Application sequence modulates microbiome composition, plant growth and apple replant disease control efficiency upon integration of anaerobic soil disinfestation and mustard seed meal amendment

2020 ◽  
Vol 132 ◽  
pp. 105125 ◽  
Author(s):  
Mark Mazzola ◽  
Danielle Graham ◽  
Likun Wang ◽  
Rachel Leisso ◽  
Shashika S. Hewavitharana
Keyword(s):  
Plant Growth ◽  
Disease Control ◽  
Seed Meal ◽  
Mustard Seed ◽  
Apple Replant Disease ◽  
Soil Disinfestation ◽  
Microbiome Composition ◽  
Control Efficiency ◽  
Anaerobic Soil Disinfestation ◽  
Replant Disease

scholarly journals Field Evaluation of Reduced Rate Brassicaceae Seed Meal Amendment and Rootstock Genotype on the Microbiome and Control of Apple Replant Disease

2019 ◽  
Vol 109 (8) ◽  
pp. 1378-1391 ◽  
Author(s):  
Likun Wang ◽  
Mark Mazzola
Keyword(s):  
Disease Control ◽  
Growing Season ◽  
Application Rate ◽  
Soil Fumigation ◽  
Seed Meal ◽  
Effective Control ◽  
Apple Replant Disease ◽  
Replant Disease ◽  
Application Rates ◽  
Reduced Rate

An orchard field trial was conducted to assess the utility of reduced rate Brassicaceae seed meal (SM) amendment in concert with specific rootstock genotypes for effective control of apple replant disease. Three amendment rates of a 1:1 formulation of Brassica juncea-Sinapis alba SM were compared with preplant 1,3-dichloropropene/chloropicrin soil fumigation for disease control efficacy. When applied at the highest rate (6.6 t ha−1) in the spring of planting, SM caused significant phytotoxicity and tree mortality, which was higher for Gala/M.26 than for Gala/G.41 but was not observed at SM application rates of 2.2 or 4.4 t ha−1. SM treatment resulted in growth and yield increases of Gala/M.26 and Gala/G.41 trees in a manner similar to the fumigation treatment and significantly greater than the no treatment control. Tree growth in soils treated with SM at 4.4 t ha−1 was similar or superior to that obtained with SM at 6.6 t ha−1 and superior to that attained at an SM application rate of 2.2 t ha−1. Soil fumigation and all SM treatments reduced Pratylenchus penetrans root infestation relative to the control treatment at the end of the initial growing season. Lesion nematode root densities in the fumigation treatment, but not SM treatments, rapidly recovered and were indistinguishable from the control at the end of the second growing season. Soil fumigation and all SM treatments significantly suppressed Pythium spp. root infection relative to the control. Trees grafted to rootstock G.41 possessed lower P. penetrans root densities relative to trees grafted to rootstock M.26. One year after planting, composition of microbial communities from SM-amended soils was distinct from those detected in control and fumigated soils, and the differences were amplified with increasing SM application rate. Specific fungal and bacterial phyla associated with suppression of plant pathogens were more abundant in SM-treated soil relative to the control, and they were similar in abundance in 4.4- and 6.6-t ha−1 SM treatments. Findings from this study demonstrated that use of the appropriate apple rootstock genotype will allow for effective replant disease control at SM application rates significantly less than that utilized previously (6.6 t ha−1).

Effect of Anaerobic Soil Disinfestation and Mustard Seed Meal for Control of Charcoal Rot in California Strawberries

2016 ◽  
Vol 16 (sup1) ◽  
pp. 59-70 ◽  
Author(s):  
Joji Muramoto ◽  
Carol Shennan ◽  
Margherita Zavatta ◽  
Graeme Baird ◽  
Lucinda Toyama ◽  
...  
Keyword(s):  
Seed Meal ◽  
Mustard Seed ◽  
Charcoal Rot ◽  
Soil Disinfestation ◽  
Anaerobic Soil Disinfestation

scholarly journals Efficacy of Brassicaceous Seed Meal Formulations for the Control of Apple Replant Disease in Conventional and Organic Production Systems

Plant Disease ◽  
2010 ◽  
Vol 94 (7) ◽  
pp. 835-842 ◽  
Author(s):  
Mark Mazzola ◽  
Jack Brown
Keyword(s):  
Disease Control ◽  
Tree Growth ◽  
Vegetative Growth ◽  
Production Systems ◽  
Soil Fumigation ◽  
Organic Production ◽  
Growth And Yield ◽  
Seed Meal ◽  
Apple Replant Disease ◽  
Replant Disease

The efficacy of brassicaceous seed meals for the control of apple replant disease and the effects of such treatments on the causal pathogen complex were examined in conventional and organic production systems. When used in conjunction with a postplant application of mefenoxam, Brassica juncea and Sinapis alba seed meal soil amendments were as effective as preplant fumigation of soil with 1,3-dichloropropene-chloropicrin in terms of disease control, tree growth, and overall fruit yields of Gala/M26. Brassica napus seed meal amendment–mefenoxam soil drench also enhanced yields in a manner comparable to preplant fumigation, but vegetative growth was intermediate between the control and fumigation treatments. When applied alone, seed meal amendments failed to enhance tree growth or control disease to the level attained in response to soil fumigation. Postplant mefenoxam treatments revealed that failure of seed meal amendments to enhance tree growth and yield when used independently was due, at least in part, to increased apple root infection by Pythium spp. in B. napus and S. alba seed meal–amended soils, and by Phytophthora cambivora in B. juncea–amended soil. As mefenoxam treatment is not compatible with organic cropping systems, a seed meal blend was formulated which, based upon biological activity, was predicted to suppress known components of the target pathogen complex without need of additional treatment. Gala/M26 trees planted in soils treated with a 1:1 ratio of B. juncea:B. napus seed meal blend performed as well in terms of disease control and vegetative growth as trees cultivated in fumigated soil at an organic-certified orchard. Because these trials utilized the highly susceptible rootstock M26, the results demonstrate that these amendments are a viable alternative to soil fumigation for the control of apple replant disease in both conventional and organic systems.

