scholarly journals Metabolomic and elemental profiling of human tissue in kidney cancer

Metabolomics ◽  
2021 ◽  
Vol 17 (3) ◽  
Author(s):  
Joanna Nizioł ◽  
Valérie Copié ◽  
Brian P. Tripet ◽  
Leonardo B. Nogueira ◽  
Katiane O. P. C. Nogueira ◽  
...  
Keyword(s):  
Kidney Cancer ◽  
Chemical Elements ◽  
Kidney Tissue ◽  
Human Kidney ◽  
Emission Spectrometry ◽  
Resonance Spectroscopy ◽  
Ionization Mass ◽  
Clinical Prognosis ◽  
Elemental Profiling ◽  
Tissue Biomarkers

Abstract Introduction Kidney cancer is one of the most frequently diagnosed and the most lethal urinary cancer. Despite advances in treatment, no specific biomarker is currently in use to guide therapeutic interventions. Objectives Major aim of this work was to perform metabolomic and elemental profiling of human kidney cancer and normal tissue and to evaluate cancer biomarkers. Methods Metabolic and elemental profiling of tumor and adjacent normal human kidney tissue from 50 patients with kidney cancer was undertaken using three different analytical methods. Results Five potential tissue biomarkers of kidney cancer were identified and quantified using with high-resolution nuclear magnetic resonance spectroscopy. The contents of selected chemical elements in tissues was analyzed using inductively coupled plasma optical emission spectrometry. Eleven mass spectral features differentiating between kidney cancer and normal tissues were detected using silver-109 nanoparticle enhanced steel target laser desorption/ionization mass spectrometry. Conclusions Our results, derived from the combination of ICP-OES, LDI MS and 1H NMR methods, suggest that tissue biomarkers identified herein appeared to have great potential for use in clinical prognosis and/or diagnosis of kidney cancer.

scholarly journals Geochemical Risks of Diamond Mining in Siberia

2020 ◽  
Vol 5 (1) ◽  
pp. 4
Author(s):  
Yana Legostaeva ◽  
Anna Gololobova ◽  
Vladimir Popov
Keyword(s):  
Chemical Elements ◽  
Particle Size Analysis ◽  
Emission Spectrometry ◽  
Size Analysis ◽  
Spectrophotometric Methods ◽  
Industrial Sites ◽  
Diamond Mining ◽  
Mobile Forms ◽  
Geological Conditions ◽  
Processing Plants

Geochemical risk is caused by the release of hazardous chemicals to the earth surface. Primary diamond deposits are located in difficult mining and geological conditions. They represent natural geochemical anomalies associated with the mineral composition of rocks and groundwater, which contain a number of impurity elements with high toxic properties (Tl, Di, As, Cd, Hg), and increased concentrations of heavy metals (Cu, Zn, Pb, Ti, V and others). The paper presents the physical-geographical and mining-geological conditions of the diamondiferous region, where three large mining and processing divisions operate: Udachninsky, Aikhalsky and Nyurbinsky. pH, organic matter (humus), total nitrogen, and physical clay were identified in the study samples, by using potentiometric, photoelectric colorimetric, spectrophotometric methods, and pipette method for particle size analysis. Gross and mobile forms of trace elements were determined by atomic absorption and emission spectrometry. The groups of elements were identified that determined the natural and man-made anomalies. The accumulation of Cr, Ni, and Co determines the influence of kimberlite magmatism in general. Cu, Sr, and Li are accumulated in the soils of the Daldyn-Alakit diamond-bearing region. Increased concentrations of Mn and Cu are typical in the soils of the Sredne-Markhinsky diamond-bearing region. An assessment of the ecological and geochemical state of the study areas was carried out according to the indicator of total pollution (Zc), which is the sum of the excess of the concentration coefficients of chemical elements accumulating in anomalies. Areas of pollution and zones of the greatest risk are localized, which occupy up to 75% of the total area of industrial sites. They confined to quarry-dump complexes and to areas of impact of tailing dumps of processing plants.

scholarly journals Treatment response after 6 and 26 weeks is related to baseline glutamate and GABA levels in antipsychotic-naïve patients with psychosis

