The Diversity and Community Assembly Process of Wetland Plants from Lakeshores on the Qinghai-Tibetan Plateau

Unravelling the patterns, potential processes and mechanisms underlying biodiversity has always been a crucial issue in community ecology. It is also a necessary first step for any conservation and restoration to better adapt fragile ecosystems to a changing climate. However, little is known regarding the structure and maintenance of plant communities in typical high-altitude wetlands. Here, we made a comprehensive analysis of the diversity and composition of wetland plant communities based on the distribution of plants near the shorelines of 19 lakes across the Qinghai-Tibetan Plateau. The latitude, mean annual temperature (MAT) and mean annual precipitation (MAP), along with the edaphic properties, were the dominant predictors affecting the taxonomic and phylogenetic α-diversity. Besides diversification, ecological drift, mixing with weak dispersal and weak selection shaped the community composition of wetland plants in our study. The latitude and MAP predictors, although modest, showed an impact on the community structure.

Analysing the distance decay of community similarity in river networks using Bayesian methods

The distance decay of community similarity (DDCS) is a pattern that is widely observed in terrestrial and aquatic environments. Niche-based theories argue that species are sorted in space according to their ability to adapt to new environmental conditions. The ecological neutral theory argues that community similarity decays due to ecological drift. The continuum hypothesis provides an intermediate perspective between niche-based theories and the neutral theory, arguing that niche and neutral factors are at the opposite ends of a continuum that ranges from competitive to stochastic exclusion. We assessed the association between niche-based and neutral factors and changes in community similarity measured by Sorensen’s index in riparian plant communities. We assessed the importance of neutral processes using network distances and flow connection and of niche-based processes using Strahler order differences and precipitation differences. We used a hierarchical Bayesian approach to determine which perspective is best supported by the results. We used dataset composed of 338 vegetation censuses from eleven river basins in continental Portugal. We observed that changes in Sorensen indices were associated with network distance, flow connection, Strahler order difference and precipitation difference but to different degrees. The results suggest that community similarity changes are associated with environmental and neutral factors, supporting the continuum hypothesis.

Phytoplankton biodiversity and the inverted paradox

Earth’s aquatic food webs are overwhelmingly supported by planktonic microalgae that live in the sunlit water column where only a minimum number of physical niches are readily identifiable. Despite this paucity of environmental differentiation, these “phytoplankton” populations exhibit a rich biodiversity, an observation not easily reconciled with broadly accepted rules of resource-based competitive exclusion. This conundrum is referred to as the “Paradox of the Plankton”. Consideration of physical distancing between nutrient depletion zones around individual phytoplankton, however, suggests a competition-neutral resource landscape. Application of neutral theory to the sheer number of phytoplankton in physically-mixed water masses yields a prediction of astronomical biodiversity, suggesting the inverted paradox: Why are there so few phytoplankton species? Here, we introduce a trophic constraint on phytoplankton that, when combined with stochastic principals of ecological drift, predicts only modest levels of diversity in an otherwise competition-neutral landscape. Our “trophic exclusion” principle predicts diversity to be independent of population size and yields a species richness across cell-size classes that is consistent with broad oceanographic survey observations.

For An Ecological Awareness of Responsible Living

The entrenched and firm conviction that man is master of nature while being separate from it has fostered the culture of the indiscriminate use of natural resources, the destruction of eco-systems and a waste society. Over recent decades, behind the urgent need to halt the ecological drift, the natural landscape has been of considerable interest in various disciplinary contexts including biology, from which it has gained renewed consideration from the “ecology of landscape” perspective, and ethics. Once the theoretical aspects of the ecology of the landscape concept have been clarified, I will demonstrate that the human condition is part of the natural environment. On this basis I will highlight the necessity for man to develop an ecological awareness founded on responsibility regarding biodiversity. The ethics of responsibility, enlightened by an ecological awareness, have to inspire living and guide environmental policy-making.

Matrix quality determines the strength of habitat loss filtering on bird communities at the landscape scale

Habitat loss and fragmentation represent a major threat to biodiversity, however, the modulation of its effects by the non-habitat matrix surrounding habitat patches is still undervalued. The landscape matrix might change community assembly in different ways. For example, low-quality matrices can accentuate environmental filtering by reducing resource availability and/or deteriorating abiotic conditions but they may also over limit dispersal of organisms and make communities more prone to ecological drift. To understand how matrix quality modulates the effects of habitat loss, we quantified the relative importance of environmental filter and ecological drift in bird occurrences across both local and landscape gradients of habitat loss embedded in low- and high-quality matrices. We used a trait-based approach to understand habitat loss filtering effects on birds. We found that low-quality matrices, composed mainly of low-productive pasturelands, increased the severity of habitat loss filtering effects for forest specialist birds, but only at the landscape scale. Bird occurrence was in general higher in high-quality matrices, i.e., more heterogeneous and with low-contrasting edges, indicating the role of the matrix quality on attenuating species extinction risks at the landscape scale probably due to mass effect. Moreover, forest specialists presented a strong negative response to habitat loss filtering across different functional traits, while generalists presented a high variability in traits response to habitat loss. We raised evidence in supporting that landscape habitat loss filtering may be relaxed or reinforced depending on the quality of the matrix, evidencing that matrix quality has a strong impact in modulating community assembly processes in fragmented landscapes. In practical terms, it means that improving matrix quality may help in maintaining the high diversity of birds even without any increase in native forest cover.

