scholarly journals Correction strategy for diffusion-weighted images corrupted with motion: application to the DTI evaluation of infants' white matter

2014 ◽  
Vol 32 (8) ◽  
pp. 981-992 ◽  
Author(s):  
Jessica Dubois ◽  
Sofya Kulikova ◽  
Lucie Hertz-Pannier ◽  
Jean-François Mangin ◽  
Ghislaine Dehaene-Lambertz ◽  
...  
Author(s):  
Evanthia E. Tripoliti ◽  
Dimitrios I. Fotiadis ◽  
Konstantia Veliou

Diffusion Tensor Imaging (DTI) is a magnetic resonance imaging (MRI) modality which can significantly improve our understanding of the brain structures and neural connectivity. DTI measures are thought to be representative of brain tissue microstructure and are particularly useful for examining organized brain regions, such as white matter tract areas. DTI measures the water diffusion tensor using diffusion weighted pulse sequences which are sensitive to microscopic random water motion. The resulting diffusion weighted images (DWI) display and allow quantification of how water diffuses along axes or diffusion encoding directions. This can help to measure and quantify the tissue’s orientation and structure, making it an ideal tool for examining cerebral white matter and neural fiber tracts. In this chapter the authors discuss the theoretical aspects of DTI, the information that can be extracted from DTI data, and the use of the extracted information for the reconstruction of fiber tracts and the diagnosis of a disease. In addition, a review of known fiber tracking algorithms is presented.


2019 ◽  
Author(s):  
Florencia Jacobacci ◽  
Jorge Jovicich ◽  
Gonzalo Lerner ◽  
Edson Amaro ◽  
Jorge L. Armony ◽  
...  

ABSTRACTBackgroundFractional anisotropy (FA) and mean diffusivity (MD) are frequently used to evaluate longitudinal changes in white matter microstructure. Recently, there has been a growing interest in identifying experience-dependent plasticity in gray matter using MD. Improving registration has thus become a major goal to enhance the detection of subtle longitudinal changes in cortical microstructure.PurposeTo optimize normalization to improve registration in gray matter and reduce variability associated with multi-session registrations.Study TypeProspective longitudinal studySubjectsTwenty-one healthy subjects (18-31 years old) underwent 9 magnetic resonance imaging (MRI) scanning sessions each.Field Strength/Sequence3.0T, diffusion-weighted multiband-accelerated sequence, MP2RAGE sequence.AssessmentDiffusion-weighted images were registered to standard space using different pipelines that varied in the features used for normalization, namely the non-linear registration algorithm (FSL vs ANTs), the registration target (FA-based vs T1-based templates), and the use of intermediate individual (FA-based or T1-based) targets. We compared the across-session test-retest reproducibility error from these normalization approaches for FA and MD in white and gray matters.Statistical TestsReproducibility errors were compared using a repeated-measures analysis of variance with pipeline as within-subject factor.ResultsThe registration of FA data to the FMRIB58 FA atlas using ANTs yielded lower reproducibility errors in white matter (p<0.0001) with respect to FSL. Moreover, using the MNI152 T1 template as the target of registration resulted in lower reproducibility errors for MD (p<0.0001), whereas the FMRIB58 FA template performed better for FA (p<0.0001). Finally, the use of an intermediate individual template improved reproducibility when registration of the FA images to the MNI152-T1 was carried out within modality (FA-FA) (p<0.05), but not via a T1-based individual template.Data ConclusionA normalization approach using ANTs to register FA images to the MNI152 T1 template via an individual FA template minimized test-retest reproducibility errors both for gray and white matter.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Johanna Seitz-Holland ◽  
Monica Lyons ◽  
Leila Kushan ◽  
Amy Lin ◽  
Julio E. Villalon-Reina ◽  
...  

