Analyses of community structure and role of immobilized bacteria system in the bioremediation process of diesel pollution seawater

2021 ◽  
pp. 149439
Author(s):  
Fu Xinge ◽  
Qiao Yanlu ◽  
Xue Jianliang ◽  
Cheng Dongle ◽  
Chen Chuan ◽  
...  
Keyword(s):  
Community Structure ◽  
Immobilized Bacteria

An inter-dependence of flood and drought: disentangling amphibian beta diversity in seasonal floodplains

2017 ◽  
Vol 68 (11) ◽  
pp. 2115 ◽  
Author(s):  
Leonardo F. B. Moreira ◽  
Tainá F. Dorado-Rodrigues ◽  
Vanda L. Ferreira ◽  
Christine Strüssmann
Keyword(s):  
Community Structure ◽  
Environmental Factors ◽  
Quantitative Data ◽  
Explanatory Variable ◽  
Biotic Interactions ◽  
Ecological Role ◽  
Β Diversity ◽  
Amphibian Community ◽  
Dry Seasons

Species composition in floodplains is often affected by different structuring factors. Although floods play a key ecological role, habitat selection in the dry periods may blur patterns of biodiversity distribution. Here, we employed a partitioning framework to investigate the contribution of turnover and nestedness to β-diversity patterns in non-arboreal amphibians from southern Pantanal ecoregion. We investigated whether components of β-diversity change by spatial and environmental factors. We sampled grasslands and dense arboreal savannas distributed in 12 sampling sites across rainy and dry seasons, and analysed species dissimilarities using quantitative data. In the savannas, both turnover and nestedness contributed similarly to β diversity. However, we found that β diversity is driven essentially by turnover, in the grasslands. In the rainy season, balanced variation in abundance was more related to altitude and factors that induce spatial patterns, whereas dissimilarities were not related to any explanatory variable during dry season. In the Pantanal ecoregion, amphibian assemblages are influenced by a variety of seasonal constraints on terrestrial movements and biotic interactions. Our findings highlighted the role of guild-specific patterns and indicated that mass effects are important mechanisms creating amphibian community structure in the Pantanal.

scholarly journals Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

mBio ◽  
2013 ◽  
Vol 4 (2) ◽  
Author(s):  
Jizhong Zhou ◽  
Wenzong Liu ◽  
Ye Deng ◽  
Yi-Huei Jiang ◽  
Kai Xue ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Diversity ◽  
Microbial Community Structure ◽  
Community Assembly ◽  
Ecosystem Functioning ◽  
Dominant Role ◽  
Microbial Biodiversity ◽  
Stochastic Assembly

ABSTRACTThe processes and mechanisms of community assembly and its relationships to community functioning are central issues in ecology. Both deterministic and stochastic factors play important roles in shaping community composition and structure, but the connection between community assembly and ecosystem functioning remains elusive, especially in microbial communities. Here, we used microbial electrolysis cell reactors as a model system to examine the roles of stochastic assembly in determining microbial community structure and functions. Under identical environmental conditions with the same source community, ecological drift (i.e., initial stochastic colonization) and subsequent biotic interactions created dramatically different communities with little overlap among 14 identical reactors, indicating that stochastic assembly played dominant roles in determining microbial community structure. Neutral community modeling analysis revealed that deterministic factors also played significant roles in shaping microbial community structure in these reactors. Most importantly, the newly formed communities differed substantially in community functions (e.g., H2production), which showed strong linkages to community structure. This study is the first to demonstrate that stochastic assembly plays a dominant role in determining not only community structure but also ecosystem functions. Elucidating the links among community assembly, biodiversity, and ecosystem functioning is critical to understanding ecosystem functioning, biodiversity preservation, and ecosystem management.IMPORTANCEMicroorganisms are the most diverse group of life known on earth. Although it is well documented that microbial natural biodiversity is extremely high, it is not clear why such high diversity is generated and maintained. Numerous studies have established the roles of niche-based deterministic factors (e.g., pH, temperature, and salt) in shaping microbial biodiversity, the importance of stochastic processes in generating microbial biodiversity is rarely appreciated. Moreover, while microorganisms mediate many ecosystem processes, the relationship between microbial diversity and ecosystem functioning remains largely elusive. Using a well-controlled laboratory system, this study provides empirical support for the dominant role of stochastic assembly in creating variations of microbial diversity and the first explicit evidence for the critical role of community assembly in influencing ecosystem functioning. The results presented in this study represent important contributions to the understanding of the mechanisms, especially stochastic processes, involved in shaping microbial biodiversity.

