Drivers of genetic diversity in plant populations differ between semi-natural grassland types

Author(s):  
Christoph Reisch ◽  
Theresa A. Lehmair ◽  
Ellen Pagel ◽  
Peter Poschlod
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Agnieszka Sutkowska ◽  
Józef Mitka ◽  
Tomasz Warzecha ◽  
Jakub Bunk ◽  
Julia Rutkowska ◽  
...  

AbstractThe genetic diversity in 11 populations of Gladiolus imbricatus in five mountain ranges, including the Tatra, Pieniny, Gorce, Beskid Niski (Western Carpathians) and Bieszczady Mts (Eastern Carpathians), was studied with inter-simple sequence repeat (ISSR) markers. The species is a perennial plant occurring in open and semi-open sites of anthropogenic origin (meadows and forest margins). We checked a hypothesis on the microrefugial character of the plant populations in the Pieniny Mts, a small calcareous Carpathian range of complicated relief that has never been glaciated. Plant populations in the Tatra and Pieniny Mts had the highest genetic diversity indices, pointing to their long-term persistence. The refugial vs. the non-refugial mountain ranges accounted for a relatively high value of total genetic variation [analysis of molecular variance (AMOVA), 14.12%, p = 0.003]. One of the Pieniny populations was of hybridogenous origin and shared genetic stock with the Tatra population, indicating there is a local genetic melting pot. A weak genetic structuring of populations among particular regions was found (AMOVA, 4.5%, p > 0.05). This could be an effect of the frequent short-distance and sporadic long-distance gene flow. The dispersal of diaspores between the remote populations in the Western Carpathians and Eastern Carpathians could be affected by the historical transportation of flocks of sheep from the Tatra to Bieszczady Mts.


Diversity ◽  
2020 ◽  
Vol 12 (11) ◽  
pp. 421
Author(s):  
Luciana Cristina Vitorino ◽  
Mateus Neri Oliveira Reis ◽  
Layara Alexandre Bessa ◽  
Ueric José Borges de Souza ◽  
Fabiano Guimarães Silva

The anthropization of the landscape of the Cerrado biome that has occurred over the past few decades has fragmented its natural environments, impacting the connectivity of the plant populations and altering their gene flow. Plant species may also reduce population size in response to sub-optimal climatic and environmental conditions, and observed distribution patterns may align with theoretical schemes, such as the center–periphery model, that is, it is possible that populations on the edge have lower genetic diversity than center populations, theoretically submitted to environmental conditions closer to the optimum. In this context, we evaluate whether the genetic diversity and inbreeding coefficients of Cerrado plant species are affected by landscape features and climate characteristics, and in particular, if the distribution of the genetic diversity of these plants is consistent with the center–periphery model. To do this, we conducted a literature search for genetic studies of Cerrado plant populations using Scopus, Web of Science, and Scielo databases and the species found were used as a proxy to explore patterns throughout the biome. The data were analyzed using generalized linear mixed models (GLMM) and multiple matrix regressions (MMRRs) to evaluate the effects of landscape features and climatic variables on the observed (HO) and expected heterozygosity (HE), allelic richness (AR) and inbreeding (Fis) patterns of the local populations. The landscape was evaluated in terms of the percentage land cover of agriculture (AG), forestry (FO), remnant vegetation (RV), urban areas (UA), pasture (PA), and water (WA) within buffers of 1 km, 3 km, and 5 km around the study populations. We analyzed 121 populations of 31 plant species. The GLMMs showed that HO was affected by FO regardless of buffer size, while HE was also affected by FO, but also by WA and UA. AR was affected by WA and UA in all three buffer zones while the Fis was affected by FO and AU. The MMRRs showed that WA may affect HO, HE, and Fis within the 1 km buffer, while FO affects HO and UA affects AR within the 5 km buffer. In the case of the 1 km and 3 km buffers, however, the geographic distance between populations was identified as a factor determining the genetic diversity and inbreeding indices, indicating that isolation by distance may be an important factor defining the breeding patterns of the Cerrado plant populations. The GLMMs and MMRRs also showed that the mean annual temperature (MAT) and, to a lesser extent, isothermality (ISO) can explain the variation in genetic diversity observed in the Cerrado plant populations. We also found that the center–periphery model fits the distribution pattern observed in most of the species evaluated, including Annona crassiflora,Annona coriacea, Copaifera langsdorffii, and Eugenia dysenterica. Our results indicate that changes in the climate and the landscape of Brazilian Cerrado must be considered carefully to guarantee minimizing the impacts of these processes on the genetic diversity of Cerrado plant species and ensuring the long-term conservation of these species in this biome.


