Parasite (Schistosoma mansoni) and host (Biomphalaria glabrata) genetic diversity: population structure in a fragmented landscape

Parasitology ◽  
2001 ◽  
Vol 122 (5) ◽  
pp. 545-554 ◽  
Author(s):  
C. SIRE ◽  
J. LANGAND ◽  
V. BARRAL ◽  
A. THÉRON
Keyword(s):  
Genetic Diversity ◽  
Schistosoma Mansoni ◽  
Gene Diversity ◽  
Random Amplified Polymorphic Dna ◽  
Rattus Rattus ◽  
Biomphalaria Glabrata ◽  
Genetic Distances ◽  
Snail Host ◽  
Fragmented Landscape ◽  
Geographical Distances

Random amplified polymorphic DNA (RAPD) markers were used to quantify genetic diversity within and between 5 populations ofSchistosoma mansoniwithin its definitive host (Rattus rattus) and the 5 corresponding populations of the snail intermediate host (Biomphalaria glabrata) from a limited endemic area of murine schistosomiasis on the island of Guadeloupe. Analysis of molecular variance (AMOVA) and canonical correspondence analysis (CCA) were used to test the significance of genetic differentiation between populations. Both methods gave similar results. Of total gene diversity, 15.1% (AMOVA) and 18.8% (CCA) was partitioned between localities forS. mansoniwith an absence of association between genetic and geographical distances. Geographical localities accounted for 20.5% (CCA) of the total diversity forB. glabratapopulations. The genetic distances between pairs of parasite populations were not correlated with the genetic distances between the corresponding pairs of snail host populations. Such strong patterns of local differentiation of both parasite and snail populations are consistent with predictions based on metapopulation dynamics and may have implications on host–parasite susceptibility relationship through local adaptation processes.

Population genetic structure of Tunisian Hypericum humifusum assessed by RAPD markers

Biologia ◽  
2011 ◽  
Vol 66 (6) ◽  
Author(s):  
Afef Béjaoui ◽  
Abdennacer Boulila ◽  
Chokri Messaoud ◽  
Mohamed Boussaid
Keyword(s):  
Genetic Diversity ◽  
Arid Zone ◽  
Spatial Scales ◽  
Random Amplified Polymorphic Dna ◽  
Population Based ◽  
Genetic Distances ◽  
Ex Situ ◽  
Lower Semi ◽  
Geographical Distances ◽  
Semi Arid

AbstractThe genetic variation within and among seven Tunisian natural Hypericum humifusum L. populations belonging to three bioclimatic zones (sub-humid, upper semi-arid, and lower semi-arid) was assessed using random amplified polymorphic DNA markers. Eight selected primers produced a total of 166 bands, of which 153 were polymorphic. The genetic diversity within a population, based on Shannon’s index and percentage of polymorphic loci, was relatively high. The level of variation among populations did not differ significantly. However, the variation among populations grouped according to their bioclimates was significant.A high differentiation and a low gene flow were observed at all spatial scales among all populations. The upper semiarid populations exhibited the highest differentiation. The relationship between genetic and geographic distances was not significant indicating that structuring occurred due to founding events. The UPGMA analysis based on Nei & Li’s coefficients showed that individuals from each population clustered together. The cluster analysis based on genetic distances among populations did not show clear groupings relevant to geographical distances or bioclimates.The high differentiation among populations even through a small geographic range implies the collection of seeds from all populations to preserve, ex-situ, extant variation in the species. Populations from the upper semi-arid zone showing the highest genetic diversity should be first prospected.

Analysis of genetic diversity in red clover (Trifolium pratense L.) breeding populations as revealed by RAPD genetic markers

Genome ◽  
2003 ◽  
Vol 46 (4) ◽  
pp. 529-535 ◽  
Author(s):  
Odeth Ulloa ◽  
Fernando Ortega ◽  
Hugo Campos
Keyword(s):  
Genetic Diversity ◽  
Genetic Markers ◽  
Trifolium Pratense ◽  
Gene Diversity ◽  
Random Amplified Polymorphic Dna ◽  
Red Clover ◽  
Population Level ◽  
Genetic Distances ◽  
Polymorphic Loci ◽  
Breeding Populations

Red clover is an important forage legume species for temperate regions and very little is known about the genetic organization of its breeding populations. We used random amplified polymorphic DNA (RAPD) genetic markers to address the genetic diversity and the distribution of variation in 20 breeding populations and cultivars from Chile, Argentina, Uruguay, and Switzerland. Genetic distances were calculated for all possible pairwise combinations. A high level of polymorphism was found and the proportion of polymorphic loci across populations was 74.2%. A population derived from a non-certified seedlot displayed a higher proportion of polymorphic loci than its respective certified seedlot. Gene diversity values and population genetics parameters suggest that the populations analyzed are diverse. An analysis of molecular variance (AMOVA) revealed that the largest proportion of variation (80.4%) resides at the within population level. RAPD markers are a useful tool for red clover breeding programs. A dendrogram based on genetic distances divided the breeding populations analyzed into three distinct groups. The amount and partition of diversity observed can be of value in identifying the populations that parents of synthetic cultivars are derived from and to exploit the variation available in the populations analyzed.Key words: red clover, AMOVA, plant breeding.

