Genetic-Quantitative Uni- and Bi-Trait Analysis for Growth Traits in the Colombian Creole Breed Blanco Orejinegro (BON)

The Blanco Orejinegro (BON) is a Colombian creole cattle breed that is not genetically well characterized for growth traits. The aim of this work was to estimate genetic parameters for birth weight (BW), weaning weight (WW), yearling weight (YW), daily weight gain between birth and weaning (DWG), time to reach 120 kg of live weight (T120), and time to reach 60% of adult weight (T60%), and establish the selection criteria for growth traits in the BON population of Colombia. Genealogical and phenotypic information for BW, WW, YW, DWG, T120, and T60% traits of BON animals from 14 Colombian herds were used. These traits were analyzed with the AIREML method in a uni- and bi-trait animal model including the maternal effect for BW, WW, DWG, and T120. The direct heritability estimates values were 0.22 ± 0.059 (BW), 0.20 ± 0.057 (WW), 0.20 ± 0.153 (YW), 0.17 ± 0.07 (DWG), 0.26 (T120), and 0.44 ± 0.03 (T60%). The maternal heritability estimates values were 0.14 ± 0.040 (BW), 0.15 ± 0.039 (WW), 0.25 ± 0.06 (DWG), and 0.16 (T120). The direct genetic correlations were high (>|0.60|) among all the traits, except between T60% with BW, WW, YW, and DWG (ranged from -0.02 to -0.51), all in a favorable direction. The results showed that there is genetic variation in the growth traits associated with the additive genetic effect and they might respond to selection processes. Furthermore, genetic gains would improve through selection, especially for YW and T60% when WW is used as criterion.

PSXI-9 Heterotic and breed effects in crossbred lambs

Given its benefits on animal performance, crossbreeding is common commercially. Genetic evaluation of sheep in the U.S. is performed within breed type (terminal, maternal wool, range, hair). While incorporating crossbred records may improve assessment of purebreds, it requires accounting for heterotic and breed effects in the evaluation. The objectives were to i) determine the generalized effects of direct and maternal heterosis on growth traits of crossbred lambs, and ii) estimate covariance components for direct and maternal additive, and uncorrelated maternal environmental, effects among those traits. Data included body weights (BW) at birth (BN; n = 14395), pre-weaning (WN; n = 9298), weaning (WW; n = 9230), and post-weaning (PW; n = 1593). Mean (SD) BW were 5.3 (1.1), 22.2 (8.7), 39.1 (7.2), and 54.2 (8.7) kg for BN, WN, WW, and PW, respectively. Estimates of heterotic effects and covariance components were obtained using a multiple trait animal model. Genetic effects based on founders’ breeds were included, being significant. Estimates of direct heterosis were 3.04 ± 0.61, 2.62 ± 0.64, 3.99 ± 0.54, and 5.97 ± 0.86%, and estimates of maternal heterosis were 1.86 ± 0.87, 4.42 ± 0.79, 3.69 ± 0.66, and 3.77 ± 0.90%, for BN, WN, WW, and PW, respectively. Direct heritability estimates were 0.17 ± 0.02, 0.13 ± 0.02, 0.18 ± 0.02, and 0.47 ± 0.04 for BN, WN, WW, and PW, respectively. Additive maternal effects defined trivial variation in PW. For BN, WN, and WW, respectively, maternal heritability estimates were 0.17 ± 0.02, 0.10 ± 0.02, and 0.07 ± 0.02. Uncorrelated maternal effects defined little variation in any trait. Direct and maternal heterosis had considerable impact on growth traits, emphasizing the value of crossbreeding and the need to account for heterosis, in addition to breed effects, if crossbred lamb information is included in genetic evaluation.

PSI-17 Genetic analysis of weaning weight in Hungarian Simmental cattle

The aim of the study was to partition the total phenotypic variation in the weaning weight of Hungarian Simmental calves into their various causal components. The data used was provided by the Association of Hungarian Simmental Breeders. The dataset comprised of the weaning weight records of 44,278 calves (sire = 879, dam = 14,811) born from 1975 to 2020. A total of six models were fitted to the weaning weight data. Herd, birth year, calving order and sex were included as fixed effects in the models. Model 1 had direct genetic effect as the only random effect. Model 2 had a permanent maternal environment as an additional random effect. Model 3 had both direct and maternal genetic effects, with their covariance is being zero. Model 4 was similar to Model 3 but with non-zero direct-maternal genetic covariance. Model 5 had direct, maternal genetic and permanent environmental effects and a zero direct-maternal genetic covariance. Model 6 was similar to model 5 but the direct-maternal genetic effect was assumed to be correlated. Variance components and genetic parameters were estimated using restricted maximum likelihood method with the Wombat software. The best fit model was determined using the Log likelihood ratio test. Inclusion of direct maternal genetic covariance increased the variance components estimates dramatically which resulted in a corresponding increase in the direct and maternal heritability estimates. The best fitted model (Model 4) had direct and maternal genetic effects as the only random effects with a non-zero direct-maternal genetic covariance. The direct heritability, maternal heritability and direct-maternal genetic correlation estimate of the best model was 0.57, 0.16 and -0.78, respectively. Our result suggests the problem of (co)sampling variation in the partitioning of additive genetic effect into direct and maternal components.

