Phytoplankton in Antarctic lakes: biodiversity and main ecological features

Hydrobiologia ◽  
2020 ◽  
Vol 848 (1) ◽  
pp. 177-207 ◽  
Author(s):  
Irina Izaguirre ◽  
Luz Allende ◽  
M. Romina Schiaffino
2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Ranna Nakao ◽  
Kentaro Kasama ◽  
Bazartseren Boldbaatar ◽  
Yoshitoshi Ogura ◽  
Hiroki Kawabata ◽  
...  

Abstract Background Relapsing fever (RF) borreliae are arthropod-borne spirochetes and some of them cause human diseases, which are characterized by relapsing or recurring episodes of fever. Recently, it has been classified into two groups: soft tick-borne RF (STRF) borreliae and hard tick-borne RF (HTRF) borreliae. STRF borreliae include classical RF agents and HTRF borreliae, the latter of which include B. miyamotoi, a human pathogen recently identified in Eurasia and North America. Results In this study, we determined the genome sequences of 16 HTRF borreliae strains: 15 B. miyamotoi strains (9 from Hokkaido Island, Japan, 3 from Honshu Island, Japan, and 3 from Mongolia) and a Borrelia sp. tHM16w. Chromosomal gene synteny was highly conserved among the HTRF strains sequenced in this study, even though they were isolated from different geographic regions and different tick species. Phylogenetic analysis based on core gene sequences revealed that HTRF and STRF borreliae are clearly distinguishable, with each forming a monophyletic group in the RF borreliae lineage. Moreover, the evolutionary relationships of RF borreliae are consistent with the biological and ecological features of each RF borreliae sublineage and can explain the unique characteristics of Borrelia anserina. In addition, the pairwise genetic distances between HTRF borreliae strains were well correlated with those of vector species rather than with the geographical distances between strain isolation sites. This result suggests that the genetic diversification of HTRF borreliae is attributed to the speciation of vector ticks and that this relationship might be required for efficient transmission of HTRF borreliae within vector ticks. Conclusions The results of the present study, together with those from previous investigations, support the hypothesis that the common ancestor of borreliae was transmitted by hard-bodied ticks and that only STRF borreliae switched to using soft-bodied ticks as a vector, which was followed by the emergence of Borrelia recurrentis, lice-borne RF borreliae. Our study clarifies the phylogenetic relationships between RF borreliae, and the data obtained will contribute to a better understanding of the evolutionary history of RF borreliae.


2021 ◽  
Vol 167 ◽  
pp. 106268
Author(s):  
Mehdi Heydari ◽  
Sina Attar Roshan ◽  
Reza Omidipour ◽  
Manuel Esteban Lucas-Borja ◽  
Bernard Prévosto

Zootaxa ◽  
2015 ◽  
Vol 3957 (1) ◽  
pp. 85 ◽  
Author(s):  
MLADEN KUČINIĆ ◽  
ANA PREVIŠIĆ ◽  
WOLFRAM GRAF ◽  
IVA MIHOCI ◽  
MARIN ŠOUFEK ◽  
...  
Keyword(s):  

Phytotaxa ◽  
2017 ◽  
Vol 295 (1) ◽  
pp. 49
Author(s):  
ALUWANI A. TSHIILA ◽  
SAMSON B.M. CHIMPHANGO ◽  
JAN-ADRIAAN VILJOEN ◽  
A. MUTHAMA MUASYA

Unclear boundaries between species hinder identification in the field and in herbaria, especially in species groups that can only be distinguished on the basis of subtle morphological and ecological features. One such taxon is Ficinia indica, widespread in the Greater Cape Floristic Region, growing on deep sandy soils between sea level and 1000 m elevation. Within its range, several phylogenetically related and morphologically similar species co-occur or occupy distinct habitats. Studies in herbaria show species in the Ficinia indica complex to be largely misidentified based on the use of qualitative information. Here, we investigate whether the six taxa recognized, based on one or a few characters, are supported as distinct species based on multivariate analysis of macro-morphological data. Two of the taxa were mostly separated whereas the other four taxa overlapped in multivariate space, but all the taxa could be distinguished using a single or a combination of morphological and ecological characters. We uphold the four previously recognized taxa (Ficinia argyropus, F. elatior, F. indica, F. laevis) as species, describe two new species (F. arnoldii and F. montana), and provide a dichotomous key for their identification.


2021 ◽  
pp. 1-9
Author(s):  
Paulo E.A.S. Câmara ◽  
Láuren M.D. De Souza ◽  
Otávio Henrique Bezerra Pinto ◽  
Peter Convey ◽  
Eduardo T. Amorim ◽  
...  

Abstract Antarctic lakes have generally simple periphyton communities when compared with those of lower latitudes. To date, assessment of microbial diversity in Antarctica has relied heavily on traditional direct observation and cultivation methods. In this study, sterilized cotton baits were left submerged for two years in two lakes on King George Island and Deception Island, South Shetland Islands (Maritime Antarctic), followed by assessment of diversity by metabarcoding using high-throughput sequencing. DNA sequences of 44 taxa belonging to four kingdoms and seven phyla were found. Thirty-six taxa were detected in Hennequin Lake on King George Island and 20 taxa were detected in Soto Lake on Deception Island. However, no significant difference in species composition was detected between the two assemblages (Shannon index). Our data suggest that metabarcoding provides a suitable method for the assessment of periphyton biodiversity in oligotrophic Antarctic lakes.