2019 ◽  
Vol 50 (13) ◽  
pp. 2182-2193 ◽  
Author(s):  
Kirsten B. Bojesen ◽  
Bjørn H. Ebdrup ◽  
Kasper Jessen ◽  
Anne Sigvard ◽  
Karen Tangmose ◽  
...  
Keyword(s):  
Psychotic Disorders ◽  
Poor Response ◽  
First Episode Psychosis ◽  
Anterior Cingulate ◽  
First Episode ◽  
Antipsychotic Treatment ◽  
Resonance Spectroscopy ◽  
Reference Levels ◽  
Clinical Prognosis ◽  
Episode Psychosis

AbstractBackgroundPoor response to dopaminergic antipsychotics constitutes a major challenge in the treatment of psychotic disorders and markers for non-response during first-episode are warranted. Previous studies have found increased levels of glutamate and γ-aminobutyric acid (GABA) in non-responding first-episode patients compared to responders, but it is unknown if non-responders can be identified using reference levels from healthy controls (HCs).MethodsThirty-nine antipsychotic-naïve patients with first-episode psychosis and 36 matched HCs underwent repeated assessments with the Positive and Negative Syndrome Scale and 3T magnetic resonance spectroscopy. Glutamate scaled to total creatine (/Cr) was measured in the anterior cingulate cortex (ACC) and left thalamus, and levels of GABA/Cr were measured in ACC. After 6 weeks, we re-examined 32 patients on aripiprazole monotherapy and 35 HCs, and after 26 weeks we re-examined 30 patients on naturalistic antipsychotic treatment and 32 HCs. The Andreasen criteria defined non-response.ResultsBefore treatment, thalamic glutamate/Cr was higher in the whole group of patients but levels normalized after treatment. ACC levels of glutamate/Cr and GABA/Cr were lower at all assessments and unaffected by treatment. When compared with HCs, non-responders at week 6 (19 patients) and week 26 (16 patients) had higher baseline glutamate/Cr in the thalamus. Moreover, non-responders at 26 weeks had lower baseline GABA/Cr in ACC. Baseline levels in responders and HCs did not differ.ConclusionGlutamatergic and GABAergic abnormalities in antipsychotic-naïve patients appear driven by non-responders to antipsychotic treatment. If replicated, normative reference levels for glutamate and GABA may aid estimation of clinical prognosis in first-episode psychosis patients.

CORTICOSTEROIDS IN HUMAN KIDNEY TISSUE

1969 ◽  
Vol 61 (1_Suppl) ◽  
pp. S66
Author(s):  
A. T. A. Fazekas ◽  
I. Gy. Fazekas
Keyword(s):  
Kidney Tissue ◽  
Human Kidney

scholarly journals Natalenamides A–C, Cyclic Tripeptides from the Termite-Associated Actinomadura sp. RB99

Molecules ◽  
2018 ◽  
Vol 23 (11) ◽  
pp. 3003 ◽  
Author(s):  
Seoung Rak Lee ◽  
Dahae Lee ◽  
Jae Sik Yu ◽  
René Benndorf ◽  
Sullim Lee ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Cyclic Peptides ◽  
Culture Broth ◽  
Resonance Spectroscopy ◽  
Ionization Mass ◽  
Inhibitory Effects ◽  
Associated Bacteria ◽  
Chemical Structures ◽  
New Compounds ◽  
Powerful Strategy

In recent years, investigations into the biochemistry of insect-associated bacteria have increased. When combined with analytical dereplication processes, these studies provide a powerful strategy to identify structurally and/or biologically novel compounds. Non-ribosomally synthesized cyclic peptides have a broad bioactivity spectrum with high medicinal potential. Here, we report the discovery of three new cyclic tripeptides: natalenamides A–C (compounds 1–3). These compounds were identified from the culture broth of the fungus-growing termite-associated Actinomadura sp. RB99 using a liquid chromatography (LC)/ultraviolet (UV)/mass spectrometry (MS)-based dereplication method. Chemical structures of the new compounds (1–3) were established by analysis of comprehensive spectroscopic methods, including one-dimensional (1H and 13C) and two-dimensional (1H-1H-COSY, HSQC, HMBC) nuclear magnetic resonance spectroscopy (NMR), together with high-resolution electrospray ionization mass spectrometry (HR-ESIMS) data. The absolute configurations of the new compounds were elucidated using Marfey’s analysis. Through several bioactivity tests for the tripeptides, we found that compound 3 exhibited significant inhibitory effects on 3-isobutyl-1-methylxanthine (IBMX)-induced melanin production. The effect of compound 3 was similar to that of kojic acid, a compound extensively used as a cosmetic material with a skin-whitening effect.

