First report of Orobanche cernua parasitism on Allium sativum in Banda district of Uttar Pradesh, India

Mango wilt has been a serious constraint in mango (Mangifera indica L.) production in several countries including India (Shukla et al. 2018). Although, several fungal pathogens have been reported associated with the disease, species of Ceratocystis, Verticillium and Lasiodiplodia have been found predominantly responsible for the wilt (Shukla et al. 2018). A twenty-seven-year old mango tree cv. Dashehari at Rehmankhera, Lucknow, Uttar Pradesh, India suffered sudden wilt (Fig. 1A) during February 2020. Though, symptoms were similar to Ceratocystis wilt, no gummosis was observed on trunk or branches which occurred in the majority of Ceratocystis fimbriata infected trees. The infected roots of the wilted tree exhibited dark brown to black discoloration in woody portions (Fig. 1B). Severely affected roots were completely rotten. Similar symptoms of root infection were observed in an additional 16 declining trees within an orchard of 120 trees total (Fig. 2). The infected hard wood samples from live roots of 16 declining and one wilted trees were utilized for isolation by placing stem tissue of discolored and normal colored tissue on surface sterilized fresh carrot discs placed in a moisture chamber (Fig. 1C) for 10 days. Out of 17 tree samples, isolates of Berkeleyomyces basicola (Berk. & Broome) W.J. Nel, Z.W. de Beer, T.A. Duong, M.J. Wingf. (Nel et al. 2018) obtained from 1 wilted and 9 declining trees were transferred to and maintained in pure culture on potato dextrose agar. Isolates were grown for 7 to 10 days at 23±1 °C temperature in the dark. The isolates were characterized by a greyish black compact mycelial colony (Fig. 1D). Two types of spores, endoconidia (phialospores) and chlamydospores (aleuriospores or amylospores) were observed under microscope. The endoconidia were hyaline, cylindrical in shape with 10 to 42 × 3 to 6 μm (n=50) in size (Fig. 1E). Chains of dark colored chlamydospores (3 to 7 spores in chain) of 24 to 52 × 10 to 12 μm (n=50) size were apparent (Fig. 1E&F). Molecular identification of the fungus isolated from the wilted tree was established by amplifying the ITS1-5.8 rDNA-ITS2 region of fungal genomic DNA and the set of ITS primers (ITS 1 and ITS4) (White et al. 1990) followed by sequencing. The sequence has been submitted to the NCBI database vide accession number MT786402. The present isolate (MT786402) shared >99 percent nucleotide similarity with other B. basicola isolates. The phylogenetic tree was constructed using the ITS1-5.8 rDNA-ITS2 sequences of other B. basicola isolates and other Thielaviopsis spp., C. fimbriata, Chalaropsis thielavioides through neighbor joining method using MEGAX software (Fig. 3) (Kumar et al. 2018). The present isolate formed a distinct cluster along with other B. basicola isolates in a separate clade. Koch's postulate was performed under a transparent polycarbonate sheet roof net house at 14.4 and 42.2 °C minimum and maximum temperatures, respectively. A 100 ml macerated culture suspension consisting of 1000 chlamydospores and endoconidia per ml suspension was inoculated in the rhizosphere of mango seedlings planted in sterilized soil filled in earthen pots, using ten replicates for inoculated and uninoculated plants. Symptoms of necrotic root tissue were observed 90 days after inoculation and were consistent with those observed in the field. The same fungus was re-isolated from infected roots and identity was confirmed. All control plants remained symptom-free and B. basicola was not isolated from the roots. Thus, we conclude that B. basicola is capable of causing root rot disease of mango. To the best of our knowledge this is the first report of B. basicola causing mango root rot and decline across the globe, hitherto unreported. The extent of the root necrosis symptoms associated with mature mango trees demonstrates the potential virulence of B. basicola, although its pathogenicity risk on healthy mature trees is still unknown. However, the possibility of severe losses to the mango industry in world number one mango producer country, India cannot be ruled out, if found widespread.

