scholarly journals Molecular and morphological revision of small Myotinae from the Himalayas shed new light on the poorly known genus Submyotodon (Chiroptera: Vespertilionidae)

2021 ◽  
Author(s):  
Manuel Ruedi ◽  
Uttam Saikia ◽  
Adora Thabah ◽  
Tamás Görföl ◽  
Sanjan Thapa ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Systematic Position ◽  
Himalayan Region ◽  
Constituent Species ◽  
Integrative Studies ◽  
New Material ◽  
Distinct Lineage ◽  
The Common ◽  
Public Repositories ◽  
Lower Molar

AbstractThe systematics status of the constituent species of the M. mystacinus morphogroup in the Himalayan region has long been marred by uncertainty. Lack of integrative studies combining morphological and genetic data from specimens recently collected in this region has hampered our understanding of cryptic variations in this complex taxonomic group. To address this issue, new material from the Himalayan region of India and Nepal was obtained and vouchered specimens in the holdings of various museums were also re-examined. As comparative material, a large series of relevant specimens from South and Southeast Asia were also included in this revision. Using a combination of multivariate analysis of craniodental characters and molecular reconstructions, we critically evaluated the systematic position of the small Myotinae in the Himalayas. We establish that M. nipalensis forms a very distinct lineage (which also includes the recently described M. annatessae) and refute previous taxonomic suggestions that it is related to M. davidii. Our study also conclusively proved the common occurrence of the poorly known genus Submyotodon in the Himalayan region (Afghanistan, Pakistan, India, Nepal and China) and evidenced species-level divergences within that genus. Submyotodon species share nyctalodont or semi-nyctalodont lower molar configuration with few other small and unrelated Myotinae from Asia suggesting that these unusual dental characters are homoplasious in this subfamily. We also noticed a very confused taxonomic situation associated with many DNA sequences of Asian Myotis deposited in public repositories and call for possibilities of better data curation.

Systematic status of Campydora Cobb, 1920 (Nematoda: Campydorina)

Nematology ◽  
2003 ◽  
Vol 5 (5) ◽  
pp. 699-711 ◽  
Author(s):  
Peter Mullin ◽  
Timothy Harris ◽  
Thomas Powers
Keyword(s):  
Maximum Likelihood ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Maximum Parsimony ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Systematic Position ◽  
Nominal Species ◽  
Competing Hypotheses ◽  
Small Subunit Ribosomal Dna

AbstractThe systematic position of Campydora Cobb, 1920, which possesses many unique morphological features, especially in pharyngeal structure and stomatal armature, has long been a matter of uncertainty with the 'position of the Campydorinae' (containing only Campydora) being questionable. A review of the morphology of C. demonstrans, the only nominal species of Campydora concluded that the species warranted placement as the sole member of a monotypic suborder, Campydorina, in the order Dorylaimida. Others placed Campydorina in the order Enoplida. We conducted phylogenetic analyses, using 18s small subunit ribosomal DNA sequences generated from a number of taxa in the subclasses Enoplia and Dorylaimia, to evaluate these competing hypotheses. Although precise taxonomic placement of the genus Campydora and the identity of its closest living relatives is in need of further investigation, our analyses, under maximum parsimony, distance, and maximum likelihood criteria, unambiguously indicate that Campydora shares a common, more recent, ancestry with genera such as Alaimus, Pontonema, Tripyla and Ironus (Enoplida), rather than with any members of Dorylaimida, Mononchida or Triplonchida.

Representing and commoning the refugee crisis: The ‘assemblage’ of the Lesvos Migration Atlas

2019 ◽  
Vol 7 (1) ◽  
pp. 11-42
Author(s):  
Myrto Tsilimpounidi ◽  
Naya Tselepi ◽  
Orestis Pangalos ◽  
Chryssanthi ‘Christy’ Petropoulou
Keyword(s):  
Multiple Representations ◽  
Refugee Crisis ◽  
Photographic Material ◽  
New Material ◽  
The Commons ◽  
Collective Process ◽  
The Common ◽  
The Creation

This article uses a critical lens to examine the various representations of the so-called ‘refugee crisis’ in Lesvos, Greece through both the system of the hotspot regime and the performative acts of commoning, defined as the creation of the commons. It also proposes a process of commoning by the creation of an ‘assemblage’ of the Lesvos Migration Atlas. In this manner, the Atlas as an outcome of the research is itself a representation that embraces theory, narratives, practices, and acts; a visual and symbolic tool that provides space for photographic material, videos, artworks, (re)mappings, everyday stories, and reflective texts. At the same time, it is a collective process of capturing, writing and representing, open to new material and scripts – thus a product in a process of becoming. Overall, the online and interactive Lesvos Migration Atlas can well be approached as an ‘assemblage’ that respects the mobility and contingency of the various crises, representations and acts of commoning. In the Atlas, the refugee crisis, the hotspot regime and the common spaces that have been created are brought together through the emergence and critical confrontation of the multiple representations of Lesvos.

