Diatom Species That Characterize Saline Ponds (South of Spain) With The Description of A New Navicula Species

The south of the Iberian Peninsula has a high number of saline ponds where electric conductivity (EC) is an important factor that affects directly aquatic organisms, influencing their distribution and abundance. Environmental factors (such as pH, EC and temperature) were measured and diatom assemblages were sampled in 15 saline shallow ponds in the south of Spain along a range of electric conductivity (1.4 mS to 51.6 mS cm-1) between spring of 2004 to early summer of 2006. Three groups of ponds were defined based on conductivity (oligosaline 1.4 to 5.3 mScm-1, mesosaline 10.9 to 17.3 mScm-1 and euhaline 32.3 to 51.6 mScm-1) and diatom assemblages were studied. PERMANOVA analysis showed significant differences in diatom community composition between the three groups of ponds. Multidimensional scaling analysis (nMDS) showed distinct clusters of diatom assemblages in oligosaline and mesosaline ponds. Dominant diatom species in the eusaline ponds were Tryblionella pararostrata, Halamphora cf. petrusa, Halamphora sp.1 and Cocconeis euglypta; in the mesosaline ponds Navicula veneta, Nitzschia elegantula and Planothidium delicatulum were dominant taxa and the oligosaline ponds were dominated by Navicula veneta, Pseudostaurosira brevistriata and Nitzschia inconspicua. A new diatom species was described in ponds with high electric conductivity (32-56 mS cm-1) and named N. maiorpargemina.A detailed description of N. maiorpargemina sp. nov. is presented in this study based on light and scanning electron microscopy after comparison with morphologically and ecologically related taxa.

Intertidal mussel reefs change the composition and size distribution of diatoms in the biofilm

Migrating diatoms are microscopic ecosystem engineering organisms that have functional consequences on the seascape scale by significantly contributing to the microphytobenthos biofilm. The microphytobenthos biofilm is a thin photosynthesising layer that covers the sediment on intertidal flats. It fuels the food web, increases sediment stability, and enhances the deposition of particles, providing ecosystem services to coastal communities. Here we tested the effect of another ecosystem engineering habitat, intertidal blue mussel reefs, on the composition and properties of migrating diatom communities. Small-scale reefs constructed in the intertidal mimicked and reinforced the natural pattern in diatom community composition and function that we documented in the field. The field experiment adding small reefs to the intertidal ran from 30 April to 10 June 2015 and the field samples were collected around a natural blue mussel bed on the same tidal flat on 7 October 2015 (N 53.489°, E 6.230°). Both the constructed small-scale reefs and the natural reef changed the community composition of diatoms in the biofilm by promoting higher numbers of smaller-sized cells and species. Small diatoms have higher growth and gross photosynthesis rates, indicating that this explains the higher production and chlorophyll-a concentration of the biofilm measured on natural intertidal shellfish reefs. Our results showed that shellfish reefs have a large impact on biofilm functioning. However, biofilms are also fuel for the shellfish, indicating that the two very different ecosystem engineers may facilitate coexistence on tidal flats through a positive feedback loop.

Diatom community structure in relation to environmental factors in human influenced rivers and streams in tropical Africa

The contemporaneous effect of natural and anthropogenic factors involved in a watershed contribution to the seasonal and spatial variation of diatom community composition is widely discussed in the scientific literature. Yet, there is a paucity of scientific evidence indicating the effect of these factors on diatoms in tropical African regions characterized by distinct dry and wet seasons and season associated human activities like rainfed agriculture are commonly practiced. We applied multivariate techniques to determine the spatio-temporal drivers of diatom assemblage and diatom species richness in human influenced rivers and streams in Ethiopia. We simultaneously collected water and diatom samples from 24 sampling points during the wet (July) and dry (February) seasons. Both water and diatom samples were processed following standard procedures. We identified 169 species belonging to 45 genera in the studied lotic systems. We found that both season and land use factors were important in defining diatom composition (PERMANOVA, p<0.05) and species richness (ANOVA, p<0.05) patterns. Diatom community composition was driven by conductivity, dissolved oxygen, pH, and turbidity parameters (Monte Carlo permutation test, p<0.05). Besides, diatom species richness was driven by dissolved oxygen, soluble reactive phosphorus, and turbidity (GLMM, p<0.05). The study highlighted physicochemical parameters influenced by seasonal variation and human activity determined the composition of diatoms. This implies that the unique feature of heavy rain during the rainy season in the region followed by extensive flooding aggravated by the steep slope from the highlands to the lowlands plays a major role in shaping the diatom autecology in the region. Therefore, in applying biomonitoring in such regions considering the effect of runoff and dilution is imperative.