scholarly journals Analysis of Environmental Variables and Carbon Input on Soil Microbiome, Metabolome and Disease Control Efficacy in Strawberry Attributable to Anaerobic Soil Disinfestation

2021 ◽  
Vol 9 (8) ◽  
pp. 1638
Author(s):  
Shashika S. Hewavitharana ◽  
Emmi Klarer ◽  
Joji Muramoto ◽  
Carol Shennan ◽  
Mark Mazzola
Keyword(s):  
Disease Control ◽  
Fusarium Wilt ◽  
Environmental Variables ◽  
Incubation Temperature ◽  
Soil Microbiome ◽  
Charcoal Rot ◽  
Soil Disinfestation ◽  
Anaerobic Soil Disinfestation ◽  
Input Type ◽  
Incubation Duration

Charcoal rot and Fusarium wilt, caused by Macrophomina phaseolina and Fusarium oxysporum f. sp. fragariae, respectively, are major soil-borne diseases of strawberry that have caused significant crop losses in California. Anaerobic soil disinfestation has been studied as an industry-level option to replace soil fumigants to manage these serious diseases. Studies were conducted to discern whether Gramineae carbon input type, incubation temperature, or incubation duration influences the efficacy of this disease control tactic. In experiments conducted using ‘low rate’ amendment applications at moderate day/night temperatures (24/18 °C), and carbon inputs (orchard grass, wheat, and rice bran) induced an initial proliferation and subsequent decline in soil density of the Fusarium wilt pathogen. This trend coincided with the onset of anaerobic conditions and a corresponding generation of various anti-fungal compounds, including volatile organic acids, hydrocarbons, and sulfur compounds. Generation of these metabolites was associated with increases in populations of Clostridium spp. Overall, carbon input and incubation temperature, but not incubation duration, significantly influenced disease suppression. All Gramineae carbon inputs altered the soil microbiome and metabolome in a similar fashion, though the timing and maximum yield of specific metabolites varied with input type. Fusarium wilt and charcoal rot suppression were superior when anaerobic soil disinfestation was conducted using standard amendment rates of 20 t ha−1 at elevated temperatures combined with a 3-week incubation period. Findings indicate that anaerobic soil disinfestation can be further optimized by modulating carbon source and incubation temperature, allowing the maximum generation of antifungal toxic volatile compounds. Outcomes also indicate that carbon input and environmental variables may influence treatment efficacy in a target pathogen-dependent manner which will require pathogen-specific optimization of treatment protocols.

scholarly journals Comparative Analysis of the Apple Root Transcriptome as Affected by Rootstock Genotype and Brassicaceae Seed Meal Soil Amendment: Implications for Plant Health

2021 ◽  
Vol 9 (4) ◽  
pp. 763
Author(s):  
Likun Wang ◽  
Tracey S. Somera ◽  
Heidi Hargarten ◽  
Loren Honaas ◽  
Mark Mazzola
Keyword(s):  
Gene Expression ◽  
Soil Amendment ◽  
Plant Health ◽  
Metagenomic Data ◽  
Seed Meal ◽  
Apple Replant Disease ◽  
Root Transcriptome ◽  
Rhizosphere Microbiome ◽  
Replant Disease ◽  
Amended Soil

Brassicaceae seed meal (SM) soil amendment has been utilized as an effective strategy to control the biological complex of organisms, which includes oomycetes, fungi, and parasitic nematodes, that incites the phenomenon termed apple replant disease. Soil-borne disease control attained in response to Brassicaceae SM amendment is reliant on multiple chemical and biological attributes, including specific SM-generated modifications to the soil/rhizosphere microbiome. In this study, we conducted a comparative analyses of apple root gene expression as influenced by rootstock genotype combined with a seed meal (SM) soil amendment. Apple replant disease (ARD) susceptible (M.26) and tolerant (G.210) rootstocks cultivated in SM-amended soil exhibited differential gene expression relative to corresponding non-treated control (NTC) orchard soil. The temporal dynamics of gene expression indicated that the SM-amended soil system altered the trajectory of the root transcriptome in a genotype-specific manner. In both genotypes, the expression of genes related to plant defense and hormone signaling were altered in SM-amended soil, suggesting SM-responsive phytohormone regulation. Altered gene expression was temporally associated with changes in rhizosphere microbiome density and composition in the SM-treated soil. Gene expression analysis across the two rootstocks cultivated in the pathogen-infested NTC soil showed genotype-specific responses indicative of different defensive strategies. These results are consistent with previously described resistance mechanisms of ARD “tolerant” rootstock cultivars and also add to our understanding of the multiple mechanisms by which SM soil amendment and the resulting rhizosphere microbiome affect apple rootstock physiology. Future studies which assess transcriptomic and metagenomic data in parallel will be important for illuminating important connections between specific rhizosphere microbiota, gene-regulation, and plant health.

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