Genetic polymorphism in Proteocephalus exiguus shown by enzyme electrophoresis

1996 ◽  
Vol 70 (4) ◽  
pp. 345-349 ◽  
Author(s):  
V. Šnábel ◽  
V. Hanzelová ◽  
S. Mattiucci ◽  
S. D'Amelio ◽  
L. Paggi

AbstractEnzyme electrophoresis has been used to examine genetic diversity in a population of Proteocephalus exiguus La Rue, 1911 (Cestoda: Proteocephalidae), parasitizing salmonid and coregonid fishes. Among 16 loci tested, three polymorphic loci (Ada, Got, Pgm-2) were found. Six different genotypes at the Got locus distributed in Hardy-Weinberg equilibrium suggest remarkable genetic flexibility of P. exiguus. Balancing selection is proposed as the mechanism maintaining genetic variation within the species. Data of genetic variability parameters (Ho = 0.064; He = 0.07; P = 0.19) and outcrossing rate (t = 0.842) of P. exiguus population have been provided. Possible factors affecting these data are discussed.

AoB Plants ◽  
2019 ◽  
Vol 11 (4) ◽  
Author(s):  
Alice Backes ◽  
Geraldo Mäder ◽  
Caroline Turchetto ◽  
Ana Lúcia Segatto ◽  
Jeferson N Fregonezi ◽  
...  

Abstract Different genetic patterns have been demonstrated for narrowly distributed taxa, many of them linking rarity to evolutionary history. Quite a few species in young genera are endemics and have several populations that present low variability, sometimes attributed to geographical isolation or dispersion processes. Assessing the genetic diversity and structure of such species may be important for protecting them and understanding their diversification history. In this study, we used microsatellite markers and plastid sequences to characterize the levels of genetic variation and population structure of two endemic and restricted species that grow in isolated areas on the margin of the distribution of their respective genera. Plastid and nuclear diversities were very low and weakly structured in their populations. Evolutionary scenarios for both species are compatible with open-field expansions during the Pleistocene interglacial periods and genetic variability supports founder effects to explain diversification. At present, both species are suffering from habitat loss and changes in the environment can lead these species towards extinction.


1994 ◽  
Vol 1 (1) ◽  
pp. 46 ◽  
Author(s):  
Richard Southgate ◽  
Mark Adams

The taxonomic status of and genetic diversity amongst extant populations of the greater bilby, Macrotis lagotis, were assessed using allozyme electrophoresis. A total of 47 bilbies sampled from three geographic areas and two captive colonies were screened for 42 loci, six of which were polymorphic. The results are consistent with the view that all extant populations represent a single biological species. All populations were genetically very similar (Nei D's 0.000 to 0.004) and overall levels of within-population genetic variability were low (Ho 0.004 � 0.004 to 0.0026 � 0.017). The allozyme data support the hypothesis that there has been no significant loss of variability in the captive colonies when compared to the species as a whole.


eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Daniel Koenig ◽  
Jörg Hagmann ◽  
Rachel Li ◽  
Felix Bemm ◽  
Tanja Slotte ◽  
...  

Genetic drift is expected to remove polymorphism from populations over long periods of time, with the rate of polymorphism loss being accelerated when species experience strong reductions in population size. Adaptive forces that maintain genetic variation in populations, or balancing selection, might counteract this process. To understand the extent to which natural selection can drive the retention of genetic diversity, we document genomic variability after two parallel species-wide bottlenecks in the genus Capsella. We find that ancestral variation preferentially persists at immunity related loci, and that the same collection of alleles has been maintained in different lineages that have been separated for several million years. By reconstructing the evolution of the disease-related locus MLO2b, we find that divergence between ancient haplotypes can be obscured by referenced based re-sequencing methods, and that trans-specific alleles can encode substantially diverged protein sequences. Our data point to long-term balancing selection as an important factor shaping the genetics of immune systems in plants and as the predominant driver of genomic variability after a population bottleneck.


2004 ◽  
Vol 52 (3) ◽  
pp. 259-265
Author(s):  
Daniela Šátková-Jakabová ◽  
J. Trandžík ◽  
Ľudmila Hudecová-Kvasňáková ◽  
Erika Hegedüšová-Zetochová ◽  
A. Bugarský ◽  
...  