Towards a monophyletic classification of Lejeuneaceae III: the systematic position of Leiolejeunea

Phytotaxa ◽  
2014 ◽  
Vol 170 (3) ◽  
pp. 187 ◽  
Author(s):  
ALFONS SCHÄFER-VERWIMP ◽  
KATHRIN FELDBERG ◽  
SHANSHAN DONG ◽  
HUUB VAN MELICK ◽  
DENILSON F. PERALTA ◽  
...  
Keyword(s):  
Bayesian Inference ◽  
Maximum Likelihood ◽  
Dna Sequences ◽  
Its Region ◽  
Systematic Position ◽  
Leaf Cell ◽  
Oil Bodies ◽  
Sister Relationship ◽  
First Time

The derived liverwort Leiolejeunea grandiflora was recollected at the type locality in Jamaica after more than 100 years. The characteristics of its oil bodies were described for the first time based on the new collections. Each leaf cell possesses 2-4(-6) rather small, subhomogeneous to very finely segmented, subglobose to ellipsoidal, colorless oil bodies. The plants were either dioicous or autoicous. DNA sequences of two chloroplast regions (trnL-trnF, rbcL) and the nuclear ribosomal ITS region were obtained for two accessions of Leiolejeunea to enable the inference of the phylogenetic relationships of these plants. Based on Bayesian inference of phylogeny as well as maximum parsimony and maximum likelihood analyses of a dataset including 87 representatives of Lejeuneaceae, Leiolejeunea was found as the putative sister to either Echinolejeuneinae or Cheilolejeuneinae. Thus, we propose the new monogeneric subtribe Leiolejeuneinae with relationships to Cheilolejeuneinae and Echinolejeuneinae. The analyses included also one accession of the generitype of Cheilolejeunea, C. decidua [= Cheilolejeunea adnata]. This species was found in a well supported sister relationship with Cystolejeunea. To avoid nomenclatural confusion, we propose a wide genus concept for Cheilolejeunea including Aureolejeunea, Cyrtolejeunea, Cystolejeunea, Evansiolejeunea, Leucolejeunea, and Omphalanthus.

scholarly journals Randomness in DNA Encoded Library Selection Data Can Be Modeled for More Reliable Enrichment Calculation

2018 ◽  
Vol 23 (5) ◽  
pp. 405-416 ◽  
Author(s):  
Letian Kuai ◽  
Thomas O’Keeffe ◽  
Christopher Arico-Muendel
Keyword(s):  
Dna Sequences ◽  
Rank Order ◽  
Linear Transformations ◽  
Single Experiment ◽  
Chemical Libraries ◽  
Data Analyses ◽  
The Common ◽  
Library Selection ◽  
Generation Sequencing ◽  
Common Perception

DNA Encoded Libraries (DELs) use unique DNA sequences to tag each chemical warhead within a library mixture to enable deconvolution following affinity selection against a target protein. With next-generation sequencing, millions to billions of sequences can be read and counted to report binding events. This unprecedented capability has enabled researchers to synthesize and analyze numerically large chemical libraries. Despite the common perception that each library member undergoes a miniaturized affinity assay, selections with higher complexity libraries often produce results that are difficult to rank order. In this study, we aimed to understand the robustness of DEL selection by examining the sequencing readouts of warheads and chemotype families among a large number of experimentally repeated selections. The results revealed that (1) the output of DEL selection is intrinsically noisy but can be reliably modeled by the Poisson distribution, and (2) Poisson noise is the dominating noise at low copy counts and can be estimated even from a single experiment. We also discuss the shortcomings of data analyses based on directly using copy counts and their linear transformations, and propose a framework that incorporates proper normalization and confidence interval calculation to help researchers better understand DEL data.

A new vole from Xizang, China and the molecular phylogeny of the genus Neodon (Cricetidae: Arvicolinae)

Zootaxa ◽  
2012 ◽  
Vol 3235 (1) ◽  
pp. 1 ◽  
Author(s):  
SHAO YING LIU ◽  
ZHI YU SUN ◽  
YANG LIU ◽  
HAO WANG ◽  
PENG GUO ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Morphological Characteristics ◽  
The Body ◽  
Mitochondrial Cytochrome B ◽  
Molecular Phylogenetic ◽  
Distinct Lineage ◽  
Upper Molar ◽  
A New Species ◽  
Lower Molar

During a faunal survey in southern Xizang, we collected 27 specimens of voles that could not be identified as any knownspecies in the Arvicolinae. These specimens shared the following morphological characteristics, not corresponding withany other arvicoline species: the first lower molar possessed five closed triangles, the third upper molar exhibited eitherfour or three inner angles, and the tails of all specimens measured 30% of the body length. Their proximal baculum of theglans was very sturdy and trumpet-shaped, the distal baculum was tongue-like and sturdy, and the lateral bacula were veryshort. Molecular phylogenetic analyses based on nucleotide sequences of the mitochondrial cytochrome b (cyt b) geneclustered these specimens as a distinct lineage within the genus Neodon. According to the morphological and moleculardata, we described them as a new species, Neodon linzhiensis. Our phylogenetic analysis strongly supported that Lasio-podomys fuscus, Phaiomys leucurus, Neodon sikimensis, N. irene and the new species formed a monophyletic group, notincluding N. juldaschi. We suggested that L. fuscus and P. leucurus should be transferred to Neodon and that N. juldaschishould be removed from this genus. Following our new delineation of Neodon, we proposed a redefinition of the morphological diagnostic characters of the genus.