2016 ◽  
Vol 8 (11) ◽  
pp. 51 ◽  
Author(s):  
Bardales-Lozano Ricardo Manuel ◽  
Edvan Alves Chagas ◽  
Oscar Smiderle ◽  
Abanto-Rodriguez Carlos ◽  
Pollyana Cardoso Chagas ◽  
...  

<p>The objective in the present work was to evaluate the genetic diversity among 15 indigenous populations of camu-camu plants, identifying important characteristics in the evaluation of genetic divergence, based on the initial characteristics of the seedlings. Seeds extracted from fruits deriving from fifteen indigenous populations of camu-camu were collected. The experimental design was entirely random, with fifteen treatments (populations), and fifteen repetitions (each sub-sample), considering 30 seeds per subsample as an experimental unit. At 40 days after sowing the following were evaluated: the percentage of emergence, the index of emergence velocity, the average time of germination, the height of the seedling and the number of leaves. The data obtained was submitted to variance analysis, and the averages were grouped by the Scott and Knott (1974) test. The genetic diversity was studied according to the Tocher grouping method, based on the Mahalanobis distance (D<sup>2</sup><sub>ii</sub>) and canonical variables. The fifteen populations are divergent among themselves and the Rio Branco Estirão do Veado, Rio Branco Onofre and Igarapé Agua Boa populations are indicated to have hybridization with other populations due to the high divergence, as well as the rates of emergence and vigor of the seedlings. The height of the seedlings, percentage and speed of emergence, are those that most indicate genetic divergence. The measuring techniques of genetic divergence, canonical variables Mahalanobis distances are useful and corroborating in the evaluation of genetic divergence of the camu-camu plant.</p>


2020 ◽  
Vol 28 (3) ◽  
pp. 583-593 ◽  
Author(s):  
Adrienne Basey St. Clair ◽  
Peter W. Dunwiddie ◽  
Jeremie B. Fant ◽  
Thomas N. Kaye ◽  
Andrea T. Kramer

HortScience ◽  
2003 ◽  
Vol 38 (6) ◽  
pp. 1191-1197 ◽  
Author(s):  
S. Jorge ◽  
M.C. Pedroso ◽  
D.B. Neale ◽  
G. Brown

Random amplified polymorphic DNA (RAPD) analysis was used to estimate genetic similarities between Portuguese Camelliasinensis (L.) O. Kuntze (tea plant) accessions and those obtained from the germplasm collections from the Tea Research Foundation of Kenya and from the National Research Institute of Vegetables, Ornamental Plants, and Tea of Japan. The accessions studied are taxonomically classified as C. sinensis, var. sinensis, var. assamica, or ssp. lasiocalyx. A set of 118 ten-base arbitrary primers was tested, of which 25 produced informative, reproducible, and polymorphic banding patterns. These primers were used to amplify DNA from 71 tea plant accessions and produced a total of 282 bands, of which 195 were polymorphic. The phenotypic frequencies were calculated using Shannon's Index and employed in estimating genetic diversity within tea plant populations. Our study demonstrates that tea plant populations, including the Portuguese tea plants, show considerable genetic variability. From the UPGMA cluster analysis based on a matrix using the Jaccard coefficient, it was possible to distinguish the Portuguese tea plants from the remaining accessions. The RAPD markers discriminated the three C. sinensis varieties. Moreover, within each variety cluster, subclusters formed according to geographic distribution. The RAPD analysis also separated the commercially cultivated tea plants from the Taiwanese wild tea plants. The present results show that RAPD analysis constitutes a good method to estimate genetic diversity within C. sinensis, and to differentiate C. sinensis accessions according to taxonomic variety and geographical distribution.


