Real-time PCR targeting OmpA gene for detection of Cronobacter spp. in powdered infant formula

2013 ◽  
Vol 22 (2) ◽  
pp. 309-313 ◽  
Author(s):  
Xiaohui Dong ◽  
Qingping Wu ◽  
Kui Wu ◽  
Jumei Zhang
2020 ◽  
Author(s):  
Riqin Wu ◽  
Xiaojiao Song ◽  
Xiaoping Gong ◽  
Gang Wang ◽  
Xinsheng Wang ◽  
...  

Abstract Contamination of Cronobacter spp. in powdered infant formulas is a severe food safety problem. The present study developed a rapid and sensitive Simultaneous Amplification and Testing (SAT) system for the detection of Cronobacter spp. in powdered infant formula. SAT detection system is based on fluorescence real-time isothermal RNA amplification and mainly includes pre-enrichment, RNA isolation and detection by fluorescence real-time RNA isothermal amplification. The amplification targets 16 s/23 s rRNA for the specific detection and rapid identification of Cronobacter spp. and can accurately detect viable strains in infant formulas and other food products. Here, six C. sakazakii strains and 25 references strains were examined using one pair of primers, having the accuracy of 100% in reference to conventional methods like ISO-IDF 22964 and real-time PCR. The SAT assay was proved to be highly sensitive with a detection limit of 102 CFU/mL without pre-enrichment for powdered infant formula. After 3 h, 4 h and 8 h enrichment, the sensitivity was increased up to 100, 10− 1 and 10− 3 CFU/mL of Cronobacter spp., respectively. The SAT system including pre-enrichment performed for Cronobacter spp. detection was less than 4 h, dramatically shortened, in comparison to several days using standard culturing method and overnight using pre-enrichment real-time PCR method. And more importantly, the SAT assay can accurately distinguish viable strains from the dead one. Taken together, the SAT assay combined with pre-enrichment established in the present study should provide a rapid, sensitive, efficient and specific method for direct detection of Cronobacter spp. in powdered infant formula. Moreover, a full automatic food-borne pathogenic bacteria detector was developed based on the SAT assay.


2010 ◽  
Vol 73 (6) ◽  
pp. 1016-1022 ◽  
Author(s):  
YI CHEN ◽  
KWANG-YONG SONG ◽  
ERIC W. BROWN ◽  
KEITH A. LAMPEL

Enterobacter sakazakii causes severe maladies and, in some cases, is fatal among infants. Powdered infant formula (PIF) contaminated with E. sakazakii has been documented as a potential cause of several outbreaks involving infants. This study describes the development of a method for the isolation and detection of E. sakazakii from PIF. It combines Taqman real-time PCR, Brilliance E. sakazakii and R&F chromogenic agars, and RAPID ID 32E biochemical tests. This method provides an expedient analysis within 1 to 2 days depending on the amount and stress status of E. sakazakii organisms and competing microorganisms in PIF. The real-time PCR has bifunctional applications, including both screening and culture confirmation of E. sakazakii.


2012 ◽  
Vol 75 (9) ◽  
pp. 1572-1579 ◽  
Author(s):  
JUN-ICHI MINAMI ◽  
TAKASHI SOEJIMA ◽  
TOMOKO YAESHIMA ◽  
KEIJI IWATSUKI

The goal of this study was to establish a rapid assay for the specific detection of viable Cronobacter sakazakii in powdered infant formula (PIF). Samples were subjected to treatment multiple times with ethidium monoazide with a concentration gradient (gEMA) prior to PCR to discriminate viable from dead C. sakazakii cells. To improve the current detection limits, we developed a new buffer for direct quantitative real-time PCR (DqPCR) without DNA isolation. Using 17 PIF samples, our rapid assay was compared with the new U.S. Food and Drug Administration (FDA) method published in the Bacteriological Analytical Manual in 2012. Although both the new FDA method and our rapid assay, which consists of DqPCR combined with gEMA (gEMADqPCR), produced negative results for all 17 PIF samples, 5 of the 17 PIFs were positive by DqPCR when they were not treated with EMA. Furthermore, for PIF samples artificially contaminated with viable C. sakazakii, gEMA-DqPCR successfully detected between 1 and 9 CFU of viable C. sakazakii in 300 g of PIF within 9 h, including a 6-h preincubation. Our results indicate that multiple EMA treatments are required to avoid false-positive results due to the contamination of commercial PIF with dead or injured C. sakazakii cells. Our rapid assay may also improve the sensitivity of the screening portion required by the new FDA method published in the Bacteriological Analytical Manual in 2012.