The effect of periodic disturbances and carrying capacity on the significance of selection and drift in complex bacterial communities

Understanding how periodical disturbances affect the community assembly processes is vital for predicting temporal dynamics in microbial communities. The effect of dilutions as disturbances are poorly understood. We used a marine bacterial community to investigate the effect of disturbance (+/-) and carrying capacity (high/low) over 50 days in a dispersal-limited 2x2 factorial crossover study in triplicates. The community's disturbance regime was crossed halfway. We modelled the rate of change in community composition between replicates and used this rate to quantify selection and ecological drift. The disturbed communities increased in Bray-Curtis similarity with 0.011+/-0.0045 (Period 1) and 0.0092+/-0.0080 day-1 (Period 2), indicating that selection dominated community assembly. The undisturbed communities decreased in similarity at a rate of -0.015+/-0.0038 day-1 in Period 1 and were stable in Period 2 at 0.00050+/-0.0040 day-1, suggesting drift structured community assembly. Interestingly, carrying capacity had minor effects on community dynamics. This study is the first to show that stochastic effects are suppressed by periodical disturbances resulting in exponential growth periods due to density-independent biomass loss and resource input. The increased contribution of selection as a response to disturbances implies that ecosystem prediction is achievable.

Disentangling niche theory and beta diversity change

Beta diversity describes the differences in species composition among communities. Changes in beta diversity over time are thought to be due to selection based on species' niche characteristics. For example, theory predicts that selection that favours habitat specialists will increase beta diversity. In practice, ecologists struggle to predict how beta diversity changes. To remedy this problem, we propose a novel solution that formally measures selection's effects on beta diversity. Using the Price equation, we show how change in beta diversity over time can be partitioned into fundamental mechanisms including selection among species, variable selection among communities, drift, and immigration. A key finding of our approach is that a species' short-term impact on beta diversity cannot be predicted using information on its long-term environmental requirements (i.e. its niche). We illustrate how our approach can be used to partition causes of diversity change in a montane tropical forest before and after an intense hurricane. Previous work in this system highlighted the resistance of habitat specialists and the recruitment of light-demanding species but was unable to quantify the importance of these effects on beta diversity. Using our approach, we show that changes in beta diversity were consistent with ecological drift. We use these results to highlight the opportunities presented by a synthesis of beta diversity and formal models of selection.

Neutral theory exposes the challenge of bending the curve of biodiversity loss for the post-2020 Global Biodiversity Framework

In May, nations of the world will meet to negotiate the post-2020 Global Biodiversity Framework under the Convention on Biological Diversity. An influential ambition is “bending the curve of biodiversity loss”, which aims to reverse the decline of global biodiversity indicators. A second relevant, yet less prominent, milestone is the 20th anniversary of the publication of The Unified Neutral Theory of Biodiversity and Biogeography. Here, I apply neutral theory to show how global biodiversity indicators for population size (Living Planet Index) and extinction threat (Red List Index) decline under neutral ecological drift. This demonstrates that declining indicators alone do not necessarily reflect deterministic species-specific or geographical patterns of biodiversity loss. Thus, “bending the curve” could be assessed relative to a counterfactual based on neutral theory, rather than static baselines. If used correctly, the 20-year legacy of neutral theory can be extended to make a valuable contribution to the post-2020 Global Biodiversity Framework

Manipulating vector transmission reveals local processes in bacterial communities of bats

Infectious diseases result from multiple interactions among microbes and hosts, but community ecology approaches are rarely applied. Manipulation of vector populations provides a unique opportunity to test the importance of vectors in infection cycles while also observing changes in pathogen community diversity and species interactions. Yet for many vector-borne infections in wildlife, a biological vector has not been experimentally verified and few manipulative studies have been performed. Using a captive colony of fruit bats in Ghana, we observed changes in the community of Bartonella bacteria over time after the decline and subsequent reintroduction of bat flies. With reduced transmission, community changes were attributed to ecological drift and potential selection through interspecies competition mediated by host immunity. This work demonstrated that forces maintaining diversity in communities of free-living macroorganisms act in similar ways in communities of symbiotic microorganisms, both within and among hosts. Additionally, this study is the first to experimentally test the role of bat flies as vectors of Bartonella species.

Selective constraints on global plankton dispersal

Marine microbial communities are highly interconnected assemblages of organisms shaped by ecological drift, natural selection, and dispersal. The relative strength of these forces determines how ecosystems respond to environmental gradients, how much diversity is resident in a community or population at any given time, and how populations reorganize and evolve in response to environmental perturbations. In this study, we introduce a globally resolved population–genetic ocean model in order to examine the interplay of dispersal, selection, and adaptive evolution and their effects on community assembly and global biogeography. We find that environmental selection places strong constraints on global dispersal, even in the face of extremely high assumed rates of adaptation. Changing the relative strengths of dispersal, selection, and adaptation has pronounced effects on community assembly in the model and suggests that barriers to dispersal play a key role in the structuring of marine communities, enhancing global biodiversity and the importance of local historical contingencies.