Energy constraint exerted by the parasite Schistosoma mansoni on the locomotion of its snail host, Biomphalaria glabrata

1996 ◽  
Vol 74 (4) ◽  
pp. 594-598 ◽  
Author(s):  
Claudia Gérard
Keyword(s):  
Resource Allocation ◽  
Schistosoma Mansoni ◽  
Biomphalaria Glabrata ◽  
Snail Host ◽  
Locomotory Activity ◽  
Patent Period ◽  
Energy Constraint

The consequences of the constraint caused by the parasite Schistosoma mansoni on the locomotory activity of its snail host, Biomphalaria glabrata, were studied during the patent period. Rates of locomotion were determined 6 times per 24-h period for juvenile and adult snails with single-miracidium infections, then compared with those of healthy snails of the same age. The locomotory activity of infected snails was the same during the day and at night, whereas control snails moved less at night than during the day. The locomotion of snails infected when immature was similar to that of the controls during the day and superior at night. The locomotion of snails infected when mature decreased regularly during patency and clearly decreased in comparison with that of healthy snails. The results are interpreted in terms of energy constraint on the mode of resource allocation of the host due to the parasite.

Genetic Diversity Analysis of Salvadora Oleoides Decne: An Evergreen Dry Land Fruit Tree of Rajasthan, India

2021 ◽  
Author(s):  
Juleri M Upendra ◽  
Shari Nair ◽  
Satyawada R Rao ◽  
Harchand R Dagla
Keyword(s):  
Genetic Diversity ◽  
Random Amplified Polymorphic Dna ◽  
Splice Junction ◽  
Genetic Distances ◽  
Climatic Conditions ◽  
Fruit Tree ◽  
Group Method ◽  
Dry Land ◽  
Intron Splice ◽  
Semi Arid

Abstract Genetic diversity of Salvadora oleoides Decne is analyzed by cumulative data of 10 Random Amplified Polymorphic DNA (RAPD), 10 Inter Simple Sequence Repeats (ISSR) and 7 Intron Splice Junction (ISJ) markers. The plant is an evergreen fruit tree and well distributed in semi-arid and sub-humid climatic conditions of Rajasthan, India. RAPD, ISSR and ISJ primers accounted for 84.4%, 85.3%, 85.9% polymorphism. Average 0.23 PIC is accounted for RAPD, ISSR and ISJ primers. The genetic similarity ranged between 0.42-0.89. Analysis of molecular variance (AMOVA) revealed higher variation (73%) at intra-population than inter-population (27%) level. Genetic distances based on Un-weighted Pair Group Method with Arithmetic mean (UPGMA) dendrogram and Principal Coordinate Analysis (PCoA) is correlated with physical distances or climatic conditions of Salvadora oleoides Decne in a semi-arid and sub-humid environment of Rajasthan. The present investigation may help in the understanding of gene flow systems between physical distances and environmental heterogeneity of the populations for better management of Salvadora oleoides Decne in the region.

Detection of genetic diversity in rough fescue (Festuca campestris Rydb) populations of southern Alberta and British Columbia, Canada, using RAPD markers

2008 ◽  
Vol 88 (2) ◽  
pp. 307-312
Author(s):  
Zhao Mengli ◽  
Han Bing ◽  
Walter D Willms
Keyword(s):  
Genetic Diversity ◽  
British Columbia ◽  
Genetic Distance ◽  
Random Amplified Polymorphic Dna ◽  
Geographic Distance ◽  
Genetic Distances ◽  
Gene Frequencies ◽  
Southern Alberta ◽  
Potential Adaptation ◽  
Rough Fescue

Mountain rough fescue (Festuca campestris Rydb.) is a tufted native grass in southern Alberta and British Columbia, Canada, and has attracted interest for use in reclamation. However, its seed is often available from only a few localized sources and may not be adapted for areas removed from the collection site. We conducted a study to determine the genetic variability among rough fescue populations to assess its potential adaptation. Thirty plants were collected from each of six populations and analyzed using Random Amplified Polymorphic DNA (RAPD). One population (Kamloops, BC) was separated by several mountain ranges from the five easterly Alberta populations.The Kamloops population was also separated from the Alberta populations by genetic distance in two clusters. Of the total genetic variation present in the data, 21% was found among populations while the remaining (79%) was found within populations. Nei’s genetic distances among populations were related to their geographical distances. Genetic differences among populations appeared to be caused primarily by differences in gene frequencies rather than rare genes. Also, genetic diversity appeared to increase from west to east suggesting that the more easterly populations had greater adaptation potential. We speculate that the more easterly populations are less likely to share genes since the prevailing winds are from the west. Germplasm from the more easterly populations may be used with suitable precautions within Alberta and possibly around Kamloops. Key words: Genetic distance, geographic distance, reclamation, potential adaptation

scholarly journals Assessment of genetic diversity among surian Toona sinensis Roem in progenies test using random amplified polymorphic DNA markers

