Comparison of models to estimate maternal effects for weaning weight of Swiss Angus cattle fitting a sire×herd interaction as an additional random effect

1999 ◽  
Vol 60 (2-3) ◽  
pp. 203-208 ◽  
Author(s):  
M Berweger Baschnagel ◽  
J Moll ◽  
N Künzi
2019 ◽  
Vol 97 (Supplement_3) ◽  
pp. 84-84
Author(s):  
Jared E Decker ◽  
David J Patterson ◽  
Brian Arisman ◽  
Troy N Rowan ◽  
Jordan M Thomas ◽  
...  

Abstract One of the goals of the National Center of Applied Reproduction and Genomics (NCARG) is to demonstrate in real-world settings the potential of new technologies. To this end, we evaluated the predictive ability of the Zoetis GeneMax Advantage genomic prediction. The GeneMax Advantage test analyzes tens of thousands of single nucleotide polymorphisms (SNP) to predict the genetic potential of a commercial Angus female. Genetic predictions are provided for Calving Ease Maternal, Weaning Weight, Heifer Pregnancy, Milk, Mature Weight, Dry Matter Intake, Carcass Weight, Marbling, and Yield. Indices of economically important traits are estimated on an index score (1–100 scale) and are reported in three indices; Cow Advantage Index, Feeder Advantage Index, and Total Advantage Index. Producers can use the scores and indices to make selection, culling, and mating decisions. To measure the accuracy of the trait predictions, data from commercial Angus females and their progeny at the University of Missouri Thompson Research Center was utilized to analyze Weaning Weight, Milk, Marbling, Fat Thickness, Ribeye Area and Carcass Weight. Progeny phenotypic data was matched to the respective dam, and the genomic predictions were then compared to the phenotypic data using correlation and linear models in R software. Linear models accounted for differences in sex, birth year, and the random effect of sire. Interestingly, all genomic predictions had correlations with progeny phenotypes that were significantly different from zero (P-value < 0.05). Likewise in the linear models, genomic predictions for all analyzed traits were significantly associated with calf performance (Table 1). Academics, farmers and ranchers, and extension professionals can trust the effectiveness of GeneMax Advantage genomic predictions in commercial Angus cattle.


2020 ◽  
Vol 98 (Supplement_3) ◽  
pp. 239-239
Author(s):  
Shane Newton ◽  
Payton Dahmer ◽  
Larry Corah ◽  
Keith Harmoney ◽  
John Jaeger ◽  
...  

Abstract Historic data supports the use of pre-weaning implants to maximize beef calf weaning weight, but their use has declined over the recent decade. A total of 96 beef steers (initially 85.2 kg BW and > 45 d of age) were used in a 168-d study to evaluate the effects of Synovex C® implantation during suckling on pre-weaning calf growth performance. At initial processing, calves were individually weighed and allotted in a completely randomized design to one of two treatments: 1) not implanted (control) or 2) implanted with 150 mg of trenbolone acetate and 21 mg of estradiol benzoate (SYNOVEX® ONE GRASS, Zoetis, Kalamazoo, MI). All calves were weighed on d 0 (implantation), 83, 126 and 168 (weaning), with ADG calculated for each period. Data were analyzed using the GLIMMIX procedure of SAS (v9.4, Cary, NC). There were 48 replicates per treatment, with grazing location as a random effect. While there were no detected differences in BW during the initial phases (P > 0.10), implanted calves tended to have greater (P = 0.100) greater weaning weight than non-implanted calves (279 vs. 265 kg, respectively). Calves implanted with SYNOVEX® ONE GRASS had 0.8, 0.12, and 0.16 kg/d greater (P < 0.05) ADG than those that were not implanted in all three phases. This resulted in an average of 0.10 kg/d greater (P = 0.002) ADG in implanted calves overall compared to the control. In conclusion, this research showed significant increases in suckling calf ADG in implanted calves compared to their non-implanted counterparts, which led to a tendency for 14-kg greater weaning weights. Additional research is warranted to consider the post-weaning growth and impact of re-implanting, but this data reinforces previous literature that suckling calf implantation continues to be cost effective for cow-calf producers.