Genetic parameters of gestation length trait in dromedary camels (Camelus dromedarius)

Gestation length (GL) data of dromedary camels were analysed for the period from 2007 to 2018. The database of the largest dairy camel herds (Dubai, United Arab Emirates) was used in this study. The data of 4,084 camels included in the assessment were classified into six ecotypes (Emirati, Emirati cross, Black, Pakistani, Saudi-Sudanese and Saudi cross). The aim of the study was to describe the heritability of GL of camels and the breeding value (BV) of sires for this trait. The genetic parameters of GL were estimated by the General Linear Model method and two Best Linear Unbiased Prediction (BLUP) animal models as well. The mean (±SE) of GL of camels was 384.3 ± 0.2 days. The direct heritability of GL (0.26 ± 0.06–0.36 ± 0.08) was higher than the maternal heritability (0.00 ± 0.05–0.13 ± 0.06) obtained. The maternal permanent environmental effect (0.15 ± 0.05) was similar to the results estimated previously in dromedary camel, but higher than the data reported by relevant sources in other species. Based on the results of this study it can be concluded that the GL of dromedary camels is a species-specific value similar to that in cattle, which is less affected by the maternal influence. Considerable differences (16 days) exist among male dromedaries in their BV for the GL trait.

Breeding for the Main Agricultural Farming of Arabica Coffee

So far, the main Arabica coffee breeding programmes in Latin America have focused on the selection of varieties adapted to intensive full-sun farming systems. Meanwhile, little attention has been paid to breeding varieties specifically adapted to shade, which is the main characteristic of agroforestry systems (AFS). Yet the specialty coffee sector is currently expanding and seeking specific sensory qualities related to exotic varieties and no breeding programme exists to create new varieties for this type of market. Two trials were set up: one in full sun and the other under shade. F1 hybrids and their parents (pure lines and Ethiopian accessions) were studied in a factorial-crossing design to measure tree volume, yield (3 years), bean size, the bean NIRS signature and the final cupping score. Bean size and the final cupping score seemed to be relatively unaffected by shading. Strong maternal heritability was observed for bean size. In the trials, F1 hybrids produced “75–80%” more than the maternal lines and “40–50%” more than the male parents in the shade trial and in the full-sun trial, respectively. By choosing the F1 hybrid, it is possible to increase productivity under both shade and full sun while simultaneously achieving good sensory qualities. Selecting a F1 hybrid for “specialty coffee” seems exceptional. This raises a fundamental issue concerning the maternal heritability of seed biochemical composition. We conclude that selection under shade is essential for the selection of varieties adapted to AFS.

ESTIMATE OF GENETIC COMPONENTS OF BIRTH WEIGHT USING MULTI-BREED MODELS WITH DIFFERENT PEDIGREE STRUCTURES IN MESTIZO SHEEP

The objectives of this paper were to verify the influence of the multi-breed model and pedigree structure in the estimates of the genetic components to birth weight in a mestizo herd. Using 1234 birth weight records in two ways, one dataset with complete pedigree information (n = 1028) and another with incomplete pedigree information (n = 1234). The pedigree was composed for 10 sires, 366 and 448 dams for complete and incomplete pedigree, respectively. Used for analysis the maximum restricted likelihood method about the animal model, considering the birth weight trait, for a dataset with or not complete pedigree, used the WOMBAT program. The direct heritability coefficients in both datasets did not present large difference, 0.06 and 0.09 to best models in the complete and incomplete pedigree, respectively. However, in the incomplete pedigree, the maternal heritability was 0.29. The residual variance, which on the best model of the dataset with complete pedigree presented 0.51 and 0.35 for the best model of the dataset with incomplete pedigree. Concluding, we find the influence of de multi-breed model only in the dataset with complete pedigree, that considered the direct and breed effects. In the dataset with incomplete pedigree, the better model was that considered the direct and maternal additive effects.

