Arylmalonate decarboxylase—a highly selective bacterial biocatalyst with unknown function

2016 ◽  
Vol 100 (20) ◽  
pp. 8621-8631 ◽  
Author(s):  
Kenji Miyamoto ◽  
Robert Kourist
2021 ◽  
Vol 1 ◽  
Author(s):  
Anna K. Schweiger ◽  
Kenji Miyamoto ◽  
Robert Kourist

Bacterial arylmalonate decarboxylase (AMDase) is an intriguing cofactor-independent enzyme with a broad substrate spectrum. Particularly, the highly stereoselective transformation of diverse arylmalonic acids into the corresponding chiral α-arylpropionates has contributed to the broad recognition of this biocatalyst. While, more than 30 years after its discovery, the native substrate and function of AMDase still remain undiscovered, contributions from multiple fields have ever since brought forth a powerful collection of AMDase variants to access a wide variety of optically pure α-substituted propionates. This review aims at providing a comprehensive overview of the development of AMDase from an enzyme with unknown function up to a powerful tailored biocatalyst for the synthesis of industrially relevant optically pure α-arylpropionates. Historical perspectives as well as recent achievements in the field will be covered within this work.


Author(s):  
Boris G. Aksenov ◽  
Yuri E. Karyakin ◽  
Svetlana V. Karyakina

Equations, which have nonlinear nonmonotonic dependence of one of the coefficients on an unknown function, can describe processes of heat and mass transfer. As a rule, existing approximate methods do not provide solutions with acceptable accuracy. Numerical methods do not involve obtaining an analytical expression for the unknown function and require studying the convergence of the algorithm used. The value of absolute error is uncertain. The authors propose an approximate method for solving such problems based on Westphal comparison theorems. The comparison theorems allow finding upper and lower bounds of the unknown exact solution. A special procedure developed for the stepwise improvement of these bounds provide solutions with a given accuracy. There are only a few problems for equations with nonlinear nonmonotonic coefficients for which the exact solution has been obtained. One of such problems, presented in this article, shows the efficiency of the proposed method. The results prove that the proposed method for obtaining bounds of the solution of a nonlinear nonmonotonic equation of parabolic type can be considered as a new method of the approximate analytical solution having guaranteed accuracy. In addition, the proposed here method allows calculating the maximum deviation from the unknown exact solution of the results of other approximate and numerical methods.


2020 ◽  
Vol 85 (3) ◽  
pp. 626-629
Author(s):  
Hisashi Muramatsu ◽  
Hiroki Maguchi ◽  
Taisuke Harada ◽  
Takehiro Kashiwagi ◽  
Chul-Sa Kim ◽  
...  

ABSTRACT Here, we report the identification of the gene encoding a novel enzyme, 3-(5-oxo-2-thioxoimidazolidin-4-yl) propionic acid desulfhydrase, in Burkholderia sp. HME13. The enzyme converts 3-(5-oxo-2-thioxoimidazolidin-4-yl) propionic acid and H2O to 3-(2,5-dioxoimidazolidin-4-yl) propionic acid and H2S. Amino acid sequence analysis of the enzyme indicates that it belongs to the DUF917 protein family, which consists of proteins of unknown function.


Genetics ◽  
2001 ◽  
Vol 157 (1) ◽  
pp. 79-89 ◽  
Author(s):  
Mercedes Gallardo ◽  
Andrés Aguilera

Abstract Given the importance of the incidence of recombination in genomic instability, it is of great interest to know the elements or processes controlling recombination in mitosis. One such process is transcription, which has been shown to induce recombination in bacteria, yeast, and mammals. To further investigate the genetic control of the incidence of recombination and genetic instability and, in particular, its connection with transcription, we have undertaken a search for hyperrecombination mutants among a large number of strains deleted in genes of unknown function. We have identified a new gene, THP1 (YOL072w), whose deletion mutation strongly stimulates recombination between repeats. In addition, thp1Δ impairs transcription, a defect that is particularly strong at the level of elongation through particular DNA sequences such as lacZ. The hyperrecombination phenotype of thp1Δ cells is fully dependent on transcription elongation of the repeat construct. When transcription is impeded either by shutting off the promoter or by using a premature transcription terminator, hyperrecombination between repeats is abolished, providing new evidence that transcription-elongation impairment may be a source of recombinogenic substrates in mitosis. We show that Thp1p and two other proteins previously shown to control transcription-associated recombination, Hpr1p and Tho2p, act in the same “pathway” connecting transcription elongation with the incidence of mitotic recombination.


2012 ◽  
Vol 40 (4) ◽  
pp. 836-841 ◽  
Author(s):  
Jonathan Houseley

Unstable non-coding RNAs are produced from thousands of loci in all studied eukaryotes (and also prokaryotes), but remain of largely unknown function. The present review summarizes the mechanisms of eukaryotic non-coding RNA degradation and highlights recent findings regarding function. The focus is primarily on budding yeast where the bulk of this research has been performed, but includes results from higher eukaryotes where available.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Nicola A. Thompson ◽  
Marco Ranzani ◽  
Louise van der Weyden ◽  
Vivek Iyer ◽  
Victoria Offord ◽  
...  

AbstractGenetic redundancy has evolved as a way for human cells to survive the loss of genes that are single copy and essential in other organisms, but also allows tumours to survive despite having highly rearranged genomes. In this study we CRISPR screen 1191 gene pairs, including paralogues and known and predicted synthetic lethal interactions to identify 105 gene combinations whose co-disruption results in a loss of cellular fitness. 27 pairs influence fitness across multiple cell lines including the paralogues FAM50A/FAM50B, two genes of unknown function. Silencing of FAM50B occurs across a range of tumour types and in this context disruption of FAM50A reduces cellular fitness whilst promoting micronucleus formation and extensive perturbation of transcriptional programmes. Our studies reveal the fitness effects of FAM50A/FAM50B in cancer cells.


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