scholarly journals Autofluorescence microscopy as a label-free tool for renal histology and glomerular segmentation

2021 ◽  
Author(s):  
Nathan Heath Patterson ◽  
Elizabeth K Neumann ◽  
Kavya Sharman ◽  
Jamie L Allen ◽  
Raymond C Harris ◽  
...  
Keyword(s):  
Recognition Performance ◽  
Periodic Acid ◽  
Kidney Tissue ◽  
Human Kidney ◽  
True Positive Rate ◽  
Label Free ◽  
Periodic Acid Schiff ◽  
Renal Histology ◽  
Fresh Frozen ◽  
Histological Staining

Functional tissue units (FTUs) composed of multiple cells like the glomerulus in the kidney nephron play important roles in health and disease. Histological staining is often used for annotation or segmentation of FTUs, but chemical stains can introduce artefacts through experimental factors that influence analysis. Secondly, many molecular -omics techniques are incompatible with common histological stains. To enable FTU segmentation and annotation in human kidney without the need for histological staining, we detail here the use of widefield autofluorescence (AF) microscopy as a simple, label-free modality that provides detailed renal morphology comparable to periodic acid-Schiff (PAS) stained tissue in both formalin-fixed paraffin-embedded (FFPE) and fresh frozen samples and with no tissue processing beyond sectioning. We demonstrate automated deep learning-based glomerular unit recognition and segmentation on PAS and AF images of the same tissue section from 9 fresh frozen samples and 9 FFPE samples. All training comparisons were carried out using registered AF microscopy and PAS stained whole slide images originating from the same section, and the recognition models were built with the exact same training and test examples. Measures of recognition performance, such as the Dice-Sorensen coefficient, the true positive rate, and the positive predictive value differed less than 2% between standard PAS and AF microscopy for both preservation methods. These results demonstrate that AF is a potentially powerful tool to study human kidney tissue, that it can serve as a label-free source for automated and manual annotation of tissue structures.

scholarly journals DISTRIBUTION OF CHEMICAL ELEMENTS IN SOIL FROM CRN DRIM RIVER BASIN, REPUBLIC OF MACEDONIA

2019 ◽  
Vol 40 (1) ◽  
pp. 73 ◽  
Author(s):  
Trajče Stafilov ◽  
Robert Šajn ◽  
Ivana Mickovska
Keyword(s):  
River Basin ◽  
Inductively Coupled Plasma ◽  
Chemical Elements ◽  
Soil Samples ◽  
Emission Spectrometry ◽  
Natural Occurrence ◽  
Plasma Atomic Emission Spectrometry ◽  
Distribution Maps ◽  
Republic Of Macedonia ◽  
Anthropogenic Element

The aim of this study was to investigate the distribution of chemical elements in topsoil and subsoil, focusing on the identification of natural and anthropogenic element sources in the area of the Crn Drim River Basin, Republic of Macedonia. For that purpose, by using sampling network of 5 × 5 km, 124 soil samples from 62 locations (topsoil and bottom soil) were collected. In total 60 elements were analysed, from which 18 elements (Ag, Al, B, Ba, Ca, Cr, Cu, Fe, K, Li, Mg, Mn, Na, Ni, P, Pb, V и Zn) were analysed by inductively coupled plasma - atomic emission spectrometry (ICP-AES) and an additional 42 elements were analysed by ICP - mass spectrometry (ICP-MS). Multivariate statistical analysis was applied to the obtained data. Factor analysis applied to the ICP-AES results produced four geogenic fac-tors: F1 (Ba and K); F2 (Ag, Cd, Cu, Ni, Pb and Zn), F3 (Cr, Fe, Na, Ni and V) and F4 (Al, Ca, Mg and Mn). Data ob-tained from the distribution maps and data analysis on soil samples, indicate the natural occurrence of the analysed ele-ments as well as low concentrations of heavy metals in the studied area.