2021 ◽  
pp. 17-22
Author(s):  
Afees Abiola Ajasa ◽  
Imre Füller ◽  
Barnabás Vágó ◽  
István Komlósi ◽  
János Posta

The aim of the current research was to estimate variance components and genetic parameters of weaning weight in Hungarian Simmental cattle. Weaning weight records were obtained from the Association of Hungarian Simmental Breeders. The dataset comprised of 44,278 animals born from 1975 to 2020. The data was analyzed using the restricted maximum likelihood methodology of the Wombat software. We fitted a total of six models to the weaning weight data of Hungarian Simmental cattle. Models ranged from a simple model with animals as the only random effect to a model that had maternal environmental effects as additional random effects as well as direct maternal genetic covariance. Fixed effects in the model comprised of herd, birth year, calving order and sex. Likelihood ratio test was used to determine the best fit model for the data. Results indicated that allowing for direct-maternal genetic covariance increases the direct and maternal effect dramatically. The best fit model had direct and maternal genetic effects as the only random effect with non-zero direct-maternal genetic correlation. Direct heritability, maternal heritability and direct maternal correlation of the best fit model was 0.57, 0.16 and -0.78 respectively. The result indicates that problem of (co-)sampling variation occurs when attempting to partition additive genetic variance into direct and maternal components.


2020 ◽  
Vol 52 (1) ◽  
Author(s):  
Harly J. Durbin ◽  
Duc Lu ◽  
Helen Yampara-Iquise ◽  
Stephen P. Miller ◽  
Jared E. Decker

Abstract Background Heat stress and fescue toxicosis caused by ingesting tall fescue infected with the endophytic fungus Epichloë coenophiala represent two of the most prevalent stressors to beef cattle in the United States and cost the beef industry millions of dollars each year. The rate at which a beef cow sheds her winter coat early in the summer is an indicator of adaptation to heat and an economically relevant trait in temperate or subtropical parts of the world. Furthermore, research suggests that early-summer hair shedding may reflect tolerance to fescue toxicosis, since vasoconstriction induced by fescue toxicosis limits the ability of an animal to shed its winter coat. Both heat stress and fescue toxicosis reduce profitability partly via indirect maternal effects on calf weaning weight. Here, we developed parameters for routine genetic evaluation of hair shedding score in American Angus cattle, and identified genomic loci associated with variation in hair shedding score via genome-wide association analysis (GWAA). Results Hair shedding score was moderately heritable (h2 = 0.34 to 0.40), with different repeatability estimates between cattle grazing versus not grazing endophyte-infected tall fescue. Our results suggest modestly negative genetic and phenotypic correlations between a dam’s hair shedding score (lower score is earlier shedding) and the weaning weight of her calf, which is one metric of performance. Together, these results indicate that economic gains can be made by using hair shedding score breeding values to select for heat-tolerant cattle. GWAA identified 176 variants significant at FDR < 0.05. Functional enrichment analyses using genes that were located within 50 kb of these variants identified pathways involved in keratin formation, prolactin signalling, host-virus interaction, and other biological processes. Conclusions This work contributes to a continuing trend in the development of genetic evaluations for environmental adaptation. Our results will aid beef cattle producers in selecting more sustainable and climate-adapted cattle, as well as enable the development of similar routine genetic evaluations in other breeds.


1978 ◽  
Vol 29 (2) ◽  
pp. 373
Author(s):  
R Barlow ◽  
EB Dettmann

Weaning weight (WW) and conformation score (CS) records on Angus calves from four New South Wales herds were analysed by least-squares procedures. Paternal half-sib components of variance and covariance were used to obtain estimates of heritabilities of various measures of growth and cs, as well as genetic, phenotypic and environmental correlations. Estimates of the heritabilities of measures of growth ranged from 0.20 (all data) to 0.24 when derived from heifer data only. The heritability of cs was 0.24 when the data were adjusted for ww, and 0.19 when no covariate was included in the analysis. All correlations among different measures of growth were positive and close to unity. There were small positive phenotypic and environmental correlations (0.19 to 0.36) and small negative genetic correlations between ww and cs (–0.02 to –0.41).