Relationship between direct and maternal genetic effects on weaning weight of Limousin and crossbred beef calves

Population genetic parameters, direct and maternal breeding value, the genetic trend in the weaning weight of Limousin beef cattle calves were estimated in the period 1992–2019. Data of 19 764 calves (15 437 purebred Limousin and 4 327 crossbred) were computed. Crossbred calves were sired by Limousin breeding bulls from Simmental dams. Calves in question came from 37 herds and from 240 sires in Hungary. DFREML and MTDFREML software was used for the estimation of population genetic parameters, BLUP animal model for breeding value estimation. Weighted linear regression model was used for describing genetic trends. The maternal heritability (h²_m ± SE = 0.29 ± 0.03; 0.32 ± 0.10) was approximately half of the direct heritability (h²_d ± SE = 0.63 ± 0.05; 0.68 ± 0.12). The direct maternal covariance is negative, the direct maternal genetic correlation coefficients (r_dm ± SE = –0.80 ± 0.03 and –0.96 ± 0.07) are strong negative. The Spearman rank correlation between direct and maternal breeding value in purebred population is moderate and negative (r_rank = –0.33; P < 0.01), in crossbred population it is strong and negative (r_rank = –0.99; P < 0.01). According to direct and maternal breeding values of sires, the genetic trend of the weaning weight of purebred and crossbred Limousin calves appeared stagnant during the examined period (b = +0.01 kg/year to +0.19 kg/year). Keywords: d

Random regression models for the evaluation of the growth of goats of the Anglonubian breed

ABSTRACT A total of 6593 weight records collected from 796 male and female Anglo-Nubian goats aged up to 130 days, offspring from 29 sires and 225 dams, were used to compare models and estimate genetic parameters throughout the growth curve by applying random regression models. Direct and maternal additive genetic effects and direct and maternal permanent environmental effects were included as random in the models. The contemporary groups were included as fixed effects and goat age at kidding was included as a covariable (linear and quadratic). The choice of the best model was based on the AIC, BIC and AICc criteria. Variance estimates of the four random effects increased as the animals aged. Direct heritability (h2) rose from 0.13 to 0.40 with age, whereas maternal heritability showed a low value. Genetic correlations of weight between closer ages were high. The most suitable random regression model to compare the fitting of random effects was that which employed the Legendre polynomials of quadratic order with homogeneous variance (3333-1).

Effectiveness of Genetic Parameter Estimation in a Small Flock of Merino Sheep with Shallow Pedigree

In this study, the genetic and non-genetic parameters were estimated for growth traits of Karacabey merino sheep. Growth performance data refer to 1863 lambs born between 2016 and 2018. Analyses were carried out by restricted maximum likelihood fitting animal models and disregarding or including maternal genetic or maternal permanent environmental effect. Six different animal model were fitted for all traits, and the most suitable model for each trait was chosen after Akaike information criterion test (AIC). Year of birth, age of dam, type of birth and lamb sex were significant sources of variation on birth weight (BW), average daily gain (ADG), Kleiber ratio (KR), weaning weight (WW) and six month weight (6MW). Direct heritability (h^2) for BW, ADG and 6MW were 0.12, 0.02 and 0.04, respectively, however, for KR and WW were 0.00 model 6 (which the best). The estimates of maternal heritability (m^2) for ADG, KR and WW were 0.12, 0.04 and 0.04, respectively in model 5, also maternal heritability were low for BW and 6MW. Maternal permanent environmental effects (c^2) have high contribution to the explanation growth traits and were estimated between 0.19 and 0.75 for these traits. These results showed that selecting for improved maternal and/or direct effects for Karacabey merino in the herd would generate very slow genetic improvement in growth traits.

Direct and Maternal Genetic Trends for Some Productive and Reproductive Traits in Egyptian Buffaloes

This study was done to determine the direct and maternal genetic and phenotypic trends for productive traits such as first lactation milk yield (FLMY, kg), first lactation period (FLP, d) and first lactation daily milk (FLDM, kg), and reproductive traits such as age at first calving (AFC, mo), First days open (FDO, d) and first calving interval (FCI, d). Data were collected over consecutive 25 years (1991 to 2015) of 1104 first lactation of 135 sires and 482 dams maintained at Mahallet Mousa farms of Animal Production Research Institute. Data were analyzed by Animal model to determine genetic parameters for studied traits. Means of FLMY, FLP, FLDM, AFC, FDO and FCI were 1546.5kg, 189d, 7.9kg, 37.9mo, 120.8d and 428d, respectively. The direct heritability (h2a) for same traits were 0.25, 0.18, 0.24, 0.45, 0.18 and 0.19, respectively. Corresponding maternal heritability (h2m) for mentioned traits was 0.12, 0.19, 0.22, 0.25, 0.12 and 0.12, respectively. Genetic correlations (rg) among studied traits were varied between -0.19 to 0.38. Accuracy of predicted breeding value varied between 69 to 94, 0.37 to 94 and 42 to 91% for FLMY, FLP, FLDM, AFC, FDO and FCI of sires, cows and dams, respectively that revealed the genetic improvement could be actualized through each of cows or sires or dams. Additive and maternal genetic, permanent environmental and phenotypic trends were not significant for all studied traits. It indicated that it is important to set up a plan to improve genetic and environmental conditions thus, increasing productivity and realization of high profitability.