Proteomic Studies of Isolated Lipid Droplets from Bacteria, C. elegans, and Mammals

Author(s):  
Huimin Na ◽  
Peng Zhang ◽  
Yunfeng Ding ◽  
Li Yang ◽  
Yang Wang ◽  
...  
Keyword(s):  
2021 ◽  
Author(s):  
Anita Kumar ◽  
Joslyn Mills ◽  
Wesley Parker ◽  
Joshua Leitão ◽  
Celeste Ng ◽  
...  

Abstract The ability of organisms to live long depends largely on the maintenance of proteome stability via proteostatic mechanisms including translational regulation, protein chaperoning and degradation machineries. In several long-lived Caenorhabditis elegans strains, such as insulin/IGF-1 receptor daf-2 mutants, enhanced proteostatic mechanisms are accompanied by elevated intestinal lipid stores, but the role of lipid droplets in longevity has remained obscure. Here, while determining the regulatory network of the selective autophagy receptor SQST-1/SQSTM1, we unexpectedly uncovered a novel role for lipid droplets in proteostasis and longevity. Using an unbiased genomewide RNAi screening approach, we identified several SQST-1 modulators, including proteins found on lipid droplets and those prone to aggregate with age. SQST-1 accumulated on lipid droplets when autophagy was inhibited, suggesting that lipid droplets may serve a role in facilitating selective autophagy. Expansion of intestinal lipid droplets by silencing the conserved cytosolic triacylglycerol lipase gene atgl-1/ATGL enhanced autophagy, and extended lifespan in an HSF-1/HSF1-dependent and CDC-48/VCP-dependent manner. Silencing atgl-1 mitigated the age-related accumulation of SQST-1 and reduced overall ubiquitination of proteins. Reducing atgl-1 also improved proteostasis in a nematode model of Alzheimer’s disease. Subcellular analyses revealed that lipid droplets unexpectedly harbor more ubiquitinated proteins than the cytosol. Accordingly, low lipid droplet levels exacerbated the proteostatic collapse when autophagy or proteasome function was compromised. Altogether, our study uncovers a key role for lipid droplets in C. elegans as a proteostatic mediator that reduces protein ubiquitination, facilitates autophagy, and promotes longevity.


2017 ◽  
Vol 114 (33) ◽  
pp. 8841-8846 ◽  
Author(s):  
Shiwei Li ◽  
Qi Li ◽  
Yuanyuan Kong ◽  
Shuang Wu ◽  
Qingpo Cui ◽  
...  

Nuclear receptors play important roles in regulating fat metabolism and energy production in humans. The regulatory functions and endogenous ligands of many nuclear receptors are still unidentified, however. Here, we report that CYP-37A1 (ortholog of human cytochrome P450 CYP4V2), EMB-8 (ortholog of human P450 oxidoreductase POR), and DAF-12 (homolog of human nuclear receptors VDR/LXR) constitute a hormone synthesis and nuclear receptor pathway in Caenorhabditis elegans. This pathway specifically regulates the thermosensitive fusion of fat-storing lipid droplets. CYP-37A1, together with EMB-8, synthesizes a lipophilic hormone not identical to Δ7-dafachronic acid, which represses the fusion-promoting function of DAF-12. CYP-37A1 also negatively regulates thermotolerance and lifespan at high temperature in a DAF-12–dependent manner. Human CYP4V2 can substitute for CYP-37A1 in C. elegans. This finding suggests the existence of a conserved CYP4V2-POR–nuclear receptor pathway that functions in converting multilocular lipid droplets to unilocular ones in human cells; misregulation of this pathway may lead to pathogenic fat storage.


2015 ◽  
Author(s):  
Ahmed A. Chughtai ◽  
Filip Kaššák ◽  
Markéta Kostrouchová ◽  
Jan Philipp Novotný ◽  
Michael W. Krause ◽  
...  

The perilipins are lipid droplet surface proteins that contribute to fat metabolism by controlling the access of lipids to lipolytic enzymes. Perilipins have been identified in organisms as diverse as metazoa, fungi, and amoebas but strikingly not in nematodes. Here we identify the protein encoded by the W01A8.1 gene in Caenorhabditis elegans as the closest homologue of metazoan perilipin. We demonstrate that nematode W01A8.1 is a cytoplasmic protein residing on lipid droplets. Human perilipins 1 and 2 localize in transgenic C. elegans on the same structures as proteins expressed from W01A8.1 gene. Inhibition and elimination of W01A8.1 affects the appearance of lipid droplets especially visible as the formation of large lipid droplets localized around the dividing nucleus during the early zygotic divisions. This phenomenon disappears in later stages of embryogenesis indicating the existence of an additional mechanism of lipid regulation in C. elegans. Our results demonstrate that perilipin-related regulation of fat metabolism is conserved in nematodes and provide new possibilities for functional studies of lipid metabolism.


2021 ◽  
Author(s):  
Anne Brunet ◽  
Katharina Papsdorf ◽  
Amir Hosseini ◽  
Jason Miklas ◽  
Matias Cabruja ◽  
...  

