scholarly journals Characterization of the first Pseudomonas grimontii bacteriophage, PMBT3

2021 ◽  
Author(s):  
Sabrina Sprotte ◽  
Erik Brinks ◽  
Natalia Wagner ◽  
Andrew M. Kropinski ◽  
Horst Neve ◽  
...  
Keyword(s):  
Electron Microscopy ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Phage Genome ◽  
Genome Sequences ◽  
Significant Similarity ◽  
Protein Encoding ◽  
The Family ◽  
Encoding Genes

AbstractThe complete genome sequence of the virulent bacteriophage PMBT3, isolated on the proteolytic Pseudomonas grimontii strain MBTL2-21, showed no significant similarity to other known phage genome sequences, making this phage the first reported to infect a strain of P. grimontii. Electron microscopy revealed PMBT3 to be a member of the family Siphoviridae, with notably long and flexible whiskers. The linear, double-stranded genome of 87,196 bp has a mol% G+C content of 60.4 and contains 116 predicted protein-encoding genes. A putative tellurite resistance (terB) gene, originally reported to occur in the genome of a bacterium, was detected in the genome of phage PMBT3.

scholarly journals Genome Sequence of the Piezophilic, Mesophilic Sulfate-Reducing Bacterium Desulfovibrio indicus J2 T

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Junwei Cao ◽  
Lois Maignien ◽  
Zongze Shao ◽  
Karine Alain ◽  
Mohamed Jebbar
Keyword(s):  
Sulfate Reduction ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Noncoding Rnas ◽  
Sulfate Reducing ◽  
The Family ◽  
Encoding Genes

The complete genome sequence of Desulfovibrio indicus J2 T , a member of the family Desulfovibrionaceae , consists of 3,966,573-bp in one contig and encodes 3,461 predicted genes, 5 noncoding RNAs, 3 rRNAs operons, and 52 tRNA-encoding genes. The genome is consistent with a heterotrophic, anaerobic lifestyle including the sulfate reduction pathway.

scholarly journals Complete Genome Sequence of Escherichia coli Podophage Penshu1

2019 ◽  
Vol 8 (38) ◽  
Author(s):  
Douglas Pechacek ◽  
Myung Hwangbo ◽  
Russell Moreland ◽  
Mei Liu ◽  
Jolene Ramsey
Keyword(s):  
Escherichia Coli ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Coliform Bacteria ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
E Coli ◽  
Protein Encoding ◽  
Encoding Genes

Escherichia coli 4s is a Gram-negative bacterium found in the equine intestinal ecosystem alongside diverse other coliform bacteria and bacteriophages. This announcement describes the complete genome of the T7-like E. coli 4s podophage Penshu1. From its 39,263-bp genome, 54 protein-encoding genes and a 179-bp terminal repeat were predicted.

scholarly journals Complete Genome Sequence of Pseudomonas balearica Strain EC28, an Iron-Oxidizing Bacterium Isolated from Corroded Steel

2020 ◽  
Vol 9 (19) ◽  
Author(s):  
Silvia J. Salgar-Chaparro ◽  
Genis Castillo-Villamizar ◽  
Anja Poehlein ◽  
Rolf Daniel ◽  
Laura L. Machuca
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Content Type ◽  
Protein Encoding ◽  
Encoding Genes ◽  
Pseudomonas Balearica

Pseudomonas balearica strain EC28 is an iron-oxidizing bacterium isolated from corroded steel at a floating production storage and offloading facility in Australia. Here, we report its complete genome sequence, which comprises 4,642,566 bp with a GC content of 64.43%. The genome harbors 4,164 predicted protein-encoding genes.

scholarly journals Complete genome sequence of the newly discovered temperate Clostridioides difficile bacteriophage phiCDKH01 of the family Siphoviridae

2021 ◽  
Author(s):  
Krzysztof Hinc ◽  
Monika Kabała ◽  
Adam Iwanicki ◽  
Gajane Martirosian ◽  
Alessandro Negri ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Phylogenetic Analysis ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Phage Genome ◽  
Putative Orfs ◽  
Dna Molecule ◽  
Clostridioides Difficile ◽  
Double Stranded Dna ◽  
The Family

AbstractA temperate siphovirus, phiCDKH01, was obtained from a clinical isolate of Clostridioides difficile. The phage genome is a 45,089-bp linear double-stranded DNA molecule with an average G+C content of 28.7%. It shows low similarity to known phage genomes, except for phiCD24-1. Genomic and phylogenetic analysis revealed that phiCDKH01 is a newly discovered phage. Sixty-six putative ORFs were predicted in the genome, 37 of which code for proteins with predicted functions. The phiCDKH01 prophage was localized in the host genome. The results of this study increase our knowledge about the genetic diversity of tailed phages.

