scholarly journals Virus isolation studies suggest short-term variations in abundance in natural cyanophage populations of the Indian Ocean

Author(s):  
Martha R.J. Clokie ◽  
Andrew D. Millard ◽  
Jaytry Y. Mehta ◽  
Nicholas H. Mann

Cyanophage abundance has been shown to fluctuate over long timescales and with depth, but little is known about how it varies over short timescales. Previous short-term studies have relied on counting total virus numbers and therefore the phages which infect cyanobacteria cannot be distinguished from the total count.In this study, an isolation-based approach was used to determine cyanophage abundance from water samples collected over a depth profile for a 24 h period from the Indian Ocean. Samples were used to infect Synechococcus sp. WH7803 and the number of plaque forming units (pfu) at each time point and depth were counted. At 10 m phage numbers were similar for most time-points, but there was a distinct peak in abundance at 0100 hours. Phage numbers were lower at 25 m and 50 m and did not show such strong temporal variation. No phages were found below this depth. Therefore, we conclude that only the abundance of phages in surface waters showed a clear temporal pattern over a short timescale. Fifty phages from a range of depths and time points were isolated and purified. The molecular diversity of these phages was estimated using a section of the phage-encoded psbD gene and the results from a phylogenetic analysis do not suggest that phages from the deeper waters form a distinct subgroup.

1969 ◽  
Vol 20 (1) ◽  
pp. 1 ◽  
Author(s):  
DJ Rochford

Tropical and subtropical water masses at surface and subsurface depths were separated by their salinity, temperature, oxygen, and nutrient characteristics. The annual mean depths and latitudinal extent of these water masses were determined. Annual changes in the upper 50 m were generally so small relative to those found in other oceans that advection and mixing must have been less important in their genesis than local climatic changes. There was a barely significant seasonal rhythm in surface phosphate and nitrate, with peak occurrences of each some 6 months apart. At each latitude the permanent thermal discontinuity centred around a particular isotherm varied little in intensity during the year, but rose and fell in accordance with surface currents. The thermocline south of c. 18�S. varied little in depth but greatly in intensity during the summer. The depth of the mixed layer was much less in summer and at all times shallower in the tropics. The depth of this layer was governed more by the accumulation of surface waters by zonal currents and eddies, than by wind stress or convective overturn. Therefore there was little difference from south to north, or month to month, in average nutrient values of this mixed column. The movement of the various surface waters, deduced from salinity and temperature changes during the year, usually agrees with geostrophic currents across 110�E, and ships' observations of surface currents in the south-east Indian Ocean.


2019 ◽  
Vol 11 (12) ◽  
pp. 1491 ◽  
Author(s):  
Naokazu Taniguchi ◽  
Shinichiro Kida ◽  
Yuji Sakuno ◽  
Hidemi Mutsuda ◽  
Fadli Syamsudin

Spatial and temporal information on oceanic flow is fundamental to oceanography and crucial for marine-related social activities. This study attempts to describe the short-term surface flow variation in the area south of the Lombok Strait in the northern summer using the hourly Himawari-8 sea surface temperature (SST). Although the uncertainty of this temperature is relatively high (about 0.6 ∘ C), it could be used to discuss the flow variation with high spatial resolution because sufficient SST differences are found between the areas north and south of the strait. The maximum cross-correlation (MCC) method is used to estimate the surface velocity. The Himawari-8 SST clearly shows Flores Sea water intruding into the Indian Ocean with the high-SST water forming a warm thermal plume on a tidal cycle. This thermal plume flows southward at a speed of about 2 m / s . The Himawari-8 SST indicates a southward flow from the Lombok Strait to the Indian Ocean, which blocks the South Java Current flowing eastward along the southern coast of Nusa Tenggara. Although the satellite data is limited to the surface, we found it useful for understanding the spatial and temporal variations in the surface flow field.


2006 ◽  
Vol 53 (9) ◽  
pp. 1517-1532 ◽  
Author(s):  
C. Misic ◽  
M. Castellano ◽  
M. Fabiano ◽  
N. Ruggieri ◽  
V. Saggiomo ◽  
...  

2020 ◽  
Author(s):  
Dehan Liu ◽  
Wanshu Zhang ◽  
Feng Pan ◽  
Lin Li ◽  
Lian Yang ◽  
...  

