptation to cave habitat. Such mechanisms include loss of eyesight and pigmentation, sensitive sensory organs, unique dietary preferences, and predation behavior. Thus, it is of great interest to understand the mechanisms underlying these adaptability traits of troglobites. The teleost genus Sinocyclocheilus (Cypriniformes: Cyprinidae) is endemic to China and has more than 70 species reported (including over 30 cavefish species). High species diversity and diverse phenotypes make the Sinocyclocheilus as an outstanding model for studying speciation and adaptive evolution. In this study, we conducted a comparative transcriptomics study on the brain tissues of two Sinocyclocheilus species (surface-dwelling species – Sinocyclocheilus malacopterus and semi-cave-dwelling species – Sinocyclocheilus rhinocerous living in the same water body. A total of 425,188,768 clean reads were generated, which contributed to 102,839 Unigenes. Bioinformatic analysis revealed a total of 3,289 differentially expressed genes (DEGs) between two species Comparing to S. malacopterus, 2,598 and 691 DEGs were found to be respectively, down-regulated and up-regulated in S. rhinocerous. Furthermore, it is also found tens of DEGs related to cave adaptability such as insulin secretion regulation (MafA, MafB, MafK, BRSK, and CDK16) and troglomorphic traits formation (CEP290, nmnat1, coasy, and pqbp1) in the cave-dwelling S. rhinocerous. Interestingly, most of the DEGs were found to be down-regulated in cavefish species and this trend of DEGs expression was confirmed through qPCR experiments. This study would provide an appropriate genetic basis for future studies on the formation of troglomorphic traits and adaptability characters of troglobites, and improve our understanding of mechanisms of cave adaptation.

Even worms matter: cave habitat restoration for a planarian species increased environmental suitability but not abundance

Invertebrates living in underground environments often have unusual and sometimes unique adaptations and occupy narrow ranges, but there is a lack of knowledge about most micro-endemic cave-dwelling invertebrate species. An illustrative case is that of the flatworm Dendrocoelum italicum, the first survey of which was performed 79 years after its description. The survey revealed that the underground stream supplying water to the pool from which the species was first described had been diverted into a pipe for human use, thus severely reducing the available habitat for the species. Here we describe the results of what we believe is the first habitat restoration action performed in a cave habitat for the conservation of a flatworm. The water-diverting structure was removed, with the involvement of local protected area administrators, citizens and volunteers from local organizations. The intervention resulted in the restoration of a large, stable pool inside the cave, thus creating an optimal habitat for this threatened planarian, with increased availability of prey and a stable population. This report of habitat restoration for a neglected invertebrate offers insights for the protection of other micro-endemic species.

Description of a second South American species in the Malagasy earwig genus Mesodiplatys from a cave habitat, with notes on the definition of Haplodiplatyidae (Insecta, Dermaptera)

The genusMesodiplatys(Dermaptera: Diplatyidae) comprises eight species from Madagascar and one species from Peru. Based on a sample collected from a cave in Brazil, a new species of this genus,MesodiplatysfalciferKamimura,sp. n., is described as the second species from South America. Based on a reexamination of the holotype ofMesodiplatysinsularis, a revised key toMesodiplatysspecies is provided. The definitions of the generaMesodiplatysandHaplodiplatysand the family Haplodiplatyidae are also reconsidered.