Right out of the gate: the genomics of Lessepsian invaders in the vicinity of the Suez Canal

Marine organisms that enter the Mediterranean from the Red Sea via the Suez Canal are known as Lessepsian bioinvaders. In general, genetic studies of Lessepsian fishes have shown little structure between Red Sea and Mediterranean populations. Yet notable exceptions suggest the importance of life-history factors that may influence patterns of spatial genetic variation. In this study, by sampling two invasive fishes with different life histories (the rabbitfish Siganus rivulatus and the filefish Stephanolepis diaspros), we looked at evidence of population structure and selection at the boundary between the Red Sea and the Mediterranean (the Suez Canal), using thousands of molecular markers. Results illustrate two divergent patterns of genetic patterns, with little genetic structure in S. rivulatus and strong population structure in S. diaspros, even at such small spatial scale. We discuss differences in ecological characteristics between the two species to account for such differences. In addition, we report that in the face of both high (S. rivulatus) and low (S. diaspros) gene flow, loci under selection were uncovered, and some protein coding genes were identified as being involved with osmoregulation, which seems to be an important feature of individuals crossing the salinity-variable Suez Canal. The presence of genes under selection in populations near the Suez Canal supports the idea that selection may be active and essential for successful invasions right out of the gate.

Association between spatial genetic variation and potential distribution in tree fern Alsophila gigantea (Cyatheaceae) in Hainan Island, China

Spatial genetic variation involves spatial genetic structure (SGS) and genetic diversity is important genetic features of plants. We first evaluated spatial genetic structure (SGS) and genetic diversity among four populations of Alsophila gigantea from Hainan Island, China, using inter-simple sequence repeat (ISSR) markers. Significant but weak FSGS was found in A. gigantea. High genetic diversity was identified at the species level and the population level. AMOVA analysis revealed a low level of genetic differentiation among the four populations with high gene flow. Mantel test showed no significant correlation between genetic distance and geographic distance. It was found that association between annual mean temperature and annual precipitation with FSGS. Combined with these spatial genetic variation, abundant precipitation and suitable temperature create a stable environment for A. gigantea in Hainan Island, which allows the fern to expand rapidly during the LGM. These results further emphasized the role of outcrossing, and history and environmental factors in the evolution of A. gigantea. This study also provided new insights on in local adaptation of A. gigantea to environmental fluctuations, and available genetic data to enhance the conservation for relict tree ferns.

Temporal and spatial genetic variation of Engraulis encrasicolus in the Adriatic Sea

Small pelagic fish play a key role in the marine ecosystem, controlling predator abundance and regulating primary production rates by foraging on plankton. Alterations induced at different ecological levels by fishing activities and/or environmental changes are affecting the reproductive success of several small pelagics, including European anchovy (Engraulis encrasicolus), which is a major target of Adriatic mid-water trawl and purse-seine fisheries. In this study, we evaluated short-term genetic changes of the species in the Adriatic Sea by applying molecular markers in three generations samples of European anchovy. Thirteen polymorphic microsatellite markers and a mitochondrial gene were used in cohorts of adults and larvae, collected at three sites in the north-east, central and southern Adriatic Sea in 2015. Furthermore, temporal and spatial genetic variation was assessed by comparing the dataset above with a sample of adult anchovy collected in 2012 at three sites close to those sampled in 2015. Expected heterozygosity was higher in adults than in larvae, suggesting a loss of genetic diversity and uneven reproduction. In addition, comparison of the two datasets demonstrated a change in the anchovy population structure from 2012 to 2015. In the reproductive event of 2015, this change led the two main genetic stocks described in the Adriatic Sea to merge into one. We suggest that the population structure of European anchovy in the north-eastern Adriatic may be influenced by changes in environmental parameters and by periodic alterations in the temporal pattern of population connectivity.

Right Out of The Gate: The Genomics of Lessepsian Invaders in The Vicinity of The Suez Canal

Lessepsian fishes, entering the Mediterranean through the Suez Canal, have showed so far little genetic structure, but notable exceptions suggest the importance of life-history factors that may influence their patterns of spatial genetic variation. In this study, by sampling two invasive fishes with different life histories (the rabbitfish Siganus rivulatus and the filefish Stephanolepis diaspros ), we looked at evidence of population structure and selection at the boundary between the Red Sea and the Mediterranean (the Suez Canal), using thousands of molecular markers. Results illustrate two divergent patterns of genetic patterns, with little genetic structure in S. rivulatus and strong population structure in S. diaspros, even at such small spatial scale. We discuss differences in ecological characteristics between the two species to account for such differences. In addition, we report that in the face of both high ( S. rivulatus ) and low ( S. diaspros ) gene flow, loci under selection were uncovered, and some protein coding genes were identified as being involved with osmoregulation, which seems to be an important feature of individuals crossing the salinity-variable Suez Canal. The presence of genes under selection in populations near the Suez Canal supports the idea that selection may be active and essential for successful invasions right out of the gate.

Bridging population genetics and the metacommunity perspective to unravel the biogeographic processes shaping genetic differentiation of Myriophyllum alterniflorum DC.

The degree to which dispersal limitation interacts with environmental filtering has intrigued metacommunity ecologists and molecular biogeographers since the beginning of both research disciplines. Since genetic methods are superior to coarse proxies of dispersal, understanding how environmental and geographic factors influence population genetic structure is becoming a fundamental issue for population genetics and also one of the most challenging avenues for metacommunity ecology. In this study of the aquatic macrophyte Myriophyllum alterniflorum DC., we explored the spatial genetic variation of eleven populations from the Iberian Plateau by means of microsatellite loci, and examined if the results obtained through genetic methods match modern perspectives of metacommunity theory. To do this, we applied a combination of robust statistical routines including network analysis, causal modelling and multiple matrix regression with randomization. Our findings revealed that macrophyte populations clustered into genetic groups that mirrored their geographic distributions. Importantly, we found a significant correlation between genetic variation and geographic distance at the regional scale. By using effective (genetic) dispersal estimates, our results are broadly in line with recent findings from metacommunity theory and re-emphasize the need to go beyond the historically predominant paradigm of understanding environmental heterogeneity as the main force driving macrophyte diversity patterns.