scholarly journals Secondary Metabolites of the Endophytic Fungus Chaetomium globosum Isolated From Coptis chinensis

2021 ◽  
Vol 16 (9) ◽  
pp. 1934578X2110445
Author(s):  
Jia-Cheng Ji ◽  
Pan-Pan Wei ◽  
Xiao-Yang Han ◽  
Zheng-Hui Li ◽  
Hong-Lian Ai ◽  
...  
Keyword(s):  
Endophytic Fungus ◽  
Early Childhood Development ◽  
Childhood Development ◽  
Chaetomium Globosum ◽  
Resonance Spectroscopy ◽  
Ionization Mass ◽  
Two Dimensional ◽  
Coptis Chinensis ◽  
Relative Configuration ◽  
One Dimensional

A new steroid, chaetglotone (1), together with 3 known compounds (2-4), were isolated from Chaetomium globosum, which is an endophytic fungus isolated from the root of Coptis chinensis Franch . The new compound was characterized by one-dimensional and two-dimensional nuclear magnetic resonance spectroscopy and high-resolution electrospray ionization mass spectrometer. The relative configuration and absolute configuration of 1 were further determined via the DP4 + and Early Childhood Development protocols, separately.

scholarly journals The Globoseries Glycosphingolipid Sialosyl Galactosyl Globoside Is Found in Urinary Tract Tissues and Is a Preferred Binding Receptor In Vitro for Uropathogenic Escherichia coli Expressing pap-Encoded Adhesins

1998 ◽  
Vol 66 (8) ◽  
pp. 3856-3861 ◽  
Author(s):  
A. E. Stapleton ◽  
M. R. Stroud ◽  
S. I. Hakomori ◽  
W. E. Stamm
Keyword(s):  
Escherichia Coli ◽  
Urinary Tract ◽  
Kidney Tissue ◽  
Human Kidney ◽  
Blood Group Antigens ◽  
E Coli ◽  
Vaginal Epithelial Cells ◽  
History Of ◽  
Tract Infections

ABSTRACT Women with a history of recurrent Escherichia coliurinary tract infections (UTIs) are significantly more likely to be nonsecretors of blood group antigens than are women without such a history, and vaginal epithelial cells (VEC) from women who are nonsecretors show enhanced adherence of uropathogenic E. coli isolates compared with cells from secretors. We previously extracted glycosphingolipids (GSLs) from native VEC and determined that nonsecretors (but not secretors) selectively express two extended globoseries GSLs, sialosyl galactosyl globoside (SGG) and disialosyl galactosyl globoside (DSGG), which specifically bound uropathogenicE. coli R45 expressing a P adhesin. In this study, we demonstrated, by purifying the compounds from this source, that SGG and DSGG are expressed in human kidney tissue. We also demonstrated that SGG and DSGG isolated from human kidneys bind uropathogenic E. coli isolates expressing each of the three classes ofpap-encoded adhesins, including cloned isolates expressing PapG from J96, PrsG from J96, and PapG from IA2, and the wild-type isolates IA2 and R45. We metabolically 35S labeled these five E. coli isolates and measured their relative binding affinities to serial dilutions of SGG and DSGG as well as to globotriaosylceramide (Gb3) and globotetraosylceramide (Gb4), two other globoseries GSLs present in urogenital tissues. Each of the five E. coli isolates bound to SGG with the highest apparent avidity compared with their binding to DSGG, Gb3, and Gb4, and each isolate had a unique pattern of GSL binding affinity. These studies further suggest that SGG likely plays an important role in the pathogenesis of UTI and that its presence may account for the increased binding of E. colito uroepithelial cells from nonsecretors and for the increased susceptibility of nonsecretors to recurrent UTI.

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