2020 ◽  
Vol 9 (1) ◽  
pp. 54
Author(s):  
Salem Belkessa ◽  
Daniel Thomas-Lopez ◽  
Karim Houali ◽  
Farida Ghalmi ◽  
Christen Rune Stensvold

The molecular epidemiology of giardiasis in Africa remains unclear. A study was carried out across four hospitals in Algeria. A total of 119 fecal samples from 55 children, 37 adults, and 27 individuals of undetermined age, all scored positive for intestinal parasites by microscopy, and were screened by real-time PCR for Giardia. Molecular characterization of Giardia was performed by assemblage-specific PCR and PCR targeting the triose phosphate isomerase gene (tpi). Of the 119 samples, 80 (67%) were Giardia-positive by real-time PCR. For 48 moderately-highly real-time PCR-positive samples, tpi genotyping assigned 22 samples to Assemblage A and 26 to Assemblage B. Contrary to Assemblage A, Assemblage B exhibited substantial genetic diversity and allelic heterozygosity. Assemblage-specific PCR proved to be specific for discriminating Assemblage A or B but not as sensitive as tpi genotyping. We confirmed that real-time PCR is more sensitive than microscopy for detecting Giardia in stool samples and that robust amplification and sequencing of the tpi gene is feasible when moderate-to-strongly real-time PCR-positive samples are used. This study is one of the few performed in Africa providing genotyping data on Giardia infections in humans. Both assemblages A and B were commonly seen and not associated with specific sociodemographic data.


2021 ◽  
Vol 41 (5) ◽  
pp. 293-298
Author(s):  
Mehmet Karabey ◽  
Hüseyin Can ◽  
Tülay Öncü Öner ◽  
Mert Döşkaya ◽  
Sedef Erkunt Alak ◽  
...  

BACKGROUND: Cryptosporidium spp . is a protozoan parasite that infects many vertebrate animals, including humans. Since Cryptosporidium spp . can cause chronic life-threatening diarrhea and severe malabsorption in immunocompromised patients, we investigated the prevalence of this parasite among patients undergoing chemotherapy for malignant solid tumors. OBJECTIVE: Investigate the prevalence of Cryptosporidium spp . in stool samples. DESIGN: Cross-sectional. SETTING: Tertiary care. PATIENTS AND METHODS: Stool samples were collected from adult patients with malignant solid tumors receiving chemotherapy and diarrhea. Cryptosporidium spp . prevalence was determined using Ziehl–Neelsen staining, ELISA, and real-time PCR targeting of the COWP gene. MAIN OUTCOME MEASURE: The prevalence of Cryptosporidium spp . in patients undergoing chemotherapy for malignant solid tumors. SAMPLE SIZE: 94 RESULTS: The prevalence was 2.1% (2/94), 5.3% (5/94), and 5.3% (5/94) as detected by Ziehl–Neelsen staining, real-time PCR and ELISA, respectively. The prevalence reached 8.5% (8/94) using all results obtained from the three methods. Among eight positive stool samples, four were positive by at least two different methods (Ziehl–Neelsen staining-ELISA or ELISA-real-time PCR) whereas the remaining four were positive by either ELISA or real-time PCR. CONCLUSION: These findings show the risk of cryptosporidiosis in cancer patients and the necessity to use at least two diagnostic methods during the diagnosis of cryptosporidiosis to reach more accurate and trustworthy results. LIMITATIONS: Further studies with a larger sample size are recommended. CONFLICT OF INTEREST: None.


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