Abundant conserved microRNA target sites in the 5′-untranslated region and coding sequence

Genetica ◽  
2009 ◽  
Vol 137 (2) ◽  
pp. 159-164 ◽  
Author(s):  
Xue Zhou ◽  
Xuchu Duan ◽  
Jinjun Qian ◽  
Fei Li
2014 ◽  
Vol 207 (4) ◽  
pp. 168-169 ◽  
Author(s):  
Lucia Pedace ◽  
Angela M. Cozzolino ◽  
Luana Barboni ◽  
Carmelilia De Bernardo ◽  
Paola Grammatico ◽  
...  

2015 ◽  
Vol 89 (12) ◽  
pp. 6167-6170 ◽  
Author(s):  
Jessica K. Fiege ◽  
Ryan A. Langlois

Influenza A viruses display a broad cellular tropism within the respiratory tracts of mammalian hosts. Uncovering the relationship between tropism and virus immunity, pathogenesis, and transmission will be critical for the development of therapeutic interventions. Here we discuss recent developments of several recombinant strains of influenza A virus. These viruses have inserted reporters to track tropism, microRNA target sites to restrict tropism, or barcodes to assess transmission dynamics, expanding our understanding of pathogen-host interactions.


2006 ◽  
Vol 174 (5) ◽  
pp. 677-687 ◽  
Author(s):  
Hak Kyun Kim ◽  
Yong Sun Lee ◽  
Umasundari Sivaprasad ◽  
Ankit Malhotra ◽  
Anindya Dutta

Three muscle-specific microRNAs, miR-206, -1, and -133, are induced during differentiation of C2C12 myoblasts in vitro. Transfection of miR-206 promotes differentiation despite the presence of serum, whereas inhibition of the microRNA by antisense oligonucleotide inhibits cell cycle withdrawal and differentiation, which are normally induced by serum deprivation. Among the many mRNAs that are down-regulated by miR-206, the p180 subunit of DNA polymerase α and three other genes are shown to be direct targets. Down-regulation of the polymerase inhibits DNA synthesis, an important component of the differentiation program. The direct targets are decreased by mRNA cleavage that is dependent on predicted microRNA target sites. Unlike small interfering RNA–directed cleavage, however, the 5′ ends of the cleavage fragments are distributed and not confined to the target sites, suggesting involvement of exonucleases in the degradation process. In addition, inhibitors of myogenic transcription factors, Id1-3 and MyoR, are decreased upon miR-206 introduction, suggesting the presence of additional mechanisms by which microRNAs enforce the differentiation program.


PLoS ONE ◽  
2014 ◽  
Vol 9 (1) ◽  
pp. e86061 ◽  
Author(s):  
Yang Mi ◽  
Lijuan Wang ◽  
Lu Zong ◽  
Meili Pei ◽  
Qingyang Lu ◽  
...  

PLoS ONE ◽  
2011 ◽  
Vol 6 (7) ◽  
pp. e21851 ◽  
Author(s):  
Nicole Stone ◽  
Faith Pangilinan ◽  
Anne M. Molloy ◽  
Barry Shane ◽  
John M. Scott ◽  
...  

Database ◽  
2019 ◽  
Vol 2019 ◽  
Author(s):  
Andrea Hatlen ◽  
Mohab Helmy ◽  
Antonio Marco

Abstract There is an increasing interest in the study of polymorphic variants at gene regulatory motifs, including microRNA target sites. Understanding the effects of selective forces at specific microRNA target sites, together with other factors like expression levels or evolutionary conservation, requires the joint study of multiple datasets. We have compiled information from multiple sources and compared it with predicted microRNA target sites to build a comprehensive database for the study of microRNA targets in human populations. PopTargs is a web-based tool that allows the easy extraction of multiple datasets and the joint analyses of them, including allele frequencies, ancestral status, population differentiation statistics and site conservation. The user can also compare the allele frequency spectrum between two groups of target sites and conveniently produce plots. The database can be easily expanded as new data becomes available and the raw database as well as code for creating new custom-made databases is available for downloading. We also describe a few illustrative examples.


PLoS ONE ◽  
2012 ◽  
Vol 7 (3) ◽  
pp. e33720 ◽  
Author(s):  
Tongjun Gu ◽  
Frank W. Buaas ◽  
Allen K. Simons ◽  
Cheryl L. Ackert-Bicknell ◽  
Robert E. Braun ◽  
...  

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