scholarly journals STRUKTUR KOMUNITAS ZOOPLANKTON DI PERAIRAN KABUPATEN LOMBOK UTARA, PROVINSI NUSA TENGGARA BARAT

2018 ◽  
Vol 18 (2) ◽  
Author(s):  
Muhammad Junaidi ◽  
Nurliah Nurliah ◽  
Fariq Azhar
Keyword(s):  
Water Quality ◽  
Community Structure ◽  
Aquatic Ecosystems ◽  
Zooplankton Community ◽  
Geographical Information ◽  
Zooplankton Community Structure ◽  
Ecological Index ◽  
Physical Chemical ◽  
Chemical Conditions

ABSTRAKMengingat peranan zooplankton dalam ekosistem perairan sangat penting, maka dilakukan penelitian dengan tujuan untuk menganalisis struktur komunitas zooplankton yang meliputi jenis, kelimpahan, dan indek ekologi, dan  kaitan  distribusi zooplankton dan kualitas perairan di Perairan Kabupaten Lombok Utara. Pengumpulan data dirancang dengan sistem informasi geografis (SIG) pada 23 stasiun pengamatan yang ditentukan dengan teknik acak sederhana.  Hasil penelitian menunjukkan bahwa jenis dan kelimpahan zooplankton yang ditemukan di Perairan Kabupaten Lombok Utara cukup bervariasi dengan jumlah genus  sebanyak 9 yang terbagi  dari  5 kelas.  Berdasarkan perhitungan indeks ekologi menunjukkan bahwa struktur  komunitas zooplankton dalam kategori perairan yang kurang stabil. Kelimpahan dan indeks ekologi zooplankton  dipengaruhi oleh kondisi lingkungan (fisik-kimia) perairan antara lain  kecerahan, pH dan oksigen terlarut. Kata kunci : zooplankton,  struktur komunitas, kualitas perairan, kelimpahanABSTRACTConsidering that the role of zooplankton in aquatic ecosystems is very  important, research is carried out with the aim of analyzing zooplankton community structure which includes the type, abundance, and ecological index, and the relation of zooplankton distribution and water quality in North Lombok Regency Waters. Data collection was designed with a geographical information system (GIS) on 23 observation stations that were determined by simple random techniques. he results of this study indicate that the type and abundance of zooplankton found in the waters of North Lombok Regency are quite varied with the number of genus as many as 9 which are divided into 5 classes. Based on the calculation of the ecological index shows that the zooplankton community structure is in the category of less stable waters. The abundance and ecological index of zooplankton is influenced by the environmental (physical-chemical) conditions of the waters including brightness, pH and dissolved oxygen. Keywords: zooplankton, community structure, water quality, abundance 

scholarly journals Rare microbes from diverse Earth biomes dominate community activity

2019 ◽  
Author(s):  
Rohan Sachdeva ◽  
Barbara J. Campbell ◽  
John F. Heidelberg
Keyword(s):  
Community Structure ◽  
Microbial Activity ◽  
Ecosystem Function ◽  
Total Activity ◽  
Reaction Rates ◽  
Community Activity ◽  
Crucial Component ◽  
Tightly Coupled ◽  
The Relationship

