Analysis of the Potential Associated with the Siderophores Synthesis in the Bacillus Subtilis Strain Using Whole Genome Sequencing

2021 ◽  
pp. 663-669
Author(s):  
Timur Dunyashev ◽  
Georgij Laptev ◽  
Elena Yildirim ◽  
Larisa Ilina ◽  
Valentina Filippova ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Subtilis Strain ◽  
Whole Genome

Primary analysis of the results of whole-genome sequencing of biocontrol strains Bacillus subtilis BZR 336g and Bacillus subtilis BZR 517

2019 ◽  
Vol 1 (81) ◽  
pp. 131-137
Author(s):  
Aleksandr Milovanov ◽  
◽  
Anzhela Asaturova ◽  
Natalia Tomashevich ◽  
Alexander Kozitsyn ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Whole Genome ◽  
Primary Analysis

scholarly journals Experimental Evolution of Enhanced Growth by Bacillus subtilis at Low Atmospheric Pressure: Genomic Changes Revealed by Whole-Genome Sequencing

2015 ◽  
Vol 81 (21) ◽  
pp. 7525-7532 ◽  
Author(s):  
Samantha M. Waters ◽  
Daniel R. Zeigler ◽  
Wayne L. Nicholson
Keyword(s):  
Bacillus Subtilis ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Atmospheric Pressure ◽  
Genomic Sequence ◽  
Relative Fitness ◽  
Whole Genome ◽  
Knockout Mutant ◽  
Content Type ◽  
Genomic Changes

ABSTRACTKnowledge of how microorganisms respond and adapt to low-pressure (LP) environments is limited. Previously,Bacillus subtilisstrain WN624 was grown at the near-inhibitory LP of 5 kPa for 1,000 generations and strain WN1106, which exhibited increased relative fitness at 5 kPa, was isolated. Genomic sequence differences between ancestral strain WN624 and LP-evolved strain WN1106 were identified using whole-genome sequencing. LP-evolved strain WN1106 carried amino acid-altering mutations in the coding sequences of only seven genes (fliI,parC,ytoI,bacD,resD,walK, andyvlD) and a single 9-nucleotide in-frame deletion in thernjBgene that encodes RNase J2, a component of the RNA degradosome. By using a collection of frozen stocks of the LP-evolved culture taken at 50-generation intervals, it was determined that (i) the fitness increase at LP occurred rapidly, while (ii) mutation acquisition exhibited complex kinetics. A knockout mutant ofrnjBwas shown to increase the competitive fitness ofB. subtilisat both LP and standard atmospheric pressure.

scholarly journals Draft Genome Sequence of the Type Strain Bacillus subtilis subsp. subtilis DSM10

2021 ◽  
Vol 10 (10) ◽  
Author(s):  
Lars Lilge ◽  
Robert Hertel ◽  
Kambiz Morabbi Heravi ◽  
Marius Henkel ◽  
Fabian M. Commichau ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Subtilis Subsp

ABSTRACT The Bacillus subtilis subsp. subtilis type strain DSM10 has been used as a reference in various studies. However, detailed information about the genome has not been available. Therefore, whole-genome sequencing was performed, and the sequence was compared with that of the related B. subtilis strain NCIB3610.

scholarly journals Isolation, Whole-Genome Sequencing, and Annotation of Yimella sp. RIT 621, a Strain That Produces Antibiotic Compounds against Escherichia coli ATCC 25922 and Bacillus subtilis BGSC 168

2019 ◽  
Vol 8 (17) ◽  
Author(s):  
Anutthaman Parthasarathy ◽  
Narayan H. Wong ◽  
Nicolas D. Burns ◽  
Atlantis H. Aziz-Dickerson ◽  
Joyceline Dweh ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Bacillus Subtilis ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Whole Genome ◽  
Negative Bacterium ◽  
Positive Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
Antibiotic Compounds

Here, we report the isolation, identification, whole-genome sequencing, and annotation of the bacterium Yimella sp. strain RIT 621. Concentrated spent medium extract treated with ethyl acetate was found to produce bactericidal compounds against the Gram-positive bacterium Bacillus subtilis BGSC 168 and the Gram-negative bacterium Escherichia coli ATCC 25922.

scholarly journals Whole-Genome Sequencing and Comparative Genome Analysis of Bacillus subtilis Strains Isolated from Non-Salted Fermented Soybean Foods

PLoS ONE ◽  
2015 ◽  
Vol 10 (10) ◽  
pp. e0141369 ◽  
Author(s):  
Mayumi Kamada ◽  
Sumitaka Hase ◽  
Kazushi Fujii ◽  
Masato Miyake ◽  
Kengo Sato ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Analysis ◽  
Whole Genome ◽  
Comparative Genome Analysis ◽  
Comparative Genome ◽  
Fermented Soybean ◽  
Fermented Soybean Foods

Utility of Whole Genome Sequencing in diagnosing complex disorders: lesson from renal tubular disorders

2018 ◽  
Author(s):  
Mark Stevenson ◽  
Alistair T Pagnamenta ◽  
Heather G Mack ◽  
Judith A Savige ◽  
Kate E Lines ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Whole Genome ◽  
Complex Disorders ◽  
Tubular Disorders ◽  
Renal Tubular Disorders ◽  
Renal Tubular

0306 Exploring the feasibility of using copy number variants as genetic markers through large-scale whole genome sequencing experiments

2016 ◽  
Vol 94 (suppl_5) ◽  
pp. 146-146
Author(s):  
D. M. Bickhart ◽  
L. Xu ◽  
J. L. Hutchison ◽  
J. B. Cole ◽  
D. J. Null ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genetic Markers ◽  
Genome Sequencing ◽  
Copy Number ◽  
Large Scale ◽  
Copy Number Variants ◽  
Whole Genome
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