Author(s):  
Richard Frankham ◽  
Jonathan D. Ballou ◽  
Katherine Ralls ◽  
Mark Eldridge ◽  
Michele R. Dudash ◽  
...  

The biological diversity of the planet is being rapidly depleted due to the direct and indirect consequences of human activity. As the size of animal and plant populations decrease and fragmentation increases, loss of genetic diversity reduces their ability to adapt to changes in the environment, with inbreeding and reduced fitness inevitable consequences for many species. Many small isolated populations are going extinct unnecessarily. In many cases, such populations can be genetically rescued by gene flow into them from another population within the species, but this is very rarely done. This novel and authoritative book addresses the issues involved in genetic management of fragmented animal and plant populations, including inbreeding depression, loss of genetic diversity and elevated extinction risk in small isolated populations, augmentation of gene flow, genetic rescue, causes of outbreeding depression and predicting its occurrence, desirability and implementation of genetic translocations to cope with climate change, and defining and diagnosing species for conservation purposes.


2018 ◽  
Vol 12 (1) ◽  
pp. 99-108 ◽  
Author(s):  
Martin Leipold ◽  
Simone Tausch ◽  
Markus Hirtreiter ◽  
Peter Poschlod ◽  
Christoph Reisch

2004 ◽  
Vol 82 (12) ◽  
pp. 1705-1710 ◽  
Author(s):  
Ian C Robertson ◽  
Amy Colleen Ulappa

Plant populations are often spatially structured owing to limited dispersal of pollen and seed. Mating between neighboring individuals in such populations often leads to reduced reproductive performance relative to matings between distant individuals. This response, which may be a result of inbreeding depression or prezygotic mating barriers, was investigated for slickspot peppergrass, Lepidium papilliferum L. (Brassicaceae), a rare insect-pollinated mustard endemic to sagebrush–steppe habitat in southwestern Idaho. Through hand pollination experiments we found that individual plants receiving pollen from distant sources (75–100 m and 6.5–20 km away) had significantly higher percent fruit sets than those relying on pollen from neighboring plants (<1 m away). Self pollinated plants produced little or no fruit. These results suggest that L. papilliferum relies primarily, if not exclusively, on outcrossed pollination, and that its populations are spatially structured. Conservation efforts should therefore strive to protect sufficiently large areas of suitable habitat to ensure maintenance of genetic diversity and preserve or enhance connectivity between populations.Key words: Brassicaceae, inbreeding, outbreeding, population spatial structure, rare species.


eLife ◽  
2015 ◽  
Vol 4 ◽  
Author(s):  
Meredith C Schuman ◽  
Silke Allmann ◽  
Ian T Baldwin

Plants are at the trophic base of terrestrial ecosystems, and the diversity of plant species in an ecosystem is a principle determinant of community structure. This may arise from diverse functional traits among species. In fact, genetic diversity within species can have similarly large effects. However, studies of intraspecific genetic diversity have used genotypes varying in several complex traits, obscuring the specific phenotypic variation responsible for community-level effects. Using lines of the wild tobacco Nicotiana attenuata genetically altered in specific well-characterized defense traits and planted into experimental populations in their native habitat, we investigated community-level effects of trait diversity in populations of otherwise isogenic plants. We conclude that the frequency of defense traits in a population can determine the outcomes of these traits for individuals. Furthermore, our results suggest that some ecosystem-level services afforded by genetically diverse plant populations could be recaptured in intensive monocultures engineered to be functionally diverse.


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