1998 ◽  
Vol 66 (2) ◽  
pp. 349-355 ◽  
Author(s):  
M. Diop ◽  
L. D. Van Vleck

AbstractEstimates of (co)variance components and genetic parameters were obtained for birth (no. = 3909), weaning (no. = 3425), yearling (no. = 2763), and final weight (no. = 2142) for Gobra cattle at the Centre de Recherches Zootechniques de Dahra (Senegal), using single trait animal models. Data were analysed by restricted maximum likelihood. Four different animal models were fitted for each trait. Model 1 considered the animal as the only random effect. Model 2 included in addition to the additive direct effect of the animal, the environmental effect due to the dam. Model 3 added the maternal additive genetic effects and allowed a covariance between the direct and maternal genetic effects. Model 4 fitted both maternal genetic and permanent environmental effects. Inclusion of both types of maternal effects (genetic and environmental) provided a better fit for birth and weaning weights than models with one maternal effect only. For yearling and final weights, the improvement was not significant. Important maternal effects werefound for all traits. Estimates of direct heritabilities were substantially higher when maternal effects were ignored. Estimates of direct and maternal heritabilities with model 4 were 0·07 (s.e. 0·03) and 0·04 (s.e. 0·02), 0·20 (s.e. 0·05) and 0·21 (s.e. 0.05), 0·24 (s.e. 0·07) and 0·21 (s.e. 0·06), and 0·14 (s.e. 0·06) and 0.16 (s.e. 0·06) for birth, weaning, yearling and final weights, respectively. Correlations between direct and maternal genetic effects were negative for all traits, and large for weaning and yearling weights with estimates of -0·61 (s.e. 0·33) and -0·50 (s.e. 0·31), respectively. There was a significant positive linear phenotypic trend for weaning and yearling weights. Linear trends for additive direct and maternal breeding values were not significant for any trait except maternal breeding value for yearling weight.


1988 ◽  
Vol 68 (1) ◽  
pp. 83-92 ◽  
Author(s):  
B. E. CUNNINGHAM ◽  
W. T. MAGEE

Two sets of preweaning records of calves were used to estimate breed-direct, breed-maternal, and nonadditive genetic effects. Three groups were represented in both sets of data: a straightbred Hereford line; a rotational crossbreeding line using Angus, Charolais, Hereford, and Simmental breeds; and a rotational crossbreeding line using Angus, Hereford, Holstein-Friesian, and Simmental breeds. Dataset 1 (DS1) consisted of calf records from 1972 to 1976 while dataset 2 (DS2) comprised records from 1978 to 1982. The breeds were the same in both datasets except the Simmental breed was not used in DS1. The traits studied in both DS1 and DS2 were birth weight (BWT), preweaning average daily gain (ADG), and weaning weight (WWT). Calving difficulty (CD) and percent assisted births (%AB) were studied in DS1. A multiple regression procedure was used to estimate breed-direct and breed-maternal effects, as well as average individual and maternal heterosis. Compared to the Hereford breed, breed-direct effects for BWT were negative while breed-maternal effects were positive for all breeds. Estimates of breed-direct and maternal effects for CD and %AB indicated that Simmental breeding would increase dystocia directly, but could decrease dystocia maternally. All breed-maternal effects for CD and %AB were negative compared to the Hereford breed. For ADG and WWT, breed-direct effects for Simmental, Charolais, and Holstein-Friesian were positive in DS2 but Charolais direct effects in DS1 were negative compared to Hereford. Estimates of average individual and maternal heterosis for the traits studied agreed with reported literature values except for weaning weight in DS2, where a large negative estimate (P < 0.10) for average WWT maternal heterosis was obtained. Key words: Beef cattle, crossbreeding, direct effects, maternal effects, heterosis


2021 ◽  
Vol 99 (Supplement_3) ◽  
pp. 240-241
Author(s):  
Hinayah R Oliveira ◽  
Stephen P Miller ◽  
Luiz F Brito ◽  
Flavio S Schenkel

Abstract The goals of this study were to develop a genetic evaluation system for a novel trait called functional heifer longevity (FHL), and determine if this novel trait is heritable. The FHL trait was defined as binary, in which the heifers received the code 1 if they had calved by the end of their third year (n = 377,938), or 0 if they were culled/sold during this period (n = 368,308). Analysis were performed using linear animal models and Bayesian inference. The significant systematic effects included in the statistical models are born by embryo transfer, year-season of birth, and age at calving (in months). Three models, differing according to their random effects (i.e., reduced model, which included only herd-year-season and additive genetic random effects; maternal genetic model, which added maternal genetic effects; and complete model, which further added maternal permanent environmental effects), were compared based on the deviance information criterion (DIC) and the estimates of genetic parameters. The reduced model was preferred according to the DIC values. However, high maternal heritabilities were estimated using the maternal genetic (0.51) and complete (0.36) models, indicating that maternal effects can impact the selection of heifers for breeding. Similar additive genetic heritabilities were estimated among the three models (0.24, 0.27, and 0.25 using the reduced, maternal genetic, and complete models, respectively), and no significant re-ranking of selection candidates were observed based on their additive genetic breeding values. Total heritabilities and correlations estimated between additive genetic and maternal genetic effects were 0.37 and -0.28 for the maternal genetic, and 0.31 and -0.27 for the complete model, respectively. This study shows that FHL is heritable, and that including maternal effects in the statistical models might be important. These results contribute to a larger project studying the genetics of female longevity in Angus cattle.