Genetic variation at six microsatellite loci was analysed for five Thoroughbred subpopulations to determine the magnitude of genetic differentiation and the genetic relationships among the subpopulations. Significant deviations from Hardy-Weinberg equilibrium were shown for a number of locus-population combinations, with all subpopulations. The genetic diversities and relationships of five Thoroughbred subpopulations were evaluated using six microsatellites recommended by the International Society of Animal Genetics (ISAG). The allele frequencies, the effective numbers of alleles, and the observed and expected heterozygosities were calculated. POPGENE v. 1.31 (Yeh et al., 1997) was used to test for deviations from the Hardy-Weinberg (H-W) equilibrium and to assign FIS estimates (Weir, 1990). The utility of microsatellites for evaluating genetic diversity of horses is discussed.


2005 ◽  
Vol 48 (4) ◽  
pp. 511-521 ◽  
Author(s):  
Leandro Eugênio Cardamoni Diniz ◽  
Claudete de Fátima Ruas ◽  
Valdemar de Paula Carvalho ◽  
Fabrício Medeiros Torres ◽  
Eduardo Augusto Ruas ◽  
...  

The genetic variability of 40 accessions of_C. arabica was evaluated using a combination of the random amplified polymorphic DNA (RAPD) technique and restriction digestion of genomic DNA. The genetic variability and the relatedness among all accessions were initially evaluated using 195 RAPD primers which revealed a very low level of genetic variation. To improve the efficiency in the detection of polymorphism, the genomic DNA of all accessions were submitted to digestion with restriction endonucleases prior to PCR amplification. A total of 24 primers combined with restriction digestion of DNA rendered 318 bands, of which 266 (83.65%) were polymorphic. The associations among genotypes were estimated using UPGMA-clustering analysis. The accessions were properly clustered according to pedigree and agronomic features. The ability to distinguish among coffee accessions was greater for RAPD plus restriction digestion than for RAPD alone, providing evidences that the combination of the techniques was very efficient for the estimation of genetic relationship among_C. arabica genotypes.


2013 ◽  
Vol 13 (1) ◽  
pp. 67-74 ◽  
Author(s):  
Claudia Teresa Hornung-Leoni ◽  
Victoria Sosa ◽  
June Simpson ◽  
Katia Gil

Puya raimondii, the giant Peruvian and Bolivian terrestrial bromeliad, is an emblematic endemic Andean species well represented in Huascarán National Park in Peru. This park is the largest reserve of puna (high altitude plateau) vegetation. The objective of this study is to report on genetic variation in populations of P. raimondii from Huascarán and neighboring areas. AFLP profiles with four selective primer combinations were retrieved for 60 individuals from different zones. Genetic variability was estimated and a total of 172 bands were detected, of which 79.1% were polymorphic loci. The results showed genetic differentiation among populations, and gene flow. A cluster analysis showed that individuals of P. raimondii populations located in different mountain systems could be grouped together, suggesting long distance dispersal. Thus, conservation strategies for P. raimondii have to take into account exchange between populations located far apart in distance in order to preserve the genetic diversity of this showy species.


2009 ◽  
Vol 2009 ◽  
pp. 1-8 ◽  
Author(s):  
Christine Ouinsavi ◽  
Nestor Sokpon ◽  
Damase P. Khasa

To accurately estimate the genetic diversity and population structure for improved conservation planning ofMilicia excelsatree, 212 individuals from twelve population samples covering the species' range in Benin were surveyed at seven specific microsatellite DNA loci. All loci were variable, with the mean number of alleles per locus ranging from 5.86 to 7.69. Considerable genetic variability was detected for all populations at the seven loci (AR=4.60;HE=0.811). Moderate but statistically significant genetic differentiation was found among populations considering bothFST(0.112) andRST(0.342). All of the populations showed heterozygosity deficits in test of Hardy-Weinberg Equilibrium and significantly positiveFISvalues due to inbreeding occurring in the species. PairwiseFSTvalues were positively and significantly correlated with geographical distances (r=0.432;P=.007, Mantel's test) indicating that populations are differentiated by “isolation by distance.” Bayesian analysis of population structure showed division of the genetic variation into four clusters revealing the existence of heterogeneity in population genetic structure. Altogether, these results indicate that genetic variation inMilicia excelsais geographically structured. Information gained from this study also emphasized the need for in situ conservation of the relict populations and establishment of gene flow corridors through agroforestry systems for interconnecting these remnant populations.