Morphology, molecular characterisation and systematic position of Hemiplectus muscorum Zell, 1991 (Nematoda: Plectida)

Nematology ◽  
2009 ◽  
Vol 11 (5) ◽  
pp. 719-737 ◽  
Author(s):  
Oleksandr Holovachov ◽  
Sven Boström ◽  
Manuel Mundo-Ocampo ◽  
Irma Tandingan De Ley ◽  
Melissa Yoder ◽  
...  
Keyword(s):  
Molecular Data ◽  
Small Subunit ◽  
Systematic Position ◽  
Molecular Characterisation ◽  
Posterior Pair ◽  
The Usa ◽  
New Material ◽  
Juvenile Stages ◽  
The Uk ◽  
Rrna Sequences

Abstract Hemiplectus muscorum, the type and single representative of its genus, is redescribed on the basis of abundant new material collected in the UK, Canada and the USA using both light and scanning electron microscopy. The phylogenetic relationships of the species are inferred from morphological as well as molecular data. Maximum parsimony, neighbour joining and maximum likelihood analyses of small subunit (SSU) rRNA sequences support a position nested among the Plectidae. This conflicts with our morphological assumptions of character polarity, as it implies that the absence of a valvate bulb in Hemiplectus is a reversal rather than a plesiomorphy. The excretory system of Hemiplectus is described more precisely. Its structure is highly reminiscent of the system in Plectus but differs in the presence of an anterior and posterior pair of pseudocoelomocytes flanking the renette cell. A pair of lateral somatic setae is identified as possible homologues of the 'deirids' in Plectus and Rhabditida. Measurements and descriptions are given of all four juvenile stages.

The systematic position of the Late Jurassic alleged dinosaur Macelognathus (Crocodylomorpha: Sphenosuchia)

2005 ◽  
Vol 42 (3) ◽  
pp. 307-321 ◽  
Author(s):  
Ursula B Göhlich ◽  
Luis M Chiappe ◽  
James M Clark ◽  
Hans-Dieter Sues
Keyword(s):  
Late Jurassic ◽  
Upper Jurassic ◽  
Systematic Position ◽  
Lower Jurassic ◽  
Late Triassic ◽  
Morrison Formation ◽  
Postcranial Skeleton ◽  
Western Colorado ◽  
New Material ◽  
Limb Posture

Macelognathus vagans was described by O.C. Marsh in 1884, based on a mandibular symphysis from the Upper Jurassic Morrison Formation of Wyoming. Often considered a dinosaur but later tentatively referred to the Crocodylia, its phylogenetic identity has until now been enigmatic. New material of this species from the Morrison Formation of western Colorado demonstrates its affinities with basal crocodylomorphs commonly grouped together as the Sphenosuchia, which are characterized by a gracile postcranial skeleton with erect limb posture. Macelognathus shares features with Kayentasuchus from the Lower Jurassic Kayenta Formation of Arizona and Hallopus, which may be from the Morrison Formation of eastern Colorado. The new material constitutes the youngest definitive occurrence of a sphenosuchian, previously known from the Late Triassic to the Middle or Late? Jurassic.

Are polymorphic species of Uropodina (Acari: Mesostigmata) more successful evolutionarily?—A case study of closely related species from the genus Oodinychus Berlese, 1917 based on DNA sequences

2019 ◽  
Vol 24 (5) ◽  
pp. 866
Author(s):  
Jerzy Błoszyk ◽  
Katarzyna Buczkowska ◽  
Anna Maria Bobowicz ◽  
Alina Bączkiewicz ◽  
Zbigniew Adamski ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Related Species ◽  
Habitat Preferences ◽  
Abundant Species ◽  
Systematic Position ◽  
Genetic Differences ◽  
Similar Species ◽  
Closely Related Species ◽  
Wide Range

The study presented in this research paper is the first taxonomic investigation focusing on Uropodina (Acari: Mesostigmata) mites with a brief discussion of the genetic differences of two very closely related species from the genus Oodinychus Berlese, 1917, i.e. O. ovalis (C.L. Koch, 1839) and O. karawaiewi (Berlese, 1903). These two morphologically similar species are quite common and they have a wide range of occurrence in Europe. They also live in almost the same types of habitat. However, O. ovalis usually exhibits higher abundance and frequency of occurrence. The major aim of the study was to carry out a comparative analysis of the systematic position, morphological and biological differences, as well as habitat preferences and distribution of O. ovalis and O. karawaiewi. The next aim was to ascertain whether the differences in number and frequency of these species may stem from the genetic differences at the molecular level (16S rDNA and COI). The study shows that O. ovalis, which is a more abundant species than O. karawaiewi, turned out to be genetically more polymorphic.

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