A novel approach combined transfer learning and deep learning to predict TMB from histology image

2020 ◽  
Vol 135 ◽  
pp. 244-248 ◽  
Author(s):  
Liansheng Wang ◽  
Yudi Jiao ◽  
Ying Qiao ◽  
Nianyin Zeng ◽  
Rongshan Yu
Keyword(s):  
Deep Learning ◽  
Transfer Learning ◽  
Novel Approach

scholarly journals Efficient Pneumonia Detection in Chest Xray Images Using Deep Transfer Learning

Diagnostics ◽  
2020 ◽  
Vol 10 (6) ◽  
pp. 417 ◽  
Author(s):  
Mohammad Farukh Hashmi ◽  
Satyarth Katiyar ◽  
Avinash G Keskar ◽  
Neeraj Dhanraj Bokde ◽  
Zong Woo Geem
Keyword(s):  
Deep Learning ◽  
Transfer Learning ◽  
Data Augmentation ◽  
Medical Center ◽  
Training Dataset ◽  
Test Accuracy ◽  
X Rays ◽  
Learning Models ◽  
Novel Approach ◽  
Unseen Data

Pneumonia causes the death of around 700,000 children every year and affects 7% of the global population. Chest X-rays are primarily used for the diagnosis of this disease. However, even for a trained radiologist, it is a challenging task to examine chest X-rays. There is a need to improve the diagnosis accuracy. In this work, an efficient model for the detection of pneumonia trained on digital chest X-ray images is proposed, which could aid the radiologists in their decision making process. A novel approach based on a weighted classifier is introduced, which combines the weighted predictions from the state-of-the-art deep learning models such as ResNet18, Xception, InceptionV3, DenseNet121, and MobileNetV3 in an optimal way. This approach is a supervised learning approach in which the network predicts the result based on the quality of the dataset used. Transfer learning is used to fine-tune the deep learning models to obtain higher training and validation accuracy. Partial data augmentation techniques are employed to increase the training dataset in a balanced way. The proposed weighted classifier is able to outperform all the individual models. Finally, the model is evaluated, not only in terms of test accuracy, but also in the AUC score. The final proposed weighted classifier model is able to achieve a test accuracy of 98.43% and an AUC score of 99.76 on the unseen data from the Guangzhou Women and Children’s Medical Center pneumonia dataset. Hence, the proposed model can be used for a quick diagnosis of pneumonia and can aid the radiologists in the diagnosis process.

scholarly journals Sequential transfer learning based on hierarchical clustering for improved performance in deep learning based food segmentation

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Mia S. N. Siemon ◽  
A. S. M. Shihavuddin ◽  
Gitte Ravn-Haren
Keyword(s):  
Deep Learning ◽  
Transfer Learning ◽  
Hierarchical Clustering ◽  
Automated Identification ◽  
Network Training ◽  
Optical Images ◽  
Robust Model ◽  
Novel Approach ◽  
Improved Performance ◽  
Danish School

AbstractAccurately segmenting foods from optical images is a challenging task, yet becoming possible with the help of recent advances in Deep Learning based solutions. Automated identification of food items opens up possibilities of useful applications like nutrition intake monitoring. Given large variations in food choices, Deep Learning based solutions still struggle to generate human level accuracy. In this work, we propose a novel Sequential Transfer Learning method using Hierarchical Clustering. This novel approach simulates a step by step problem solving framework based on clustering of similar types of foods. The proposed approach provides up to 6% gain in accuracy compared to traditional network training and generated a robust model performing better in challenging unseen cases. This approach is also tested for segmenting foods in Danish school children meals for dietary intake monitoring as an application.

scholarly journals Big transfer learning for automated skin cancer classification

2021 ◽  
Vol 23 (3) ◽  
pp. 1611
Author(s):  
Zinah Mohsin Arkah ◽  
Dalya S. Al-Dulaimi ◽  
Ahlam R. Khekan
Keyword(s):  
Deep Learning ◽  
Skin Cancer ◽  
Transfer Learning ◽  
Image Features ◽  
Cancer Classification ◽  
Automated Classification ◽  
Novel Approach ◽  
Learned Features ◽  
Manual Classification

<p>Skin cancer is an example of the most dangerous disease. Early diagnosis of skin cancer can save many people’s lives. Manual classification methods are time-consuming and costly. Deep learning has been proposed for the automated classification of skin cancer. Although deep learning showed impressive performance in several medical imaging tasks, it requires a big number of images to achieve a good performance. The skin cancer classification task suffers from providing deep learning with sufficient data due to the expensive annotation process and required experts. One of the most used solutions is transfer learning of pre-trained models of the ImageNet dataset. However, the learned features of pre-trained models are different from skin cancer image features. To end this, we introduce a novel approach of transfer learning by training the pre-trained models of the ImageNet (VGG, GoogleNet, and ResNet50) on a large number of unlabelled skin cancer images, first. We then train them on a small number of labeled skin images. Our experimental results proved that the proposed method is efficient by achieving an accuracy of 84% with ResNet50 when directly trained with a small number of labeled skin and 93.7% when trained with the proposed approach.</p>

Deep Learning for text in limted data settings

2020 ◽  
Author(s):  
Pathikkumar Patel ◽  
Bhargav Lad ◽  
Jinan Fiaidhi
Keyword(s):  
Machine Learning ◽  
Time Series ◽  
Deep Learning ◽  
Sentiment Analysis ◽  
Transfer Learning ◽  
Text Classification ◽  
State Of The Art ◽  
Time Series Forecasting ◽  
Text Data ◽  
Performance Levels