AbstractDeletions and duplications at the 22q11.2 locus are associated with significant neurodevelopmental and psychiatric morbidity. Previous diffusion-weighted magnetic resonance imaging (MRI) studies in 22q11.2 deletion carriers (22q-del) found nonspecific white matter (WM) abnormalities, characterized by higher fractional anisotropy. Here, utilizing novel imaging and processing methods that allow separation of signal contribution from different tissue properties, we investigate whether higher anisotropy is driven by (1) extracellular changes, (2) selective degeneration of secondary fibers, or (3) volumetric differences. We further, for the first time, investigate WM microstructure in 22q11.2 duplication carriers (22q-dup). Multi-shell diffusion-weighted images were acquired from 26 22q-del, 19 22q-dup, and 18 healthy individuals (HC). Images were fitted with the free-water model to estimate anisotropy following extracellular free-water elimination and with the novel BedpostX model to estimate fractional volumes of primary and secondary fiber populations. Outcome measures were compared between groups, with and without correction for WM and cerebrospinal fluid (CSF) volumes. In 22q-del, anisotropy following free-water elimination remained significantly higher compared with controls. BedpostX did not identify selective secondary fiber degeneration. Higher anisotropy diminished when correcting for the higher CSF and lower WM volumes. In contrast, 22q-dup had lower anisotropy and greater extracellular space than HC, not influenced by macrostructural volumes. Our findings demonstrate opposing effects of reciprocal 22q11.2 copy-number variation on WM, which may arise from distinct pathologies. In 22q-del, microstructural abnormalities may be secondary to enlarged CSF space and more densely packed WM. In 22q-dup, we see evidence for demyelination similar to what is commonly observed in neuropsychiatric disorders.


Blood ◽  
2009 ◽  
Vol 114 (22) ◽  
pp. 2270-2270
Author(s):  
Amer Beitinjaneh ◽  
Alexander McKinney ◽  
Qing Cao ◽  
Daniel J. Weisdorf

Abstract Abstract 2270 Poster Board II-247 Central nervous system (CNS) toxicity after HCT is an uncommon, but serious cause of transplant related mortality. Recently, toxic leukoencephalopathy is better defined using advanced MRI techniques. We reviewed all the medical records of HCT recipients (2000-2007) who received Flu-containing conditioning regimens in our institution and developed sever central nervous toxicity. We asked a specialized neuroradiologist to review their brain imagines blindly from patients' outcomes. From our database review, cases were excluded if neurologic symptoms were related to peripheral neuropathy, CNS infection, intracranial bleeding, stroke, CNS malignancy, sedative medication effect, or metabolic disturbance. We were able to identify 39 cases of sever leukoencephalopathy out of total1596 transplants and we described 3 distinct Flu-associated clinical syndromes with unique clinical and radiographic characteristics. Posterior reversible encephalopathy syndrome (PRES, n=17, 1.1%) presented with seizures, persistent headache, or visual changes along with varying compromise in mental status. Acute Toxic Leukoencephalopathy, (ATL, n=11, 0.7%) resulted mainly in cognitive dysfunction, decreased levels of consciousness, and some vision changes. A third distinct Leukoencephalopathy syndrome (LS, n=11, 0.7%) presented similarly to ATL but with less specific and chronic-appearing deep white matter changes on MRI. PRES favors the cortex/subcortical white matter (SCWM) in the early phases and ATL/LS favor the deep periventricular white matter (PVWM) in the early stages, these two entities can usually be distinguished from each other utilizing the combination of fluid-attenuated inversion recovery (FLAIR) and diffusion-weighted images (DWI) MRI techniques (Typically diffusion is reduced in ATL and normal in PRES). Other associated features included: younger age in PRES (median 20 years vs. 55 in ATL and 42 in LS). ATL and LS can be reversible, but to a lesser degree than PRES. PRES developed later (median 77 days post HCT) compared to 30 and 31 days for ATL and LS. Patients who developed ATL had shorter overall survivals than patients with PRES and LS patients (Median overall survival was 6.9 month for PRES compared to 2 months in ATL). ATL/LS compared to PRES were more likely to present with cognitive dysfunction than seizure (refer to table). Flu-associated ATL/LS may be more common in older patients, those with renal dysfunction, prior CNS radiation or chemotherapy, and in patients received higher dose of Flu compared to PRES. Our review suggests Brian MRI with Diffusion-weighted imaging (DWI) can add considerable diagnostic and prognostic information. Prospective Flu pharmacokinetic and pharmacogenetic studies may be needed to determine the most appropriate Flu dosing to avoid neurotoxicity. Table: Brief summary of patients' characteristics and clinical features. Different Groups Total PRES ATL LS Number 39 17 11 11 Median Age (range) 43 (3-69) 20 55 42 Total conditioning FLU (mg/m2) 200 144 200 200 Baseline Cr CL (mg/min/1.73 m2) 92 100.6 81 85.3 Previous     Flud 3 0 3 0     CNS Therapy 13 2 6 5     HCT 9 2 5 2 Presenting Symptom     Seizure 8 (21%) 7 (41%) 0 1     Confusion /cognitive 12 (30%) 2(12%) 5 (46%) 5 (46%) Median survival (days) 169 208 66 204 Death Related 13 2 7 4 Disclosures: No relevant conflicts of interest to declare.


