DasR is a pleiotropic regulator required for antibiotic production, pigment biosynthesis, and morphological development in Saccharopolyspora erythraea

2015 ◽  
Vol 99 (23) ◽  
pp. 10215-10224 ◽  
Author(s):  
Cheng-Heng Liao ◽  
Ya Xu ◽  
Sébastien Rigali ◽  
Bang-Ce Ye
2008 ◽  
Vol 190 (20) ◽  
pp. 6903-6908 ◽  
Author(s):  
Ya-Wen Lu ◽  
Adrianna K. San Roman ◽  
Amy M. Gehring

ABSTRACT The phosphopantetheinyl transferase genes SCO5883 (redU) and SCO6673 were disrupted in Streptomyces coelicolor. The redU mutants did not synthesize undecylprodigiosin, while SCO6673 mutants failed to produce calcium-dependent antibiotic. Neither gene was essential for actinorhodin production or morphological development in S. coelicolor, although their mutation could influence these processes.


2017 ◽  
Vol 199 (12) ◽  
Author(s):  
Yoshihiro Mouri ◽  
Kenji Konishi ◽  
Azusa Fujita ◽  
Takeaki Tezuka ◽  
Yasuo Ohnishi

ABSTRACT The rare actinomycete Actinoplanes missouriensis forms sporangia, including hundreds of flagellated spores that start swimming as zoospores after their release. Under conditions suitable for vegetative growth, zoospores stop swimming and germinate. A comparative proteome analysis between zoospores and germinating cells identified 15 proteins that were produced in larger amounts in germinating cells. They include an orthologue of BldD (herein named AmBldD [BldD of A. missouriensis]), which is a transcriptional regulator involved in morphological development and secondary metabolism in Streptomyces. AmBldD was detected in mycelia during vegetative growth but was barely detected in mycelia during the sporangium-forming phase, in spite of the constant transcription of AmbldD throughout growth. An AmbldD mutant started to form sporangia much earlier than the wild-type strain, and the resulting sporangia were morphologically abnormal. Recombinant AmBldD bound a palindromic sequence, the AmBldD box, located upstream from AmbldD. 3′,5′-Cyclic di-GMP significantly enhanced the in vitro DNA-binding ability of AmBldD. A chromatin immunoprecipitation-sequencing analysis and an in silico search for AmBldD boxes revealed that AmBldD bound 346 genomic loci that contained the 19-bp inverted repeat 5′-NN(G/A)TNACN(C/G)N(G/C)NGTNA(C/T)NN-3′ as the consensus AmBldD-binding sequence. The transcriptional analysis of 27 selected AmBldD target gene candidates indicated that AmBldD should repress 12 of the 27 genes, including bldM, ssgB, whiD, ddbA, and wblA orthologues. These genes are involved in morphological development in Streptomyces coelicolor A3(2). Thus, AmBldD is a global transcriptional regulator that seems to repress the transcription of tens of genes during vegetative growth, some of which are likely to be required for sporangium formation. IMPORTANCE The rare actinomycete Actinoplanes missouriensis undergoes complex morphological differentiation, including sporangium formation. However, almost no molecular biological studies have been conducted on this bacterium. BldD is a key global regulator involved in the morphological development of streptomycetes. BldD orthologues are highly conserved among sporulating actinomycetes, but no BldD orthologues, except one in Saccharopolyspora erythraea, have been studied outside the streptomycetes. Here, it was revealed that the BldD orthologue AmBldD is essential for normal developmental processes in A. missouriensis. The AmBldD regulon seems to be different from the BldD regulon in Streptomyces coelicolor A3(2), but they share four genes that are involved in morphological differentiation in S. coelicolor A3(2).


Author(s):  
Xiaorui Lu ◽  
Qian Wang ◽  
Mengyao Yang ◽  
Zhi Chen ◽  
Jilun Li ◽  
...  