2021 ◽  
Author(s):  
◽  
Daniel Cárcamo

<p>Genetic information is important to inform management and conservation. However, few studies have tested the relationship between genetic variation and geospatial/environmental variation across marine species. Here, I test two genetics-based ideas in evolutionary theory using data from 55 New Zealand coastal marine taxa. The Core-Periphery Hypothesis (CPH) states that populations at the centre of a species’ distribution exhibit greater genetic variability than populations at the periphery (the ‘normal’ model). Variants of this model include the ‘ramped north’ (greatest variation in the north), the ‘ramped south’ (greatest variation in the south), and the ‘abundant edge’ (greatest variation at the distributional edges, least variation at the centre). The Seascape Genetics Test (SGT) null hypothesis predicts no association between genetic variation and environmental variation. I conducted a meta-analysis of published/unpublished material on population genetic connectivity and diversity and marine environmental data to test both hypotheses. To assess the CPH, genetic data were fitted to four models (Normal, Ramped North, Ramped South, Abundant Edge). I also conducted a descriptive analysis between the genetic outcomes of the CPH and abundance records for a subset of species. The SGT involved GLM analyses using eleven geospatial/environmental variables and species-specific FST-ΦST (genetic distance) estimates plus a smaller subset of genetic diversity data. The CPH results showed that 55 of 249 tests (evaluating on average 2.9 ± 1.3 genetic indices in each of the 84 studies) fitted at least one of the four models: Ramped North (10%), Ramped South (8%), Normal (2%) and Abundant Edge (2.4%). Species-specific abundance records followed the same patterns detected by the CPH. These results indicate that edge populations (Ramped North, Ramped South, Abundant Edge) exhibit greater genetic variability than central populations amongst marine taxa from New Zealand, but that most taxa do not conform to any model (~78% of all tests were not statistically significant). For the seascape genetics multi-species analysis (comprising 498 individual tests), the FST-ΦST estimates (genetic distance estimates between pairs of populations) were mostly affected by four factors related to sea surface temperature. For genetic diversity indices the most significant predictors were latitude and longitude. Whilst different factors (e.g., physical oceanography, food availability, life-history traits and harvesting), either acting alone or acting synergistically, are likely to be important in explaining patterns of genetic diversity in New Zealand’s marine coastal species, my results indicate that variables including SST and to a lesser extent the geospatial variables (latitude and longitude) explain much of the variation in the genetic indices tested here.</p>


2005 ◽  
Vol 48 (2) ◽  
pp. 171-180 ◽  
Author(s):  
José Marcelo Domingues Torezan ◽  
Rogério Fernandes de Souza ◽  
Paulo Maurício Ruas ◽  
Claudete de Fátima Ruas ◽  
Elvis Hassmann Camargo ◽  
...  

RAPD was used to access the genetic variability in Aspisdosperma polyneuron, a long-lived, late-reproducing tropical tree, and highly important for the Atlantic Forest. RAPD profiles from adults (pre-fragmentation, >300 years old) and seedlings (post-fragmentation, <<50 years old) were analyzed. Results showed a decrease of genetic polymorphism of post-fragmentation cohorts in small fragments and higher genetic diversity within population. The genetic diversity distribution suggested the establishment of fragments as protected reserves, and the transference of seedlings among fragments for conservation of A. polyneuron.


2011 ◽  
Vol 91 (8) ◽  
pp. 1599-1606 ◽  
Author(s):  
Aicha Gharbi ◽  
Khaled Said

Seven populations of Holothuria polii were sampled from the eastern and western Mediterranean coastal waters of Tunisia and screened electrophoretically for genetic variation at 11 allozyme loci. Six among the seven polymorphic loci were out of Hardy–Weinberg equilibrium (HWE) in at least one population. In the same way, the multilocus test showed deviation from HWE in all populations. These populations showed heterozygote deficiency. Genetic variability was relatively low. The number of alleles per locus ranged from 2.09 to 2.27 (average = 2.15), and the observed heterozygosity varied between 0.14 and 0.20 (average = 0.17). The observed overall differentiation among populations was slight but significant, with a mean FST value of 0.024 (P < 0.001). Pairwise FST values reflected the differentiation of the two populations, which were at the margins of the range sampled, from all the others. Our data suggest a population structure consistent with separation by Mediterranean Sea basins that might reflect different local biogeographical zones.


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