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First report on clover proliferation phytoplasma related strain associated with Matthiola incana floral virescence in Uttar Pradesh, India

Plant Disease ◽

10.1094/pdis-10-20-2188-pdn ◽

2020 ◽

Author(s):

Priyam Panda ◽

Jay Kumar Yadav ◽

Sushil Kumar Singh ◽

Amrita Nigam ◽

Govind P Rao

Keyword(s):

Uttar Pradesh ◽

Rflp Analysis ◽

Related Strain ◽

New Host ◽

First Report ◽

Matthiola Incana ◽

Ctab Method ◽

Pcr Assays ◽

Nested Pcr Assays ◽

Virtual Rflp

Matthiola incana R. Br. (Fam: Brassicaceae) is an ornamental, commonly known as hoary stock has an extremely fragrant flowers, which blooms in dense clusters in a large variety of colors. During a survey of flower nurseries in March 2019 at Indian Institute of Sugarcane Research campus, Lucknow, floral virescence (MiV) symptoms (Fig. 1 A, B) were observed in M. incana pots with an incidence of over 40%. Leaf yellows symptoms were also observed on a weed Acalypha indica (AiLY) in Matthiola nursery (Fig. 1 C). Nested PCR assays were carried out to detect and identify the possible association of phytoplasmas with MiV and AiLY symptoms. Three each of symptomatic MiV and AiLY samples and two non-symptomatic samples were collected and processed for DNA extraction from the leaf midrib by CTAB method. Hishimonus phycitis (HP) (Hemiptera: Cicadellidae) leafhopper feeding on MiV symptomatic plants was also collected and DNA was extracted. The DNA of 8 symptomatic and 4 non-symptomatic plants and from the 10 leafhopper was used as a template for PCR assays. Phytoplasma specific 16Sr RNA gene specific primers (P1/P7 and 3Far/3Rev; Schneider et al. 1995; Manimekalai et al. 2010) and multilocus genes’ specific primer pairs for secA (SecAfor1/SecArev3;SecAfo5r/SecARev2; Bekele et al. 2011), secY (SecYF1(VI)/SecYR1(VI);SecYF2(VI)/SecYR1(VI); Lee et al. 2010) and rp genes (rpFIC/rp(I)R1A; rp(VI)F2/ rp(VI)R2; Martini et al. 2007) were employed as previously described. Amplified products of ~1.3kb, ~600bp, ~1.7kb and ~1.0kb of 16S rRNA, secA, secY and rp genes of phytoplasma were consistently amplified in all the MiV and AiLY samples and in the HP leafhopper. No amplifications were achieved in any of the asymptomatic plant samples. Amplified products of all the four genes of MiV, AiLY and HP isolates were purified, sequenced and submitted in GenBank. Sequence comparison and phylogeny analysis of the sequences of the four genes of MiV, AiLY and HP isolates revealed 99% - 100% sequence identity and clustering with clover proliferation phytoplasma related strains (16SrVI group)(Fig.2 A,B,C and D). The virtual RFLP analysis of 17 restriction endonucleases corresponding to the 16S rDNA sequence of MiV, AiLY and HP phytoplasma strains by pDraw program, assigned them into a novel phytoplasma subgroup strain under 16SrVI group, since its HpaII restriction profile was different to earlier classified 16SrVI subgroups but was very close to16SrVI-E subgroup (GenBank acc. no. AY270156) (Fig 3). Earlier, peanut witches’ broom (16SrII-A) phytoplasma was identified associated with M. incana from Italy (Davino et al. 2007). However, the association of clover proliferation phytoplasma (16SrVI) related strain associated with virescence symptom of M. incana is the first report in world. The weed (A. indica) and HP leafhopper were also reported as additional hosts of 16SrVI subgroup related new strain in India, which needs further investigation. The report of a new host and new subgroup of clover proliferation phytoplasma related strain in India is having an epidemiological significance and warrants attention.

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First report of Aspergillus awamori as a fungal pathogen of garlic (Allium sativum L.)

Crop Protection ◽

10.1016/j.cropro.2016.03.019 ◽

2016 ◽

Vol 85 ◽

pp. 65-70 ◽

Cited By ~ 6

Author(s):

Ji Yeon Oh ◽

Mohamed Mannaa ◽

Gyung Deok Han ◽

Se-Chul Chun ◽

Ki Deok Kim

Keyword(s):

Fungal Pathogen ◽

Allium Sativum ◽

Aspergillus Awamori ◽

First Report

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First report of leaf spot disease caused by Stemphylium eturmiunum on garlic in Korea.

Plant Disease ◽

10.1094/pdis-03-21-0674-pdn ◽

2021 ◽

Author(s):

Walftor Dumin ◽

Mi-Jeong Park ◽

You-Kyoung Han ◽

Yeong-Seok Bae ◽

Jong-Han Park ◽

...