During the last few years, RNN models have been extensively used and they have proven to be better for sequence and text data. RNNs have achieved state-of-the-art performance levels in several applications such as text classification, sequence to sequence modelling and time series forecasting. In this article we will review different Machine Learning and Deep Learning based approaches for text data and look at the results obtained from these methods. This work also explores the use of transfer learning in NLP and how it affects the performance of models on a specific application of sentiment analysis.

scholarly journals Deep Learning for Transient Image Reconstruction from ToF Data

Sensors ◽  
2021 ◽  
Vol 21 (6) ◽  
pp. 1962
Author(s):  
Enrico Buratto ◽  
Adriano Simonetto ◽  
Gianluca Agresti ◽  
Henrik Schäfer ◽  
Pietro Zanuttigh
Keyword(s):  
Deep Learning ◽  
State Of The Art ◽  
Light Response ◽  
Real Data ◽  
Depth Image ◽  
Learning Approach ◽  
Multiple Reflections ◽  
Noisy Input ◽  
Novel Approach ◽  
Incoming Light

In this work, we propose a novel approach for correcting multi-path interference (MPI) in Time-of-Flight (ToF) cameras by estimating the direct and global components of the incoming light. MPI is an error source linked to the multiple reflections of light inside a scene; each sensor pixel receives information coming from different light paths which generally leads to an overestimation of the depth. We introduce a novel deep learning approach, which estimates the structure of the time-dependent scene impulse response and from it recovers a depth image with a reduced amount of MPI. The model consists of two main blocks: a predictive model that learns a compact encoded representation of the backscattering vector from the noisy input data and a fixed backscattering model which translates the encoded representation into the high dimensional light response. Experimental results on real data show the effectiveness of the proposed approach, which reaches state-of-the-art performances.

scholarly journals Deep Transfer Learning Based Intrusion Detection System for Electric Vehicular Networks

Sensors ◽  
2021 ◽  
Vol 21 (14) ◽  
pp. 4736
Author(s):  
Sk. Tanzir Mehedi ◽  
Adnan Anwar ◽  
Ziaur Rahman ◽  
Kawsar Ahmed
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Intrusion Detection ◽  
Real Time ◽  
Transfer Learning ◽  
Security Requirements ◽  
Detection Accuracy ◽  
Area Network ◽  
Complex Data ◽  
Network Intrusion

The Controller Area Network (CAN) bus works as an important protocol in the real-time In-Vehicle Network (IVN) systems for its simple, suitable, and robust architecture. The risk of IVN devices has still been insecure and vulnerable due to the complex data-intensive architectures which greatly increase the accessibility to unauthorized networks and the possibility of various types of cyberattacks. Therefore, the detection of cyberattacks in IVN devices has become a growing interest. With the rapid development of IVNs and evolving threat types, the traditional machine learning-based IDS has to update to cope with the security requirements of the current environment. Nowadays, the progression of deep learning, deep transfer learning, and its impactful outcome in several areas has guided as an effective solution for network intrusion detection. This manuscript proposes a deep transfer learning-based IDS model for IVN along with improved performance in comparison to several other existing models. The unique contributions include effective attribute selection which is best suited to identify malicious CAN messages and accurately detect the normal and abnormal activities, designing a deep transfer learning-based LeNet model, and evaluating considering real-world data. To this end, an extensive experimental performance evaluation has been conducted. The architecture along with empirical analyses shows that the proposed IDS greatly improves the detection accuracy over the mainstream machine learning, deep learning, and benchmark deep transfer learning models and has demonstrated better performance for real-time IVN security.

scholarly journals Effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Young-Gon Kim ◽  
Sungchul Kim ◽  
Cristina Eunbee Cho ◽  
In Hye Song ◽  
Hee Jin Lee ◽  
...  
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Transfer Learning ◽  
Frozen Section ◽  
Medical Center ◽  
External Validation ◽  
Model Performance ◽  
Classification Model ◽  
Training Dataset

AbstractFast and accurate confirmation of metastasis on the frozen tissue section of intraoperative sentinel lymph node biopsy is an essential tool for critical surgical decisions. However, accurate diagnosis by pathologists is difficult within the time limitations. Training a robust and accurate deep learning model is also difficult owing to the limited number of frozen datasets with high quality labels. To overcome these issues, we validated the effectiveness of transfer learning from CAMELYON16 to improve performance of the convolutional neural network (CNN)-based classification model on our frozen dataset (N = 297) from Asan Medical Center (AMC). Among the 297 whole slide images (WSIs), 157 and 40 WSIs were used to train deep learning models with different dataset ratios at 2, 4, 8, 20, 40, and 100%. The remaining, i.e., 100 WSIs, were used to validate model performance in terms of patch- and slide-level classification. An additional 228 WSIs from Seoul National University Bundang Hospital (SNUBH) were used as an external validation. Three initial weights, i.e., scratch-based (random initialization), ImageNet-based, and CAMELYON16-based models were used to validate their effectiveness in external validation. In the patch-level classification results on the AMC dataset, CAMELYON16-based models trained with a small dataset (up to 40%, i.e., 62 WSIs) showed a significantly higher area under the curve (AUC) of 0.929 than those of the scratch- and ImageNet-based models at 0.897 and 0.919, respectively, while CAMELYON16-based and ImageNet-based models trained with 100% of the training dataset showed comparable AUCs at 0.944 and 0.943, respectively. For the external validation, CAMELYON16-based models showed higher AUCs than those of the scratch- and ImageNet-based models. Model performance for slide feasibility of the transfer learning to enhance model performance was validated in the case of frozen section datasets with limited numbers.

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