2021 ◽  
Vol 99 (Supplement_3) ◽  
pp. 274-275
Author(s):  
Afees Ajasa ◽  
Barnabás Vágó ◽  
Imre Füller ◽  
István Komlósi ◽  
János Posta

Abstract The aim of the study was to partition the total phenotypic variation in the weaning weight of Hungarian Simmental calves into their various causal components. The data used was provided by the Association of Hungarian Simmental Breeders. The dataset comprised of the weaning weight records of 44,278 calves (sire = 879, dam = 14,811) born from 1975 to 2020. A total of six models were fitted to the weaning weight data. Herd, birth year, calving order and sex were included as fixed effects in the models. Model 1 had direct genetic effect as the only random effect. Model 2 had a permanent maternal environment as an additional random effect. Model 3 had both direct and maternal genetic effects, with their covariance is being zero. Model 4 was similar to Model 3 but with non-zero direct-maternal genetic covariance. Model 5 had direct, maternal genetic and permanent environmental effects and a zero direct-maternal genetic covariance. Model 6 was similar to model 5 but the direct-maternal genetic effect was assumed to be correlated. Variance components and genetic parameters were estimated using restricted maximum likelihood method with the Wombat software. The best fit model was determined using the Log likelihood ratio test. Inclusion of direct maternal genetic covariance increased the variance components estimates dramatically which resulted in a corresponding increase in the direct and maternal heritability estimates. The best fitted model (Model 4) had direct and maternal genetic effects as the only random effects with a non-zero direct-maternal genetic covariance. The direct heritability, maternal heritability and direct-maternal genetic correlation estimate of the best model was 0.57, 0.16 and -0.78, respectively. Our result suggests the problem of (co)sampling variation in the partitioning of additive genetic effect into direct and maternal components.


2021 ◽  
Vol 99 (Supplement_1) ◽  
pp. 135-136
Author(s):  
Jenny R Morris ◽  
Michael Ellis ◽  
Caleb M Shull

Abstract This study evaluated the effect of housing newly-weaned pigs in uniform versus mixed weight groups on nursery growth performance (5.9 ± 1.1 to 26.2 ± 2.9 kg BW). Pigs were assigned to a weaning weight (WW) quartile: Q1 (light; 4.2 ± 0.1 kg), Q2 (medium-light; 5.5 ± 0.1 kg), Q3 (medium-heavy; 6.3 ± 0.2 kg), and Q4 (heavy; 7.5 ± 0.1 kg). A RCBD was used (blocking factor = start date) with 5 treatments: Control (equal number of pigs from each quartile); Uniform Q1 (all pigs from Q1); Uniform Q2 (all pigs from Q2); Uniform Q3 (all pigs from Q3); Uniform Q4 (all pigs from Q4). There were 16 replicates and 3,503 pigs, with mixed-gender pens of 44. Pen was the experimental unit; data were analyzed using PROC MIXED of SAS (fixed effect = treatment; random effect = replicate). Overall ADG and ADFI increased (P &lt; 0.05) according to WW quartile for the Uniform treatments, with the Control being intermediate. There were no differences (P &gt; 0.05) between treatments for Overall G:F. A contrast statement was used to compare Control to the mean of all 4 Uniform treatments. Compared to Control, the mean of the 4 Uniform treatments had similar (P &gt; 0.05) overall ADG (0.44 vs. 0.44 kg, respectively) and ADFI (0.72 vs. 0.68 kg, respectively), but greater (P &lt; 0.05) overall G:F (0.637 vs. 0.611, respectively). Comparison of pigs from each quartile within Control pens with the respective quartile in Uniform pens suggested no effect (P &gt; 0.05) of weight quartile on ADG (respective means for Control vs Uniform: Q1 0.34 vs. 0.36 kg; Q2 0.39 vs. 0.40 kg; Q3 0.42 vs. 0.42 kg; Q4 0.47 vs. 0.45 kg). These results suggest that penning nursery pigs in uniform versus mixed weight groups had limited effect on growth performance.


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