Keyword(s):

Leaf Spot ◽

Allium Sativum ◽

Morphological Characteristics ◽

Fungal Isolate ◽

Causal Agent ◽

Leaf Spot Disease ◽

Pathogenicity Test ◽

First Report ◽

Spot Disease ◽

Intact Leaves

Garlic (Allium sativum L. cv.namdo) is one of the most popular vegetables grown in Korea due to its high demand from the food industry. However, garlic is susceptible to a wide range of pest infestations and diseases that cause a significant decrease in garlic production, locally and globally (Schwartz and Mohan 2008). In early 2019, the occurrence of leaf blight disease was found spreading in garlic cultivation areas around Jeonnam (34.9671107, 126.4531825) province, Korea. Disease occurrence was estimated to affect 20% of the garlic plants and resulted in up to a 3-5% decrease in its total production. At the early stage of infection, disease symptoms were manifested as small, white-greyish spots with the occurrence of apical necrosis on garlic leaves. This necrosis was observed to enlarge, producing a water-soaked lesion before turning into a black-violet due to the formation of conidia. As the disease progressed, the infected leaves wilted, and the whole garlic plants eventually died. To identify the causal agent, symptomatic tissues (brown dried water-soak lesion) were excised, surface sterilized with 1% NaOCl and placed on the Potato Dextrose Agar (PDA) followed by incubation at 25°C in the dark for 5 days. Among ten fungal isolates obtained, four were selected for further analyses. On PDA, fungal colonies were initially greyish white in colour but gradually turned to yellowish-brown after 15 days due to the formation of yellow pigments. Conidia were muriform, brown in colour, oblong (almost round) with an average size of 18 – 22 × 16 – 20 μm (n = 50) and possessed 6 - 8 transverse septa. Fungal mycelia were branched, septate, and with smooth-walled hyphae. Morphological characteristics described above were consistent with the morphology of Stemphylium eturmiunum as reported by Simmons (Simmons, 2001). For molecular identification, molecular markers i.e. internal transcribed spacer (ITS) and calmodulin (cmdA) genes from the selected isolates were amplified and sequenced (White et al., 1990; Carbone and Kohn 1999). Alignment analysis shows that ITS and cmdA genes sequence is 100% identical among the four selected isolates. Therefore, representative isolate i.e. NIHHS 19-142 (KCTC56750) was selected for further analysis. BLASTN analysis showed that ITS (MW800165) and cmdA (LC601938) sequences of the representative isolates were 100% identical (523/523 bp and 410/410 bp) to the reference genes in Stemphylium eturmiunum isolated from Allium sativum in India (KU850545, KU850835) respectively (Woudenberg et al. 2017). Phylogenetic analysis of the concatenated sequence of ITS and cmdA genes confirmed NIHHS 19-142 isolates is Stemphylium eturmiunum. Pathogenicity test was performed using fungal isolate representative, NIHHS 19-142. Conidia suspension (1 × 106 conidia/µL) of the fungal isolate was inoculated on intact garlic leaves (two leaves from ten different individual plants were inoculated) and bulbs (ten bulbs were used) respectively. Inoculation on intact leaves was performed at NIHHS trial farm whereas inoculated bulbs were kept in the closed container to maintain humidity above 90% and incubated in the incubator chamber at 25°C. Result show that the formation of water-soaked symptoms at the inoculated site was observed at 14 dpi on intact leaves whereas 11 dpi on bulbs. As a control, conidia suspension was replaced with sterile water and the result shows no symptoms were observed on the control leaves and bulbs respectively. Re-identification of fungal colonies from symptomatic leaf and bulb was attempted. Result showed that the morphological characteristics and molecular marker sequences of the three colonies selected were identical to the original isolates thus fulfilled Koch’s postulates. Early identification of Stemphylium eturmiunum as a causal agent to leaf spot disease is crucial information to employ effective disease management strategies or agrochemical applications to control disease outbreaks in the field. Although Stemphylium eturmiunum has been reported to cause leaf spot of garlic disease in China, France and India (Woudenberg et al. 2017), to our knowledge, this is the first report of causing leaf spot disease on garlic in Korea.