2021 ◽  
Author(s):  
Alexandra Gogou ◽  
Constantine Parinos ◽  
Spyros Stavrakakis ◽  
Emmanouil Proestakis ◽  
Maria Kanakidou ◽  
...  

<p>Biotic and abiotic processes that form, alter, transport, and remineralize particulate organic carbon, silicon, calcium carbonate, and other minor and trace chemical species in the water column are central to the ocean’s ecological and biogeochemical functioning and of fundamental importance to the ocean carbon cycle. Sinking particulate matter is the major vehicle for exporting carbon from the sea surface to the deep sea. During its transit towards the sea floor, most particulate organic carbon (POC) is returned to inorganic form and redistributed in the water column. This redistribution determines the surface concentration of dissolved CO<sub>2</sub>, and hence the rate at which the ocean can absorb CO<sub>2</sub> from the atmosphere. The ability to predict quantitatively the depth profile of remineralization is therefore critical to deciphering the response of the global carbon cycle to natural and human-induced changes.</p><p>Aiming to investigate the significant biogeochemical and ecological features and provide new insights on the sources and cycles of sinking particulate matter, a mooring line of five sediment traps was deployed from 2006 to 2015 (with some gap periods) at 5 successive water column depths (700, 1200, 2000, 3200 and 4300 m) in the SE Ionian Sea, northeastern Mediterranean (‘NESTOR’ site). We have examined the long-term records of downward fluxes for Corg, N<sub>tot</sub>, δ<sup>13</sup>Corg and δ<sup>15</sup>N<sub>tot</sub>, along with the associated ballast minerals (opal, lithogenics and CaCO<sub>3</sub>), lipid biomarkers, Chl-a and PP rates, phytoplankton composition, nutrient dynamics and atmospheric deposition.  </p><p>The satellite-derived seasonal and interannual variability of phytoplankton metrics (biomass and phenology) and atmospheric deposition (meteorology and air masses origin) was examined for the period of the sediment trap experiment. Regarding the atmospheric deposition, synergistic opportunities using Earth Observation satellite lidar and radiometer systems are proposed (e.g. Cloud‐Aerosol Lidar with Orthogonal Polarization - CALIOP, Moderate Resolution Imaging Spectroradiometer - MODIS), aiming towards a four‐dimensional exploitation of atmospheric aerosol loading (e.g. Dust Optical Depth) in the study area.</p><p>Our main goals are to: i) develop a comprehensive knowledge of carbon fluxes and associated mineral ballast fluxes from the epipelagic to the mesopelagic and bathypelagic layers, ii) elucidate the mechanisms governing marine productivity and carbon export and sequestration to depth and iii) shed light on the impact of atmospheric forcing and deposition in respect to regional and large scale circulation patterns and climate variability and the prevailing oceanographic processes (internal variability).</p><p>Acknowledgments</p><p>We acknowledge support of this work by the Action ‘National Network on Climate Change and its Impacts – <strong>CLIMPACT</strong>’, funded by the Public Investment Program of Greece (GSRT, Ministry of Development and Investments).</p>


2014 ◽  
Vol 40 (2) ◽  
pp. 33-52 ◽  
Author(s):  
Dorota Kasowska ◽  
Anna Koszelnik-Leszek

Abstract The aim of this study was to determine the ecological characteristics of vascular plants colonizing serpentine mining waste dumps and quarries in Lower Silesia. The investigated flora was analyzed with regard to species composition, geographical-historical status, life forms, as well as selected ecological factors, such as light and trophic preferences, soil moisture and reaction, value of resistance to increased heavy metals content in the soil, seed dispersal modes and occurrence of mycorrhiza. There were 113 species of vascular plants, belonging to 28 families, found on seven sites in the study. The most numerous families were Asteraceae, Poaceae, Fabaceae and Caryophyllaceae. Only 13% of all plants recorded occurred on at least five of the study sites. The most numerous were species related to dry grassland communities, particularly of the Festuco-Brometea class, which included taxa endangered in the region of Lower Silesia: Avenula pratensis, Salvia pratensis, Festuca valesiaca. Apophytes dominated in the flora of the investigated communities. Hemicryptophytes were the most numerous group and therophytes were also abundant. The serpentine mining waste dumps and querries hosted heliophilous species which prefer mesic or dry habitats moderately poor in nutrients, featuring neutral soil reaction. On two study sites 30% of the flora composition consisted of species that tolerate an increased content of heavy metals in the soil. Anemochoric species were the most numerous with regard to types of seed dispersal. Species with an arbuscular type of mycorrhiza were definitely dominant in the flora of all the study sites, however, the number of nonmycorrhizal species was also relatively high. It was suggested that both the specific characteristics of the habitats from serpentine mining and the vegetation of adjacent areas had a major impact on the flora composition of the communities in the investigated sites.


2017 ◽  
Vol 17 (10) ◽  
pp. 605-619 ◽  
Author(s):  
Carlo C. Maley ◽  
Athena Aktipis ◽  
Trevor A. Graham ◽  
Andrea Sottoriva ◽  
Amy M. Boddy ◽  
...  
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