2018 ◽  
Vol 22 (1) ◽  
pp. 22
Author(s):  
Jayusman Jayusman ◽  
Muhammad Na’iem ◽  
Sapto Indrioko ◽  
Eko Bhakti Hardiyanto ◽  
ILG Nurcahyaningsih
Keyword(s):  
Genetic Diversity ◽  
Dna Markers ◽  
Rapd Markers ◽  
Random Amplified Polymorphic Dna ◽  
Management Strategies ◽  
Genetic Distances ◽  
Sampled Data ◽  
Toona Sinensis ◽  
The Mean ◽  
Individual Trees

Surian Toona sinensis Roem is one of the most widely planted species in Indonesia. This study aimed to estimate the genetic diversity between a number of surian populations in a progeny test using RAPD markers, with the goal of proposing management strategies for a surian breeding program. Ninety-six individual trees from 8 populations of surian were chosen as samples for analysis. Eleven polymorphic primers (OP-B3, OP-B4, OP-B10, OP-H3, OP-Y6, OP-Y7, OP-Y8, OP-Y10, OP-Y11, OP-Y14, and OP-06) producing reproducible bands were analyzed for the 96 trees, with six trees per family sampled. Data were analyzed using GenAlEx 6.3, NTSYS 2.02. The observed percentage of polymorphic loci ranged from 18.2% to 50%. The mean level of genetic diversity among the surian populations was considered to be moderate (He 0.304). Cluster analysis grouped the genotypes into two main clusters, at similarity levels of 0.68 and 0.46. The first two axes of the PCoA explained 46.16% and 25.54% of the total variation, respectively. The grouping of samples into clusters and subclusters did not correspond with family and their distances, but the grouping was in line with the genetic distances of the samples.

scholarly journals Molluscicidal and parasiticidal activities of Eryngium triquetrum essential oil on Schistosoma mansoni and its intermediate snail host Biomphalaria glabrata, a double impact

2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Ronaldo de Carvalho Augusto ◽  
Nadjiya Merad ◽  
Anne Rognon ◽  
Benjamin Gourbal ◽  
Cédric Bertrand ◽  
...  
Keyword(s):  
Essential Oil ◽  
Schistosoma Mansoni ◽  
Vector Control ◽  
Biological Effects ◽  
Biomphalaria Glabrata ◽  
Snail Host ◽  
Intermediate Hosts ◽  
Egg Hatching ◽  
Toxic Activity ◽  
Oil Extract

Abstract Background Freshwater snails are the intermediate hosts of a large variety of trematode flukes such as Schistosoma mansoni responsible for one of the most important parasitic diseases caused by helminths, affecting 67 million people worldwide. Recently, the WHO Global Vector Control Response 2017–2030 (GVCR) programme reinforced its message for safer molluscicides as part of required strategies to strengthen vector control worldwide. Here, we present the essential oil from Eryngium triquetrum as a powerful product with molluscicide and parasiticide effect against S. mansoni and the snail intermediate host Biomphalaria glabrata. Methods In the present study, we describe using several experimental approaches, the chemical composition of E. triquetrum essential oil extract and its biological effects against the snail B. glabrata and its parasite S. mansoni. Vector and the free-swimming larval stages of the parasite were exposed to different oil concentrations to determine the lethal concentration required to produce a mortality of 50% (LC50) and 90% (LC90). In addition, toxic activity of this essential oil was analyzed against embryos of B. glabrata snails by monitoring egg hatching and snail development. Also, short-time exposure to sublethal molluscicide concentrations on S. mansoni miracidia was performed to test a potential effect on parasite infectivity on snails. Mortality of miracidia and cercariae of S. mansoni is complete for 5, 1 and 0.5 ppm of oil extract after 1 and 4 h exposure. Results The major chemical component found in E. triquetrum oil determined by GC-FID and GC/MS analyses is an aliphatic polyacetylene molecule, the falcarinol with 86.9–93.1% of the total composition. The LC50 and LC90 values for uninfected snails were 0.61 and 1.02 ppm respectively for 24 h exposure. At 0.5 ppm, the essential oil was two times more toxic to parasitized snails with a mortality rate of 88.8 ± 4.8%. Moderate embryonic lethal effects were observed at the concentration of 1 ppm. Severe surface damage in miracidia was observed with a general loss of cilia that probably cause their immobility. Miracidia exposed 30 min to low concentration of plant extract (0.1 ppm) were less infective with 3.3% of prevalence compare to untreated with a prevalence of 44%. Conclusions Essential oil extracted from E. triquetrum and falcarinol must be considered as a promising product for the development of new interventions for schistosomiasis control and could proceed to be tested on Phase II according to the WHO requirements.

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