Abstract Dietary mono-unsaturated fatty acids (MUFAs) are linked to human longevity and extend lifespan in several species1-12. But the mechanisms by which MUFAs promote longevity remain unclear. Here we show that an organelle hub involving lipid droplets and peroxisomes is critical for lifespan extension by MUFAs in C. elegans. MUFA accumulation increases lipid droplet number in fat storage tissues, and lipid droplet synthesis is necessary for MUFA-mediated longevity. Interestingly, the number of lipid droplets in young individuals can predict their remaining lifespan. MUFA accumulation also increases the number of peroxisomes, and peroxisome activity is required for MUFA-mediated longevity. By performing a targeted screen, we uncover a functional network between lipid droplets and peroxisomes in longevity. Interestingly, our screen also identifies ether lipids as critical components of the lipid droplet-peroxisome network. Using lipidomics, we find that the ratio of MUFAs to polyunsaturated fatty acids (PUFAs) in ether lipids is increased by MUFA accumulation. Ether lipids are involved in ferroptosis, a non-apoptotic form of cell death13-17, and MUFAs promote longevity in part via suppression of ferroptosis. Our results identify a mechanism of action for MUFAs to extend lifespan and uncover an organelle network involved in the homeostasis of MUFA-rich ether lipids. Our work also opens new avenues for lipid-based interventions to delay aging.


2015 ◽  
Author(s):  
Ahmed A. Chughtai ◽  
Filip Kaššák ◽  
Markéta Kostrouchová ◽  
Jan Philipp Novotný ◽  
Michael W. Krause ◽  
...  

The perilipins are lipid droplet surface proteins that contribute to fat metabolism by controlling the access of lipids to lipolytic enzymes. Perilipins have been identified in organisms as diverse as metazoa, fungi, and amoebas but strikingly not in nematodes. Here we identify the protein encoded by the W01A8.1 gene in Caenorhabditis elegans as the closest homologue of metazoan perilipin. We demonstrate that nematode W01A8.1 is a cytoplasmic protein residing on lipid droplets. Human perilipins 1 and 2 localize in transgenic C. elegans on the same structures as proteins expressed from W01A8.1 gene. Inhibition and elimination of W01A8.1 affects the appearance of lipid droplets especially visible as the formation of large lipid droplets localized around the dividing nucleus during the early zygotic divisions. This phenomenon disappears in later stages of embryogenesis indicating the existence of an additional mechanism of lipid regulation in C. elegans. Our results demonstrate that perilipin-related regulation of fat metabolism is conserved in nematodes and provide new possibilities for functional studies of lipid metabolism.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Elodie Mailler ◽  
Carlos M. Guardia ◽  
Xiaofei Bai ◽  
Michal Jarnik ◽  
Chad D. Williamson ◽  
...  

AbstractThe multispanning membrane protein ATG9A is a scramblase that flips phospholipids between the two membrane leaflets, thus contributing to the expansion of the phagophore membrane in the early stages of autophagy. Herein, we show that depletion of ATG9A does not only inhibit autophagy but also increases the size and/or number of lipid droplets in human cell lines and C. elegans. Moreover, ATG9A depletion blocks transfer of fatty acids from lipid droplets to mitochondria and, consequently, utilization of fatty acids in mitochondrial respiration. ATG9A localizes to vesicular-tubular clusters (VTCs) that are tightly associated with an ER subdomain enriched in another multispanning membrane scramblase, TMEM41B, and also in close proximity to phagophores, lipid droplets and mitochondria. These findings indicate that ATG9A plays a critical role in lipid mobilization from lipid droplets to autophagosomes and mitochondria, highlighting the importance of ATG9A in both autophagic and non-autophagic processes.


Author(s):  
Yangli Liu ◽  
Shimeng Xu ◽  
Congyan Zhang ◽  
Xiaotong Zhu ◽  
Mirza Ahmed Hammad ◽  
...  

2010 ◽  
Vol 11 (1) ◽  
pp. 96 ◽  
Author(s):  
Shaobing O Zhang ◽  
Rhonda Trimble ◽  
Fengli Guo ◽  
Ho Mak
Keyword(s):  

2019 ◽  
Author(s):  
Madhumanti Dasgupta ◽  
Meghana Shashikanth ◽  
Nagagireesh Bojanala ◽  
Anjali Gupta ◽  
Salil Javed ◽  
...  

ABSTRACTImmune responses to pathogenic microbes include activation of resistance and tolerance mechanisms in the host both of which are energetically expensive. In this study, we show that C. elegans exposed to Gram positive bacteria Enterococcus faecalis and Staphylococcus aureus, rapidly utilizes lipid droplets, the major energy reserve in the nematode. Feeding on E. faecalis causes developmental arrest in C. elegans larvae and growth arrest in adults, pointing to starvation response. We find that nematode’s early response to infection entails upregulation of 25 genes involved in lipid hydrolysis and downregulation of 13 lipid synthesis genes as early as 8 hours following exposure. We also show that lipid droplets play a protective role in C. elegans during infection. NHR-49, a PPARα ortholog, is required for E. faecalis induced beta-oxidation of fatty acids and immune effector production. It regulates an immunometabolic axis required for survival of the nematode on E. faecalis. Our findings reveal a facet of nutritional immunity wherein lipid droplet homeostasis plays a central role in nematode microbe interactions.


