Rapid identification of Enterococcus faecalis by species-specific primers based on the genes involved in the Entner–Doudoroff pathway

2012 ◽  
Vol 39 (6) ◽  
pp. 7025-7030 ◽  
Author(s):  
Slavil Z. Peykov ◽  
Vanya D. Aleksandrova ◽  
Svetoslav G. Dimov
2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Cheng-Lung Tsai ◽  
I.-Hsuan Chu ◽  
Ming-Hsun Chou ◽  
Theeraphap Chareonviriyaphap ◽  
Ming-Yao Chiang ◽  
...  

Abstract The fall armyworm (FAW), Spodoptera frugiperda (Smith), is a major pest native to the Americas. A recent invasion of FAWs from Africa eastward to South Asia, the Indochina Peninsula, and mainland China has received much attention due to the considerable economic losses in agriculture. FAWs can rapidly colonise a new area, likely due to the wide range of host plants, good flying capability, and high egg production. Therefore, a convenient, quick, and accurate tool for FAW identification is urgently required to establish a FAW invasion management strategy. In this study, FAW-specific primers were designed to recognise FAWs on the basis of internal transcribed spacer 1 (ITS1). The results revealed the accurate FAW recognition of the three congeneric species and eight common corn lepidopteran pests, especially at their larval stage. Furthermore, species-specific primers have confirmed their efficacy by using 69 FAW specimens from Taiwan, Thailand, and the United States, with a 96% success rate, excluding 3 decayed specimens. By using the simple, reliable, and convenient FAW-specific primers, a pest management programme can be developed not only to reduce sequencing costs and experimental time from 2 days to 4 h, but eradicate the FAW as soon as it enters a new area.


2017 ◽  
Vol 65 (4) ◽  
pp. 461-474 ◽  
Author(s):  
Tulay Elal Mus ◽  
Figen Cetinkaya ◽  
Recep Cibik ◽  
Gul Ece Soyutemiz ◽  
Husniye Simsek ◽  
...  

In this study, the presence of genes responsible for the pathogenicity and antibiotic resistance profile of enterococci isolated from various foodstuffs of animal origin was investigated. The percentage prevalence of enterococci was 54.1% (203/375) and the average count was found to be 3.81 log cfu/ml-g. Species-specific primers revealed Enterococcus faecalis as the predominant species carrying one or more virulence-associated traits of efa, gelE, ace, esp and agg genetic markers. Only one E. faecium isolate (from milk) was positive for the esp gene. Regarding antibiotic resistance, the highest frequency of resistance was observed for tetracycline (21.7%), followed by quinupristin/dalfopristin (13.3%), ciprofloxacin (2.0%), penicillin (2.0%), linezolid (1.0%), ampicillin (1.0%), streptomycin (1.0%), and gentamicin (0.5%). Enterococcus faecalis showed a higher prevalence of antibiotic resistance than other enterococci. The percentage of multidrug resistance among the isolates was 3.4%. Twenty-nine E. faecalis isolates (26.6%) carrying one of the virulence-associated traits were at the same time resistant to at least one antibiotic. Our results show that foods of animal origin, including ready-to-eat products, may be reservoirs of antibiotic-resistant and potentially virulent enterococci.


2015 ◽  
Vol 193 ◽  
pp. 109-113 ◽  
Author(s):  
Petra Wrent ◽  
Eva-María Rivas ◽  
Elena Gil de Prado ◽  
José M. Peinado ◽  
María-Isabel de Silóniz

1996 ◽  
Vol 27 (1) ◽  
pp. 89-95 ◽  
Author(s):  
Jung-Hoon Yoon ◽  
Sung Taik Lee ◽  
Yong Kook Shin ◽  
Sam-Bong Kim ◽  
Hong-Joong Kim ◽  
...  

2003 ◽  
Vol 222 (1) ◽  
pp. 9-16 ◽  
Author(s):  
Chengxu Liu ◽  
Yuli Song ◽  
Maureen McTeague ◽  
Ann W. Vu ◽  
Hannah Wexler ◽  
...  

Botany ◽  
2021 ◽  
Author(s):  
Kanishka M. Senevirathna ◽  
Varina E. Crisfield ◽  
Theresa M. Burg ◽  
Robert A. Laird

Regional and global biodiversity may be underestimated due to the presence of cryptic species: species that are morphologically similar, but genetically distinct. Here we focus on two cryptic duckweed species, Lemna minor and L. turionifera, which have overlapping geographic ranges and are easily mistaken for one another. We developed species-specific primers based on DNA barcoding sequences to facilitate the rapid identification of these two monomorphic duckweeds, allowing us to investigate their presence and distribution in Alberta, Canada. While current reports indicate the presence of L. turionifera (and the morphologically distinct L. trisulca) in Alberta, our data indicate that L. minor is also present, predominantly in the southern part of the province. Thus, this paper (1) contributes to the accuracy and completeness of a regional flora, and (2) provides useful and flexible tools for the rapid molecular identification of cryptic Lemna species, species of wide interest in such diverse fields as biotechnology, toxicology, bioremediation, and ecology.


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