Abstract Background: A cluster of patients with coronavirus disease 2019 (COVID-19) pneumonia were discharged from hospitals in Wuhan, China. We aimed to determine the cumulative percentage of complete radiological resolution at each time point, to explore the relevant affecting factors, and to describe the chest CT findings at different time points after hospital discharge.Methods: Patients with COVID-19 pneumonia confirmed by RT-PCR who were discharged consecutively from the hospital between 5 February 2020 and 10 March 2020 and who underwent serial chest CT scans on schedule were enrolled. The radiological characteristics of all patients were collected and analysed. The total CT score was the sum of non-GGO involvement determined at discharge. Afterwards, all patients underwent chest CT scans during the 1st, 2nd, and 3rd weeks after discharge. Imaging features and distributions were analysed across different time points.Results: A total of 149 patients who completed all CT scans were evaluated; there were 67 (45.0%) men and 82 (55.0%) women, with a median age of 43 years old (IQR 36-56). The cumulative percentage of complete radiological resolution was 8.1% (12 patients), 41.6% (62), 50.3% (75), and 53% (79) at discharge and during the 1st, 2nd, and 3rd weeks after discharge, respectively. Patients ≤44 years old showed a significantly higher cumulative percentage of complete radiological resolution than patients >44 years old at the 3-week follow-up. The predominant patterns of abnormalities observed at discharge were ground-glass opacity (GGO) (65 [43.6%]), fibrous stripe (45 [30.2%]), and thickening of the adjacent pleura (16 [10.7%]). Lung lesions showed obvious resolution from 2 to 3 weeks after discharge, especially in terms of GGO and fibrous stripe. “Tinted” sign and bronchovascular bundle distortion as two special features were discovered during the evolution.Conclusion: Lung lesions in COVID-19 pneumonia patients can be absorbed completely during short-term follow-up with no sequelae. Three weeks after discharge might be the optimal time point for early radiological estimation.


Radiocarbon ◽  
2004 ◽  
Vol 46 (2) ◽  
pp. 603-610 ◽  
Author(s):  
Quan Hua ◽  
Colin D Woodroffe ◽  
Mike Barbetti ◽  
Scott G Smithers ◽  
Ugo Zoppi ◽  
...  

Known-age corals from the Cocos (Keeling) Islands, Indian Ocean, have been analyzed by accelerator mass spectrometry (AMS) for radiocarbon to determine marine reservoir age corrections. The ΔR value for the Cocos (Keeling) Islands is 66 ± 12 yr based on the analyses undertaken for this study. When our AMS and previously published dates for Cocos are averaged, they yield a ΔR of 64 ± 15 yr. This is a significant revision of an earlier estimate of the ΔR value for the Cocos (Keeling) Islands of 186 ± 66 yr (Toggweiler et al. 1991). The (revised) lower ΔR for the Cocos (Keeling) Islands is consistent with GEOSECS 14C data for the Indian Ocean, and previously published bomb 14C data for the Red Sea, Gulf of Aden, and Cocos Islands. The revised ΔR is also close to values for the eastern Indian Ocean and adjacent seas. These suggest surface waters that reach the Cocos Islands might be partly derived from the far western Pacific, via the Indonesian throughflow, and might not be influenced by the southeast flow from the Arabian Sea.


2017 ◽  
Vol 1 (1) ◽  
Author(s):  
Xingrong Chen ◽  
Yi Cai ◽  
Fangli Qiao

 The physical decomposition method suggested by Qian (2012) is used to examine the interannual variability of sea surface temperature (SST) and anomaly (SSTA) in the Indian Ocean (IO) for the period 1945.2003. The monthly mean SSTs taken from the global ocean reanalysis produced by the Simple Ocean Data Assimilation (SODA) are decomposed into four terms. The first term is the zonally averaged monthly climatological SST ([Tt(ϕ)]), which features relatively warm surface waters in the tropical IO and relatively colder surface waters over the southern IO. This term also has a relatively low SST pool between the Equator and 20°N. The SST at the center of the pool in summer is about 1-2°C lower than in spring and autumn. The second term is the spatially-varying monthly climatological SSTA (Tt*(λ,ϕ)), due mainly to the topographic effect and seasonal variation in wind forcing. The values of Tt*(λ,ϕ) are negative over the western coastal waters and positive over the eastern coastal and shelf waters in the tropical and northern IO. The third term is the zonally-averaged transient SSTA([T(ϕ,t)']Y). The largest values of [T(ϕ,t)']Y occur over the subtropical and mid-latitudes of the IO, which differs from the SSTA in the tropical waters of the Pacific Ocean. Time series of zonally and meridionally averaged T(ϕ,t)'Y in the tropical-subtropical IO is strongly correlated with the Indian Ocean basin-wide (IOBW) mode. The fourth term is the spatially-varying transient SSTA (T(λ,ϕ,t)*Y']. The REOF analysis of the fourth term demonstrates that the first REOF is correlated strongly with the South Indian Ocean Dipole (SIOD) mode. The second REOF is correlated strongly with the equatorial Indian Ocean dipole (IOD) mode. The third REOF is highly correlated with the tropical IOBW mode.