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First report of Dicranocentroides indica (Handschin, 1929) (Collembola: Paronellidae) from Odisha, India

Journal of Threatened Taxa ◽

10.11609/jott.5329.11.15.15072-15073 ◽

2019 ◽

Vol 11 (15) ◽

pp. 15072-15073

Author(s):

Ashirwad Tripathy

Keyword(s):

Andhra Pradesh ◽

Soil Health ◽

Uttar Pradesh ◽

Arunachal Pradesh ◽

First Report

Collembola are soil builders and they decide the soil health. There are about 9023 species of collembola decribed worldwide and 342 species of 113 genera of 20 families are present in India. Here, the first report of the species Dicranocentroides indica Handschin, 1929 and its description was made from Odisha, whereas its earlier distribution was from Assam, Meghalaya, Manipur, Mizorum, Nagaland, Arunachal Pradesh, Sikkim, Uttar Pradesh, Andhra Pradesh, Chattishgarh.

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First Report of Fusarium proliferatum Causing Rot of Garlic Bulbs (Allium sativum) in India

Plant Disease ◽

10.1094/pdis-08-11-0649 ◽

2012 ◽

Vol 96 (2) ◽

pp. 290-290 ◽

Cited By ~ 9

Author(s):

N. Ravi Sankar ◽

Gundala Prasad Babu

Keyword(s):

Sodium Hypochlorite ◽

Allium Sativum ◽

Morphological Characteristics ◽

Aerial Mycelium ◽

Its Region ◽

Fusarium Proliferatum ◽

Distilled Water ◽

Sequence Comparisons ◽

First Report ◽

Plant Pathol

In September 2009, diseased garlic bulbs (Allium sativum L. cv. Yamuna Safed) were received from producers and exporters in Hyderabad, Andra Pradesh, India. From 2009 to 2010, similar symptoms were observed on stored garlic bulbs (cvs. Yamuna Safed and Agrifound White) in Chittoor, Kadapa, and Hyderabad districts. In some locations, approximately 60% of the garlic bulbs were affected. At first, infected bulbs showed water-soaked, brown spots and then the disease progressed as small, slightly depressed, tan lesions. A total of 120 diseased samples were collected from all localities. Infected tissues were surface sterilized in 1% sodium hypochlorite for 2 min, rinsed three times in sterile distilled water, plated on potato dextrose agar (PDA), and incubated at 25°C for 7 days. Resultant fungal colonies were fast growing with white aerial mycelium and violet to dark pigments. Hyphae were septate and hyaline. Conidiophores were short, simple, or branched. Microconidia were abundant, single celled, oval or club shaped, measuring 4.5 to 10.5 × 1.3 to 2.5 μm, and borne in chains from both mono-and polyphialides. Macroconidia were not produced. On the basis of morphological characteristics, the pathogen was identified as Fusarium proliferatum (Matsushima) Nirenberg (2). Identification was confirmed by amplification of the internal transcribed spacer (ITS) region. Genomic DNA was extracted from pure cultures of an isolate, and the ITS region was amplified using the ITS4/5 primer pair. PCR amplicons of approximately 574 bp were obtained from isolates, and sequence comparisons with GenBank showed 99% similarity with F. proliferatum (Accession No. FN868470.1). Sequence from this study was submitted to GenBank nucleotide database (Accession No. AB646795). Pathogenicity tests were conducted with three isolates of the fungus following the method of Dugan et al. (1). Each assay with an isolate consisted of 10 garlic cloves disinfected in 1% sodium hypochlorite for 45 s, rinsed with sterile distilled water, and injured to a depth of 4 mm with a sterile 1-mm-diameter probe. The wounds were filled with PDA colonized by the appropriate isolate from a 5-day-old culture. Ten cloves for each tested isolate received sterile PDA as a control. The cloves were incubated at 25°C for 5 weeks; tests were repeated once. After 17 days, rot symptoms similar to the original symptoms developed on all inoculated cloves and F. proliferatum was consistently reisolated from symptomatic tissue, fulfilling Koch's postulates. No fungi were recovered from control cloves. F. proliferatum has been reported on garlic in the northwestern United States (1), Serbia (4), and Spain (3). To our knowledge, this is the first report of F. proliferatum causing rot disease on garlic bulbs in India. References: (1) F. M. Dugan et al. Plant Pathol. 52:426, 2003. (2) J. F. Leslie and B. A. Summerell. The Fusarium Laboratory Manual. Blackwell Publishing, Oxford, UK, 2006. (3) D. Palmero et al. Plant Dis. 94:277, 2010. (4) S. Stankovic et al. Eur. J. Plant Pathol. 48:165, 2007.