AbstractMicrobes are the Earth’s most numerous organisms and are instrumental in driving major global biological and chemical processes. Microbial activity is a crucial component of all ecosystems, as microbes have the potential to control any major biochemical process. In recent years, considerable strides have been made in describing the community structure,i.e. diversity and abundance, of microbes from the Earth’s major biomes. In virtually all environments studied, a few highly abundant taxa dominate the structure of microbial communities. Still, microbial diversity is high and is concentrated in the less abundant, or rare, fractions of the community,i.e. the “long tail” of the abundance distribution. The relationship between microbial community structure and activity, specifically the role of rare microbes, and its connection to ecosystem function, is not fully understood. We analyzed 12.3 million metagenomic and metatranscriptomic sequence assemblies and their genes from environmental, human, and engineered microbiomes, and show that microbial activity is dominated by rare microbes (96% of total activity) across all measured biomes. Further, rare microbial activity was comprised of traits that are fundamental to ecosystem and organismal health,e.g. biogeochemical cycling and infectious disease. The activity of rare microbes was also tightly coupled to temperature, revealing a link between basic biological processes,e.g. reaction rates, and community activity. Our study provides a broadly applicable and predictable paradigm that implicates rare microbes as the main microbial drivers of ecosystem function and organismal health.

scholarly journals The human microbiome in hematopoiesis and hematologic disorders

Blood ◽  
2015 ◽  
Vol 126 (3) ◽  
pp. 311-318 ◽  
Author(s):  
Veronica E. Manzo ◽  
Ami S. Bhatt
Keyword(s):  
Community Structure ◽  
Human Health ◽  
Ribosomal Rna ◽  
Human Microbiome ◽  
Human Cells ◽  
Metagenomic Sequencing ◽  
Hematologic Disorders ◽  
Hematologic Diseases ◽  
Shotgun Metagenomic Sequencing

AbstractHumans are now understood to be in complex symbiosis with a diverse ecosystem of microbial organisms, including bacteria, viruses, and fungi. Efforts to characterize the role of these microorganisms, commonly referred as the microbiota, in human health have sought to answer the fundamental questions of what organisms are present, how are they functioning to interact with human cells, and by what mechanism are these interactions occurring. In this review, we describe recent efforts to describe the microbiota in healthy and diseased individuals, summarize the role of various molecular technologies (ranging from 16S ribosomal RNA to shotgun metagenomic sequencing) in enumerating the community structure of the microbiota, and explore known interactions between the microbiota and humans, with a focus on the microbiota’s role in hematopoiesis and hematologic diseases.

scholarly journals Plumage iridescence is associated with distinct feather microbiota in a tropical passerine

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Veronika Gvoždíková Javůrková ◽  
Erik D. Enbody ◽  
Jakub Kreisinger ◽  
Kryštof Chmel ◽  
Jakub Mrázek ◽  
...  
Keyword(s):  
Sexual Selection ◽  
Community Structure ◽  
Microbial Communities ◽  
Plumage Coloration ◽  
Microbial Load ◽  
Sexual Dichromatism ◽  
Physiological Processes ◽  
Fitness Consequences ◽  
Future Work

Abstract Birds present a stunning diversity of plumage colors that have long fascinated evolutionary ecologists. Although plumage coloration is often linked to sexual selection, it may impact a number of physiological processes, including microbial resistance. At present, the degree to which differences between pigment-based vs. structural plumage coloration may affect the feather microbiota remains unanswered. Using quantitative PCR and DGGE profiling, we investigated feather microbial load, diversity and community structure among two allopatric subspecies of White-shouldered Fairywren, Malurus alboscapulatus that vary in expression of melanin-based vs. structural plumage coloration. We found that microbial load tended to be lower and feather microbial diversity was significantly higher in the plumage of black iridescent males, compared to black matte females and brown individuals. Moreover, black iridescent males had distinct feather microbial communities compared to black matte females and brown individuals. We suggest that distinctive nanostructure properties of iridescent male feathers or different investment in preening influence feather microbiota community composition and load. This study is the first to point to structural plumage coloration as a factor that may significantly regulate feather microbiota. Future work might explore fitness consequences and the role of microorganisms in the evolution of avian sexual dichromatism, with particular reference to iridescence.

Sign in / Sign up

Export Citation Format

Share Document