Blood ◽  
2013 ◽  
Vol 122 (21) ◽  
pp. 2342-2342
Author(s):  
Wenche Jy ◽  
Max E Johansen ◽  
Carlos Bidot ◽  
Rifat Pamukcu ◽  
Orlando Gomez-Marin ◽  
...  

Abstract Background Increasing evidence indicates that natural circulating red cell microparticles (RMP) contribute significantly to hemostasis. Accordingly, we produced RMP in vitro by high pressure extrusion of washed RBCs. We previously reported the hemostatic activity of our RMP product in vitro as well as its efficacy in arresting ear bleeding in rabbits, suggesting the potential of RMP as a hemostatic agent (Jy et al Thromb. Haemost., in press). Here we studied its hemostatic efficacy in a rabbit model of acute liver injury, as well as its short-term toxicity. Methods Male New Zealand White rabbits (mean weight 3.8kg) were randomly selected and assigned, one at a time, to an experimental (n = 9) or a control group (n = 10). All animals were sedated with 35mg/kg ketamine, 5mg/kg xylazine, and 0.01mg/kg glycopyrrolate 15 minutes before surgery. They were intubated and anesthetized with 2% isoflurane, and mechanically ventilated at approximately 20 breaths/min. The carotid artery and the jugular vein were canulated, and maintenance saline was administered at 20mL/hr. The abdomen was cleaned and shaved, and an incision was made from lower tip of the sternum to the bladder. A standardized injury of 9 incisions 30mm long by 4mm deep was inflicted to the liver, and two infusions of RMP (1.25x1011/kg) or saline were delivered via jugular catheter, first immediately post-incision, and again 10 minutes post-incision. Blood was collected in gauze pads at 10 min. intervals and weighed to calculate volume lost. Heart rate, blood pressure (BP), and temperature were continually monitored. The blood pressure (BP) of some of the animals fell very low (MAP<15) by 1 hr post-incision and resulted in death. Only those rabbits that survived 2 hr were used in analysis of blood loss and vital signs. Five of the 10 control rabbits survived 2 hr post-surgery (50%) compared to 5 of the 9 RMP-treated rabbits (56%). All surviving rabbits were euthanized with 0.2mL/kg Euthasol after 120 minutes. Results At early time points (30 – 60 min post-injury) when bleeding was most rapid, administration of RMP had no significant effect: mean (± SD) blood loss at 30 min was 46.1 ± 20.6 mL in the control vs. 26.6 ± 9.0 mL (p=0.07) in the RMP group. At 60 min it was 67.2 ± 24.3 mL vs. 53.4 ± 6.9 mL (p=0.23), respectively. Although at these early time points there were not significant differences, a trend of reduced blood loss was observed. At the 90 min time point, blood loss was 78.6 ± 25.9 mL in the control group compared to 55.7 ± 5.6 mL in the RMP group (p<0.05), a relative difference of ≈ 30%. At 120 min, the corresponding values were 89.8 ± 29.3 mL and 57.7 ± 4.4 mL (p < 0.01), a relative difference of ≈ 36% . Vitals were not significantly different between the control and RMP groups at any time point. Drop in BP tended to be greater in controls than in RMP rabbits. The difference in BP was marginally significant at 120 min. post-injury: systolic BP fell by 39.6 ±17.2 mmHg in controls vs. 18.6 ±15.0 mmHg in RMP-treated (p=0.07). In a short-term toxicity test, quadruple dose (5.0x1011/kg of RMP) was administered and effects observed for three hours: no obvious adverse effects on heart rate, BP, or temperature were observed. Conclusion/Discussion We previously reported dose-dependent reduction by RMP infusion in ear bleeding time of thrombocytopenic rabbits. Efficacy of infusions of RMP is evident in this severe hemorrhagic liver injury model after 30 - 60 min of acute injury when rapid bleeding was substantially slowing down. At 90 and 120 min post-injury, significantly less blood loss was observed in the RMP group compared to the controls, with relative differences of 30% and 36%. Studies are in progress to improve the model and to optimize dosages and scheduling of RMP administration for severe bleeding. Disclosures: No relevant conflicts of interest to declare.


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