2013 ◽  
Author(s):  
Γεώργιος Τσερεβελάκης

The nonlinear imaging techniques represent the forefront of research in cell biology. These modalities constitute a powerful tool for elucidating structural and anatomical changes of biological samples and for probing functions and developmental processes in vivo at the microscopic level. The investigation of in vivo cellular and sub-cellular activities, by means of these nonlinear imaging techniques, can provide novel information related to fundamental biological problems, leading to the development of innovative methodologies that can be useful for a variety of applications in the field of biology and medicine.Within the framework of this thesis, the development and the optimization of a user-friendly compact prototype microscope system that combines different nonlinear contrast modes such as Multiphoton Excitation Fluorescence and Optical Harmonics Generation (an analytical overview of which is given in the first two chapters) with the capability of performing nanosurgery experiments was achieved. The developed set-up was employed for various biological applications, extracting novel results.We initially demonstrated the great potential of label-free Third Harmonic Generation (THG) imaging microscopy for the characterization of different developmental stages in C. Elegans embryogenesis. Furthermore, cell tracking studies were performed in live, unstained embryos through the prolonged time-dynamic monitoring (up to 7 hours) of the mitotic cell divisions during early embryoegenesis. Thus, THG contrast modality was proven to be a powerful diagnostic tool, providing valuable information and offering new insights into the complex developmental process of C. Elegans embryogenesis.The encouraging results of the previous study were exploited further in the next section of the current work, where the following of the course of pre-implantation embryo patterning by nonlinear microscopy was successfully accomplished. More specifically, THG imaging, by detecting mitochondrial / lipid body structures, could give reliable information as to the energetic status of pre-implantation embryos, time evolution of different developmental stages, embryo polarization prior to mitotic division and blastomere equivalence. Quantification of THG imaging detected highest signalling in the 2-cell stage embryos, while evaluating a 12-18% difference between blastomeres at the 8-cell stage embryos. Such a methodology provides novel, non-intrusive imaging assays to follow up intracellular structural patterning associated with the energetic status of a developing embryo, which could be successfully used for embryo selection during the in vitro fertilization process.It is well-known that lipids are the main components of cell membranes, function as signalling molecules and are the main energy store of organisms. Excess energy is stored as fat in adipocytes leading to obesity. The energy control and metabolism pathways that control lipid metabolism are still unrevealed. For this reason, we developed an alternative to the common dye-based approaches methodology connected with nonlinear THG imaging, to visualize fat deposition using C. Elegans as a model organism. As it has already been mentioned, this approach is non-destructive and alleviates the requirement of staining the sample. We excluded the possibility that lipofuscin contributes to the THG signal and instead found that fat is the main contributor of high THG signal in the intestine of C. Elegans. To validate our approach, it was shown that multiphoton excitation fluorescence, following lipid staining with BodiPy 500/510, Nile Red and Oil Red-O and THG signals were colocalized in wild type worms. To further support the efficiency of THG in detecting lipid droplets, we showed that mutant worms deficient in FAT-7 and GLO-1 genes had fewer lipid droplets, while in DAF-2 had more lipid droplets compared to wild type animals. Finally, our study indicated that fat accumulated progressively until early adulthood, while it progressively decreased during the later stages of the worm lifespan. Consequently, within the framework of this study, THG imaging technique was proven as a potential innovative tool for the monitoring of important biological procedures related to the process of aging.In the last section of the present thesis, we utilized THG microscopy as a powerful diagnostic tool for the identification of structures that were subjected to nanosurgery experiments. Femtosecond laser assisted nanosurgery of microscopic biological specimens is a relative new technique which allows the selective disruption of sub-cellular structures without causing any undesirable damage to the surrounding regions. The targeted structures are usually stained with some specific dye in order to be clearly visualized for the nanosurgery procedure. However, the validation of the final nanosurgery result is quite difficult, since the targeted structures could be simply photobleached rather than selectively destroyed. This fact constitutes a main drawback of the fluorescence technique. On the other hand, in the case of THG imaging, no staining of the biological sample is required since THG is an intrinsicproperty of matter. By employing a multimodal system which integrates nonlinear imaging modalities with nanosurgery capabilities, the selective disruption of sub-cellular structures (most probably lipid droplets) in HeLa cancer cells was successfully achieved, proving thus the reliability of the THG technique. During the last part of the study, cells’ viability post nanosurgery procedure was verified via Two Photon Excitation Fluorescence (MPEF) measurements.In conclusion, nonlinear microscopy techniques have been proven to present a great potential not only in the fundamental biomedical research, but also in ‘real-world’ problems. Furthermore, this applicability has already been extended in the diagnosis and treatment of serious diseases, such as neurodegeneration, arterial disorders and cancer.


Sign in / Sign up

Export Citation Format

Share Document