scholarly journals Complete Genome Sequence of Sporomusa termitida DSM 4440T

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Anja Poehlein ◽  
Jacqueline Hollensteiner ◽  
Annika Dreyer ◽  
Ivana Gavrilova ◽  
Rolf Daniel
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Intestinal Content ◽  
Circular Chromosome ◽  
Content Type ◽  
Protein Encoding ◽  
Encoding Genes

Sporomusa termitida type strain DSM 4440 was isolated from the intestinal content of the termite Nasutitermes nigriceps. The genome consists of one circular chromosome (5,185,220 bp) and a megaplasmid (131,121 bp) with an overall G+C content of 49.11%. It harbors 4,764 predicted protein-encoding genes.

scholarly journals Complete Genome Sequence of the Biocontrol Agent YeastRhodotorula kratochvilovaeStrain LS11

2018 ◽  
Vol 6 (10) ◽  
Author(s):  
Cecilia Miccoli ◽  
Davide Palmieri ◽  
Filippo De Curtis ◽  
Giuseppe Lima ◽  
Giuseppe Ianiri ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Genome Annotation ◽  
Complete Genome ◽  
Plant Pathogens ◽  
Biocontrol Agent ◽  
Antagonistic Activity ◽  
Protein Encoding ◽  
Encoding Genes

ABSTRACTRhodotorula kratochvilovaestrain LS11 is a biocontrol agent (BCA) selected for its antagonistic activity against several plant pathogens both in the field and postharvest. Genome assembly includes 62 contigs for a total of 22.56 Mbp and a G+C content of 66.6%. Genome annotation predicts 7,642 protein-encoding genes.

scholarly journals Genome Characterization of Two Carrot Virus Y Isolates from Australia

2020 ◽  
Vol 9 (15) ◽  
Author(s):  
Wycliff M. Kinoti ◽  
Jane R. Moran ◽  
Cherie Gambley ◽  
Brendan C. Rodoni ◽  
Fiona E. Constable
Keyword(s):  
Genome Sequence ◽  
Deep Sequencing ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nucleotide Identity ◽  
Genome Sequences ◽  
Genome Characterization ◽  
Type Isolate

The near-complete genome sequence of the original Carrot virus Y (CarVY) type isolate (CarVY-Vic) collected in 1999 in Victoria, Australia, and a near-complete genome sequence from an isolate collected in 2019 from the same region (CarVY-2-22) were determined following deep sequencing. The two CarVY genome sequences shared 98% nucleotide identity.

scholarly journals Complete Genome Sequence of Salmonella enterica Bacteriophage PRF-SP1

2021 ◽  
Vol 10 (47) ◽  
Author(s):  
Prasanna Mutusamy ◽  
Sasireigga Jaya Jothi ◽  
Su Yin Lee ◽  
Bent Petersen ◽  
Thomas Sicheritz-Ponten ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Salmonella Enterica ◽  
Complete Genome ◽  
National Park ◽  
The Novel ◽  
Content Type ◽  
Double Stranded Dna ◽  
Protein Encoding ◽  
Encoding Genes

We characterized the complete genome sequence of the lytic Salmonella enterica bacteriophage PRF-SP1, isolated from Penang National Park, a conserved rainforest in northern Malaysia. The novel phage species from the Autographiviridae family has a 39,966-bp double-stranded DNA (dsDNA) genome containing 49 protein-encoding genes and shares 90.96% similarity with Escherichia phage DY1.

scholarly journals Complete Genome Sequence of Streptomyces Siphophage Sycamore

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Xing-Han Zhang ◽  
Alejandra Marquez ◽  
James Clark ◽  
Isla Hernandez ◽  
Madeline Rivera ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Phage Genome ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Streptomyces sp. strain Mg1 is a competitive soil-dwelling bacterium that secretes antibiotics that inhibit growth of Bacillus subtilis. Here, we present the genome sequence of Sycamore, a 44,694-bp Streptomyces sp. Mg1 siphophage with 66 predicted protein-coding genes, that is similar to phage genome sequences in the Lomovskayavirus genus.

scholarly journals Complete Genome Sequence of Sulfitobacter Phage ϕGT1, Isolated from a Tidal Flat

2020 ◽  
Vol 9 (33) ◽  
Author(s):  
Chung Y. Hwang ◽  
Yirang Cho ◽  
Gwang I. Jang ◽  
Byung C. Cho ◽  
Stephen C. Hardies
Keyword(s):  
Genome Sequence ◽  
Tidal Flat ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Coastal Sediment ◽  
Organic Sulfur ◽  
Sulfur Cycling ◽  
Marine Environments ◽  
Protein Encoding ◽  
Encoding Genes

ABSTRACT The Sulfitobacter bacteria are ubiquitous and important players in organic sulfur cycling in marine environments. Here, we report the complete genome sequence of ϕGT1 infecting Sulfitobacter sp. HGT1, both of which were isolated from coastal sediment. ϕGT1 has a 40,019-bp genome containing 69 predicted protein-encoding genes.

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