Companion Simulations and Modeling to NMR-Based Dynamical Studies of Proteins

Author(s):  
Kim A. Sharp
Crystals ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 120
Author(s):  
Qing Peng

Although meta-generalized-gradient approximations (meta-GGAs) are believed potentially the most accurate among the efficient first-principles calculations, the performance has not been accessed on the nonlinear mechanical properties of two-dimensional nanomaterials. Graphene, like two-dimensional silicon carbide g-SiC, has a wide direct band-gap with applications in high-power electronics and solar energy. Taken g-SiC as a paradigm, we have investigated the performance of meta-GGA functionals on the nonlinear mechanical properties under large strains, both compressive and tensile, along three deformation modes using Strongly Constrained and Appropriately Normed Semilocal Density Functional (SCAN) as an example. A close comparison suggests that the nonlinear mechanics predicted from SCAN are very similar to that of Perdew-Burke-Ernzerhof (PBE) formulated functional, a standard Density Functional Theory (DFT) functional. The improvement from SCAN calculation over PBE calculation is minor, despite the considerable increase of computing demand. This study could be helpful in selection of density functionals in simulations and modeling of mechanics of materials.


2021 ◽  
Vol 22 (14) ◽  
pp. 7637
Author(s):  
Liliya T. Sahharova ◽  
Evgeniy G. Gordeev ◽  
Dmitry B. Eremin ◽  
Valentine P. Ananikov

The processes involving the capture of free radicals were explored by performing DFT molecular dynamics simulations and modeling of reaction energy profiles. We describe the idea of a radical recognition assay, where not only the presence of a radical but also the nature/reactivity of a radical may be assessed. The idea is to utilize a set of radical-sensitive molecules as tunable sensors, followed by insight into the studied radical species based on the observed reactivity/selectivity. We utilize this approach for selective recognition of common radicals—alkyl, phenyl, and iodine. By matching quantum chemical calculations with experimental data, we show that components of a system react differently with the studied radicals. Possible radical generation processes were studied involving model reactions under UV light and metal-catalyzed conditions.


2009 ◽  
Vol 5 (H15) ◽  
pp. 471-479 ◽  
Author(s):  
David F. Webb ◽  
Sarah E. Gibson ◽  
Barbara J. Thompson

AbstractThe Whole Heliosphere Interval is an international observing and modeling effort to characterize the three-dimensional interconnected solar-heliospheric-planetary system, i.e., the “heliophysical” system. WHI was part of the International Heliophysical Year, on the 50th anniversary of the International Geophysical Year, and benefited from hundreds of observatories and instruments participating in IHY activities. WHI describes the 3-D heliosphere originating from solar Carrington Rotation 2068, March 20–April 16, 2008. The focus of IAU JD16 was on analyses of observations obtained during WHI, and simulations and modeling involving those data and that period. Consideration of the WHI interval in the context of surrounding solar rotations and/or compared to last solar minimum was also encouraged. Our goal was to identify connections and commonalities between the various regions of the heliosphere.


2019 ◽  
Vol 199 ◽  
pp. 496-507 ◽  
Author(s):  
Mostafa Sulaiman ◽  
Eric Climent ◽  
Abdelkader Hammouti ◽  
Anthony Wachs

Author(s):  
Anthony L. Fratino ◽  
Sinjae Hyun ◽  
Chong S. Kim

An accurate model of the human respiratory system allows health professionals to gain insight into the interactions between particulate matter (PM) and the exposed surfaces of the lung airways. Respiratory dose simulations and modeling are frequently used for evaluating health effects of inhaled toxic substances [1–4] and for analyzing the risk potentials of inhaled toxic or harmful PM such as vehicle emissions [4,5].


2012 ◽  
Vol 10 (H16) ◽  
pp. 439-470
Author(s):  
Gianna Cauzzi ◽  
Alexandra Tritschler ◽  
Yuanyong Deng

AbstractWith several large aperture optical and IR telescopes just coming on-line, or scheduled for the near future, solar physics is on the verge of a quantum leap in observational capabilities. An efficient use of such facilities will require new and innovative approaches to both observatory operations and data handling.This two-days long Special Session discussed the science expected with large solar telescopes, and started addressing the strategies necessary to optimize their scientific return. Cutting edge solar science as derived from state-of-the-art observations and numerical simulations and modeling was presented, and discussions were held on the role of large facilities in satisfying the demanding requirements of spatial and temporal resolution, stray-light correction, and spectro-polarimetric accuracy. Building on the experience of recently commissioned telescopes, critical issues for the development of future facilities were discussed. These included operational issues peculiar to large telecopes as well as strategies for their best use.


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