Identification of key genes and construction of microRNA–mRNA regulatory networks in bladder smooth muscle cell response to mechanical stimuli using microarray expression profiles and bioinformatics analysis

2017 ◽  
Vol 36 (2) ◽  
pp. 241-247 ◽  
Author(s):  
Liao Peng ◽  
De-Yi Luo
2012 ◽  
Vol 48 (2) ◽  
pp. 84-96 ◽  
Author(s):  
Yongmu Zheng ◽  
Shaohua Chang ◽  
Ettickan Boopathi ◽  
Sandra Burkett ◽  
Mary John ◽  
...  

2004 ◽  
Vol 20 (1) ◽  
pp. 36-44 ◽  
Author(s):  
Rosalyn M. Adam ◽  
Samuel H. Eaton ◽  
Carlos Estrada ◽  
Ashish Nimgaonkar ◽  
Shu-Ching Shih ◽  
...  

Application of mechanical stimuli has been shown to alter gene expression in bladder smooth muscle cells (SMC). To date, only a limited number of “stretch-responsive” genes in this cell type have been reported. We employed oligonucleotide arrays to identify stretch-sensitive genes in primary culture human bladder SMC subjected to repetitive mechanical stimulation for 4 h. Differential gene expression between stretched and nonstretched cells was assessed using Significance Analysis of Microarrays (SAM). Expression of 20 out of 11,731 expressed genes (∼0.17%) was altered >2-fold following stretch, with 19 genes induced and one gene (FGF-9) repressed. Using real-time RT-PCR, we tested independently the responsiveness of 15 genes to stretch and to platelet-derived growth factor-BB (PDGF-BB), another hypertrophic stimulus for bladder SMC. In response to both stimuli, expression of 13 genes increased, 1 gene (FGF-9) decreased, and 1 gene was unchanged. Six transcripts (HB-EGF, BMP-2, COX-2, LIF, PAR-2, and FGF-9) were evaluated using an ex vivo rat model of bladder distension. HB-EGF, BMP-2, COX-2, LIF, and PAR-2 increased with bladder stretch ex vivo, whereas FGF-9 decreased, consistent with expression changes observed in vitro. In silico analysis of microarray data using the FIRED algorithm identified c-jun, AP-1, ATF-2, and neurofibromin-1 (NF-1) as potential transcriptional mediators of stretch signals. Furthermore, the promoters of 9 of 13 stretch-responsive genes contained AP-1 binding sites. These observations identify stretch as a highly selective regulator of gene expression in bladder SMC. Moreover, they suggest that mechanical and growth factor signals converge on common transcriptional regulators that include members of the AP-1 family.


Sign in / Sign up

Export Citation Format

Share Document