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Redescription of leaf miners (Agromyzidae) infesting pods of legumes from India and Nepal

Our Nature ◽

10.3126/on.v10i1.7794 ◽

2013 ◽

Vol 10 (1) ◽

pp. 258-268

Author(s):

Ram Bahadur Thapa

Keyword(s):

New Species ◽

Cajanus Cajan ◽

Host Plants ◽

Uttar Pradesh ◽

Large Series ◽

Zoological Nomenclature ◽

Leaf Miners ◽

First Report ◽

Northern India ◽

Wild Host

Two species of pod flies under the genus Melanagromyza Hendel were reared, redescribed and illustrated from India. These were Melanagromyza albisquama (Malloch) and Melanogromyza obtusa (Malloch). Melanagromyza albisquama (Malloch) was reared from seeds of Alysicarpus moniliform Dc., Alysicarpus rugosus Dc. (Linn.), Alysicarpus vaginalis (Linn.) Dc. and Desmodium gangeticum Dc. from Uttar Pradesh India. This is a first report from India. The second species reared, re-described and illustrated from India was Melanagromyza obtusa (Malloch) from pods of Cajanus cajan (Linn.) Millsp. and Flemingia congesta Roxb. Melanagromyza obtusa (Malloch) was also reared from pods of Cajanus cajan (Linn.) Millsp. from Biratnagar, eastern Nepal (Thapa, 2000) and this is the first report from Nepal. Variation within these species, were also described and illustrated, with genitalia preparation. The biology of albisquama (Malloch) has been clarified from India (Thapa, 1991). Descriptions and genitalia illustration broadly agreed with the illustrations figured by (Spencer, 1963, 1977). Variation within the species was also studied by the author (Thapa, 1991). Sehgal (1987) had also collected and reared large series of this species from several localities in Terai and Kumaon and Garhwal regions of Northern India on its widely cultivated host plants, Cajanus cajan (Linn.) Millsp. and an alternate wild host Flemingia congesta Roxb. Spencer (1973, 1977) has listed Cajanus indicus Spreng, Flemingia sp. and Phaseolus radiatus Linn. as leguminous hosts of this species. Six new species of other stem flies infesting mostly legumes were also discovered under the genus Melanagromyza (stem flies) from Pantnagar, northen India. These were: M . pathaki new; M .glycini new species; M . denticulata Willd. new species; M . pisiphaga new species; M . sehgali new species ; M .vicivora new species.New names have been proposed to them as per International rules of Zoological Nomenclature. Thapa (2012) has redescribed M. sojae (Zehntner) under Melanagromyza Hendel from India and Nepal.DOI: http://dx.doi.org/10.3126/on.v10i1.7794

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Effect of Two Allexivirus Isolates on Garlic Yield

Plant Disease ◽

10.1094/pd-90-0898 ◽

2006 ◽

Vol 90 (7) ◽

pp. 898-904 ◽

Cited By ~ 14

Author(s):

E. E. Cafrune ◽

M. C. Perotto ◽

V. C. Conci

Keyword(s):

Allium Sativum ◽

Negative Control ◽

Yield Losses ◽

Assay Condition ◽

First Report ◽

Virus Complex ◽

Significant Yield ◽

Virus C ◽

Garlic Virus ◽

Assay Conditions

Garlic (Allium sativum) is infected by numerous viruses forming a viral-complex, which is widely distributed in the garlic production regions of Argentina. This work is the first report of the effect of two Allexivirus isolates, Garlic virus A (GarV-A) and Garlic virus C (GarV-C), on garlic yield. Garlic cvs. Morado-INTA and Blanco-IFFIVE were used in the experiments, and four treatments were evaluated: plants inoculated with GarV-A only, GarV-C only, virus-free plants (negative control), and plants infected with the virus-complex. Assays were performed in anti-aphid cages and in the field during 2002 and 2003. GarV-A caused significant reductions in bulb weight (14 to 32%) and diameter (6 to 11%) compared with the negative control in the two cultivars under both assay conditions. GarV-C caused less damage than GarV-A (15% in weight and 5% in diameter) with respect to the negative control in cv. Blanco-IFFIVE, and did not produce significant yield losses in cv. Morado-INTA in either year or under either assay condition.

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