Heat shock response (HSR) is a universal cellular response that promotes survival following temperature increase. In filamentous Streptomyces , which account for ∼70% commercial antibiotic production, HSR is regulated by transcriptional repressors; in particular, the widespread MerR-family regulator HspR has been identified as a key repressor. However, functions of HspR in other biological processes are unknown. The present study demonstrates that HspR pleiotropically controls avermectin production, morphological development, and heat shock and H 2 O 2 stress responses in industrially important species S. avermitilis . HspR directly activated ave structural genes ( aveA1 , aveA2 ) and H 2 O 2 stress-related genes ( katA1 , catR , katA3 , oxyR , ahpC , ahpD ), whereas it directly repressed heat shock genes (HSGs) ( dnaK1-grpE1-dnaJ1-hspR operon, clpB1p , clpB2p , lonAp ) and developmental genes ( wblB , ssgY , ftsH ). HspR interacted with PhoP (response regulator of the widespread PhoPR two-component system) at dnaK1p to co-repress the important dnaK1-grpE1-dnaJ1-hspR operon. PhoP exclusively repressed target HSGs ( htpG , hsp18_1 , hsp18_2 ) different from those of HspR ( clpB1p , clpB2p , lonAp ). A consensus HspR-binding site, 5′-TTGANBBNNHNNNDSTSHN-3′, was identified within HspR target promoter regions, allowing prediction of the HspR regulon involved in broad cellular functions. Taken together, our findings demonstrate a key role of HspR in coordination of a variety of important biological processes in Streptomyces species. IMPORTANCE Our findings are significant to clarify the molecular mechanisms underlying HspR function in Streptomyces antibiotic production, development, and H 2 O 2 stress responses through direct control of its target genes associated with these biological processes. HspR homologs described to date function as transcriptional repressors, but not as activators. Results of the present study demonstrate that HspR acts as a dual repressor/activator. PhoP was shown to crosstalk with HspR at dnaK1p to co-regulate HSR and have its exclusive target HSGs. The novel role of PhoP in HSR further demonstrates the importance of this regulator in Streptomyces . Overexpression of hspR strongly enhanced avermectin production in S. avermitilis wild-type and industrial strains. These findings provide new insights into the regulatory roles and mechanisms of HspR and PhoP, and facilitate methods for antibiotic overproduction in Streptomyces species.


2020 ◽  
Vol 48 (3) ◽  
pp. 1583-1598 ◽  
Author(s):  
Roman Makitrynskyy ◽  
Olga Tsypik ◽  
Desirèe Nuzzo ◽  
Thomas Paululat ◽  
David L Zechel ◽  
...  

Abstract Cyclic dimeric 3′-5′ guanosine monophosphate, c-di-GMP, is a ubiquitous second messenger controlling diverse cellular processes in bacteria. In streptomycetes, c-di-GMP plays a crucial role in a complex morphological differentiation by modulating an activity of the pleiotropic regulator BldD. Here we report that c-di-GMP plays a key role in regulating secondary metabolite production in streptomycetes by altering the expression levels of bldD. Deletion of cdgB encoding a diguanylate cyclase in Streptomycesghanaensis reduced c-di-GMP levels and the production of the peptidoglycan glycosyltransferase inhibitor moenomycin A. In contrast to the cdgB mutant, inactivation of rmdB, encoding a phosphodiesterase for the c-di-GMP hydrolysis, positively correlated with the c-di-GMP and moenomycin A accumulation. Deletion of bldD adversely affected the synthesis of secondary metabolites in S. ghanaensis, including the production of moenomycin A. The bldD-deficient phenotype is partly mediated by an increase in expression of the pleiotropic regulatory gene wblA. Genetic and biochemical analyses demonstrate that a complex of c-di-GMP and BldD effectively represses transcription of wblA, thus preventing sporogenesis and sustaining antibiotic synthesis. These results show that manipulation of the expression of genes controlling c-di-GMP pool has the potential to improve antibiotic production as well as activate the expression of silent gene clusters.


2019 ◽  
Vol 18 (1) ◽  
Author(s):  
Ya Xu ◽  
Di You ◽  
Li-li Yao ◽  
Xiaohe Chu ◽  
Bang-Ce Ye

Abstract Background The choice of phosphate/nitrogen source and their concentrations have been shown to have great influences on antibiotic production. However, the underlying mechanisms responsible for this remain poorly understood. Results We show that nutrient-sensing regulator PhoP (phosphate regulator) binds to and upregulates most of genes (ery cluster genes) involved in erythromycin biosynthesis in Saccharopolyspora erythraea, resulting in increase of erythromycin yield. Furthermore, it was found that PhoP also directly interacted with the promoter region of bldD gene encoding an activator of erythromycin biosynthesis, and induced its transcription. Phosphate limitation and overexpression of phoP increased the transcript levels of ery genes to enhance the erythromycin production. The results are further supported by observation that an over-producing strain of S. erythraea expressed more PhoP than a wild-type strain. On the other hand, nitrogen signal exerts the regulatory effect on the erythromycin biosynthesis through GlnR negatively regulating the transcription of phoP gene. Conclusions These findings provide evidence that PhoP mediates the interplay between phosphate/nitrogen metabolism and secondary metabolism by integrating phosphate/nitrogen signals to modulate the erythromycin biosynthesis. Our study reveals a molecular mechanism underlying antibiotic production, and suggests new possibilities for designing metabolic engineering and fermentation optimization strategies for increasing antibiotics yield.