DNA metabarcoding and morphological methods show complementary patterns in the metacommunity organization of lentic epiphytic diatoms

Diatoms are important organisms in freshwater ecosystems due to their position as primary producers and therefore, analyzing their communities provides relevant information on ecosystem functioning. Diatoms have historically been identified based on morphological traits, which is time-consuming and requires well-trained specialists. Nevertheless, DNA barcoding offers an alternative approach to overcome some limitations of the morphological method. Here, we assess if both approaches are comparable methods to study patterns and mechanisms (including environmental filtering and dispersal limitation) of epiphytic diatom metacommunities using a comprehensive dataset from 22 Mediterranean ponds at different taxonomic resolutions. We used a fragment of rbcL barcode gene combined with High-Throughput Sequencing to infer diatom community composition. The overall degree of correspondence between both approaches was assessed by Procrustean rotation analysis and Procrustean randomization tests, whereas the role of local environmental variables and geographical distances was studied using a comprehensive combination of BIOENV, Mantel tests and distance-based redundancy analysis. Our results showed a relatively poor correspondence in the compositional variation of diatom metacommunity between both approaches. We speculate that the incompleteness of the reference database and the bioinformatics processing are the biases most likely affecting the molecular approach, whereas the limited counting effort and the presence of cryptic species are presumably the major biases related with the morphological method. On the other hand, variation in diatom community composition detected with both approaches was strongly related to the environmental template, which may be related with the narrow ecological niche and the strong preferences for particular substrata of some diatom species. Nevertheless, we found no significant relationship between compositional variation and geographical distances at regional extent. Overall, our work highlights the importance of DNA metabarcoding to address empirical research questions of community ecology in freshwaters, especially once the reference databases include most genotypes of occurring taxa and bioinformatics biases are overcome.

Substrate type selection in diatom based lake water quality assessment

Various studies report contrasting results on the substrate-type effect on diatom community composition, but the particularly important question is whether or not it affects diatom-based assessments of water quality. We investigated whether the substrate type is a significant predictor of the diatom community composition and if it affects lake water quality assessment based on diatom indices. This study took place in Sava Lake (Serbia). We used glass, ceramic, willow and yew tree tiles as artificial substrates for periphyton development, and pebbles from the lake littoral as natural substrate. Results revealed differences in both the diatom community composition and diatom indices values related to the substrates. A distinction was recognized between natural, artificial wooden, and artificial inert substrates. However, the final lake quality assessment based on diatom indices was more or less similar in all substrate types in our study, and depended on value ranges associated with water quality classification and on diatom index choices. Artificial substrates in our study did show potential as an alternative for natural substrate, but further studies are required, particularly in various types of lentic ecosystems to confirm our findings and support artificial substrate employment in lake water quality assessment.

An Assessment of the Influence of Host Species, Age, and Thallus Part on Kelp-Associated Diatoms

Diatom community composition and abundances on different thallus parts of adult and juvenile specimens of Eckloniamaxima and Laminariapallida were examined in False Bay, South Africa, using light and scanning electron microscopy. Altogether, 288 thallus portions were analysed. Diatom abundances ranged from 0 to 404 cells mm−2 and were generally higher on E. maxima and juvenile thalli than L. pallida and adult specimens. Moreover, diatom abundances differed between the various thallus parts, being highest on the upper blade and lowest on the primary blade. A total of 48 diatom taxa belonging to 28 genera were found. Gomphoseptatum Medlin, Nagumoea Witkowski and Kociolek, Cocconeis Ehrenberg, and Navicula Bory were the most frequently occurring genera, being present in 84%, 65%, 62.5%, and 45% of the analysed samples, respectively. Among these, Cocconeis and Gomphoseptatum were the most abundant, contributing 50% and 27% of total diatom cells counted collectively across all samples. Permutational multivariate analysis of variance (PERMANOVA) revealed that all investigated main factors (kelp species and age and thallus part), as well as their two- and three-way interactions, except for the interaction between the host species and age, were significant. The high residual variance (72%) indicated that the sum of other unexamined factors contributed the largest component of the variation observed in the kelp-associated diatom communities, and grazing and possible defence strategies utilised by kelps are proposed as processes playing an important role in the structuring of epiphytic diatom communities. Possible endophytism of tissue-boring diatoms colonizing both kelp species is briefly discussed.

Technical note: A time-integrated sediment trap to sample diatoms for hydrological tracing

Diatoms, microscopic single-celled algae, are present in almost all habitats containing water (e.g. streams, lakes, soil and rocks). In the terrestrial environment, their diversified species distributions are mainly controlled by physiographical factors and anthropic disturbances which makes them useful tracers in catchment hydrology. In their use as a tracer, diatoms are generally sampled in streams by means of an automated sampling method; as a result, many samples must be collected to cover a whole storm run-off event. As diatom analysis is labour-intensive, a trade-off has to be made between the number of sites and the number of samples per site. In an attempt to reduce this sampling effort, we explored the potential for the Phillips sampler, a time-integrated mass-flux sampler, to provide a representative sample of the diatom assemblage of a whole storm run-off event. We addressed this by comparing the diatom community composition of the Phillips sampler to the composite community collected by automatic samplers for three events. Non-metric multidimensional scaling (NMDS) showed that, based on the species composition, (1) all three events could be separated from each other, (2) the Phillips sampler was able to sample representative communities for two events and (3) significantly different communities were only collected for the third event. These observations were generally confirmed by analysis of similarity (ANOSIM), permutational multivariate analysis of variance (PERMANOVA), and the comparison of species relative abundances and community-derived indices. However, sediment data from the third event, which was sampled with automatic samplers, showed a large amount of noise; therefore, we could not verify if the Phillips sampler sampled representative communities or not. Nevertheless, we believe that this sampler could not only be applied in hydrological tracing using terrestrial diatoms, but it might also be a useful tool in water quality assessment.