Diagnostics ◽  
2020 ◽  
Vol 10 (9) ◽  
pp. 698
Author(s):  
Sangun Nah ◽  
Sungwoo Choi ◽  
Han Bit Kim ◽  
Jungbin Lee ◽  
Sun-Uk Lee ◽  
...  

Introduction: Carbon monoxide (CO) poisoning can result in delayed neurological sequelae (DNS). Factors predicting DNS are still controversial. This study aims to determine whether acute brain lesions observed using diffusion-weighted magnetic resonance imaging (MRI) following acute CO poisoning are related to the subsequent development of DNS. Methods: This prospective study was conducted on patients with CO poisoning treated at a university hospital in Bucheon, Korea. From August 2016 to July 2019, a total of 283 patients visited the hospital because of CO poisoning. Exclusion criteria included age under 18 years, refusing hyperbaric oxygen therapy, refusing MRI, being discharged against medical advice, being lost to follow-up, having persistent neurological symptoms at discharge, and being transferred from another hospital 24 h after exposure. Results: Of the 154 patients included in the final study, acute brain lesions on MRI (ABLM) were observed in 49 patients (31.8%) and DNS occurred in 30 patients (19.5%). In a logistic regression analysis, lower Glasgow coma scale score and higher exposure time were associated with DNS, and the presence of ABLM in white matter was significantly associated with DNS (OR 6.741; 95% CI, 1.843–24.660; p = 0.004). Conclusion: The presence of ABLM in white matter was significantly related to the occurrence of DNS. Early prediction of the risk of developing DNS through MRI may be helpful in treating patients with CO poisoning.


1998 ◽  
Vol 39 (1) ◽  
pp. 21
Author(s):  
Soo Jung Choi ◽  
Choong Gon Choi ◽  
Jae Kyun Kim ◽  
Jung Hoon Kim ◽  
Jae Hong Lee ◽  
...  

2021 ◽  
Author(s):  
Weihong Yuan ◽  
Jonathan Dudley ◽  
Alexis B Slutsky-Ganesh ◽  
James Leach ◽  
Pete Scheifele ◽  
...  

ABSTRACT Introduction Special Weapons and Tactics (SWAT) personnel who practice breaching with blast exposure are at risk for blast-related head trauma. We aimed to investigate the impact of low-level blast exposure on underlying white matter (WM) microstructure based on diffusion tensor imaging (DTI) and neurite orientation and density imaging (NODDI) in SWAT personnel before and after breacher training. Diffusion tensor imaging is an advanced MRI technique sensitive to underlying WM alterations. NODDI is a novel MRI technique emerged recently that acquires diffusion weighted data from multiple shells modeling for different compartments in the microstructural environment in the brain. We also aimed to evaluate the effect of a jugular vein compression collar device in mitigating the alteration of the diffusion properties in the WM as well as its role as a moderator on the association between the diffusion property changes and the blast exposure. Materials and Methods Twenty-one SWAT personnel (10 non-collar and 11 collar) completed the breacher training and underwent MRI at both baseline and after blast exposure. Diffusion weighted data were acquired with two shells (b = 1,000, 2,000 s/mm2) on 3T Phillips scanners. Diffusion tensor imaging metrices, including fractional anisotropy, mean, axial, and radial diffusivity, and NODDI metrics, including neurite density index (NDI), isotropic volume fraction (fiso), and orientation dispersion index, were calculated. Tract-based spatial statistics was used in the voxel-wise statistical analysis. Post hoc analyses were performed for the quantification of the pre- to post-blast exposure diffusion percentage change in the WM regions with significant group difference and for the assessment of the interaction of the relationship between blast exposure and diffusion alteration. Results The non-collar group exhibited significant pre- to post-blast increase in NDI (corrected P &lt; .05) in the WM involving the right internal capsule, the right posterior corona radiation, the right posterior thalamic radiation, and the right sagittal stratum. A subset of these regions showed significantly greater alteration in NDI and fiso in the non-collar group when compared with those in the collar group (corrected P &lt; .05). In addition, collar wearing exhibited a significant moderating effect for the alteration of fiso for its association with average peak pulse pressure. Conclusions Our data provided initial evidence of the impact of blast exposure on WM diffusion alteration based on both DTI and NODDI. The mitigating effect of WM diffusivity changes and the moderating effect of collar wearing suggest that the device may serve as a promising solution to protect WM against blast exposure.


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