2009 ◽  
Vol 75 (14) ◽  
pp. 4919-4922 ◽  
Author(s):  
Yukinori Tanaka ◽  
Mamoru Komatsu ◽  
Susumu Okamoto ◽  
Shinji Tokuyama ◽  
Akira Kaji ◽  
...  

ABSTRACT Certain streptomycin resistance mutations (i.e., rpsL and rsmG) result in the overproduction of antibiotics in various actinomycetes. Moreover, rpsL rsmG double-mutant strains show a further increase in antibiotic production. rpsL but not rsmG mutations result in a marked enhancement of oligomycin production in Streptomyces avermitilis and erythromycin production in Saccharopolyspora erythraea, accompanied by increased transcription of a key developmental regulator gene, bldD, in the latter organism.


2010 ◽  
Vol 78 (2) ◽  
pp. 361-379 ◽  
Author(s):  
Chris D. Den Hengst ◽  
Ngat T. Tran ◽  
Maureen J. Bibb ◽  
Govind Chandra ◽  
Brenda K. Leskiw ◽  
...  

2014 ◽  
Vol 80 (8) ◽  
pp. 2417-2428 ◽  
Author(s):  
Sergio Rico ◽  
Ramón I. Santamaría ◽  
Ana Yepes ◽  
Héctor Rodríguez ◽  
Emma Laing ◽  
...  

ABSTRACTThe atypical two-component system (TCS) AbrC1/C2/C3 (encoded bySCO4598,SCO4597, andSCO4596), comprising two histidine kinases (HKs) and a response regulator (RR), is crucial for antibiotic production inStreptomyces coelicolorand for morphological differentiation under certain nutritional conditions. In this study, we demonstrate that deletion of the RR-encoding gene,abrC3(SCO4596), results in a dramatic decrease in actinorhodin (ACT) and undecylprodiginine (RED) production and delays morphological development. In contrast, the overexpression ofabrC3in the parent strain leads to a 33% increase in ACT production in liquid medium. Transcriptomic analysis and chromatin immunoprecipitation with microarray technology (ChIP-chip) analysis of the ΔabrC3mutant and the parent strain revealed that AbrC3 directly controls ACT production by binding to theactII-ORF4promoter region; this was independently verified byin vitroDNA-binding assays. This binding is dependent on the sequence 5′-GAASGSGRMS-3′. In contrast, the regulation of RED production is not due to direct binding of AbrC3 to either theredZorredDpromoter region. This study also revealed other members of the AbrC3 regulon: AbrC3 is a positive autoregulator which also binds to the promoter regions ofSCO0736,bdtA(SCO3328),absR1(SCO6992), andSCO6809. The direct targets share the 10-base consensus binding sequence and may be responsible for some of the phenotypes of the ΔabrC3mutant. The identification of the AbrC3 regulon as part of the complex regulatory network governing antibiotic production widens our knowledge regarding TCS involvement in control of antibiotic synthesis and may contribute to the rational design of new hyperproducer host strains through genetic manipulation of such systems.


1998 ◽  
Vol 180 (6) ◽  
pp. 1556-1562 ◽  
Author(s):  
Margaret K. Pope ◽  
Brian Green ◽  
Janet Westpheling

ABSTRACT Mutants blocked at the earliest stage of morphological development in Streptomyces species are called bld mutants. These mutants are pleiotropically defective in the initiation of development, the ability to produce antibiotics, the ability to regulate carbon utilization, and the ability to send and/or respond to extracellular signals. Here we report the identification and partial characterization of a 99-amino-acid open reading frame (ORF99) that is capable of restoring morphogenesis, antibiotic production, and catabolite control to all of the bldB mutants. Of the existing bld mutants, bldB is of special interest because the phenotype of this mutant is the most pleiotropic. DNA sequence analysis of ORF99 from each of the existingbldB mutants identified base changes either within the coding region of the predicted protein or in the regulatory region of the gene. Primer extension analysis identified an apparent transcription start site. A promoter fusion to the xylEreporter gene showed that expression of bldB is apparently temporally regulated and that the bldB gene product is involved in the regulation of its own expression.


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