High diversity of fish ectoparasitic monogeneans (Dactylogyrus) in the Iberian Peninsula: a case of adaptive radiation?

AbstractThe epicontinental fauna of the Iberian Peninsula is strongly influenced by its geographical history. As the possibilities for dispersion of organisms into and from this region were (and still are) limited, the local fauna consists almost exclusively of endemic species. Almost all Iberian freshwater fishes of the families Leuciscidae and Cyprinidae are endemic and on-going research on these taxa continually uncovers new species. Nevertheless, information on their host-specific parasites remains scarce. In this study, we investigate the diversity and phylogenetic relationships in monogeneans of the genus Dactylogyrus (gill ectoparasites specific to cyprinoid fish) in the Iberian Peninsula. Twenty-two species were collected and identified from 19 host species belonging to Cyprinidae and Leuciscidae. A high degree of endemism was observed, with 21 Dactylogyrus species reported from Iberia only and a single species, D. borealis, also reported from other European regions. Phylogenetic analysis split the endemic Iberian Dactylogyrus into two well-supported clades, the first encompassing Dactylogyrus parasitizing endemic Luciobarbus spp. only, and the second including all Dactylogyrus species of endemic leuciscids and four species of endemic cyprinids. Species delimitation analysis suggests a remarkable diversity and existence of a multitude of cryptic Dactylogyrus species parasitizing endemic leuciscids (Squalius spp. and representatives of Chondrostoma s.l.). These results suggest a rapid adaptive radiation of Dactylogyrus in this geographically isolated region, closely associated with their cyprinoid hosts. Moreover, phylogenetic analysis supports that Dactylogyrus parasites colonized the Iberian Peninsula through multiple dispersion events.

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A monograph of the Bradoriid arthropods from the Lower Cambrian of SW China

Transactions of the Royal Society of Edinburgh Earth Sciences ◽

10.1017/s0263593300000286 ◽

2001 ◽

Vol 92 (3) ◽

pp. 347-409 ◽

Cited By ~ 7

Author(s):

Hou Xian-guang ◽

David J. Siveter ◽

Mark Williams ◽

Feng Xiang-hong

Keyword(s):

Lower Cambrian ◽

Yunnan Province ◽

Single Species ◽

Taxonomic Diversity ◽

Zoological Nomenclature ◽

Yangtze Platform ◽

Animal Group ◽

Sw China ◽

Almost All ◽

High Diversity

ABSTRACTThis paper evaluates the taxonomy, biostratigraphy, and palaeogeographical significance of the Cambrian bradoriid arthropods of China, the majority of which occur in the lower Cambrian of SW China. Of bradoriid faunas world-wide, Chinese occurrences yield the greatest number of specimens and a comparatively high diversity at all taxonomic levels. Nevertheless, taxonomic diversity is much less than previously supposed. Some 80 bradoriid genera and nearly 300 species have been proposed on the basis of Chinese material. By contrast, in our study, which encompasses all of the important Chinese bradoriid faunas, we recognise only 16 genera and 21 species, including those treated under open nomenclature. Interpretation of deformed specimens as discrete species and lack of application of the rules of the International Code of Zoological Nomenclature resulted in taxonomic splitting and a proliferation of names. There are an additional 12 poorly known monotypic genera of uncertain systematic status that are listed but not treated further herein. One phosphatocopid species, a group originally thought closely related to the Bradoriida, is also described.Most Chinese bradoriid material is known from Yunnan Province; the group also occurs in Guizhou, Henan, Hubei, Hunan, Liaoning, Qinghai, Shaanxi, Sichuan, Xinjiang and Zhejiang provinces. The first bradoriids occur just below the Abadiella trilobite Biozone. They are most prolific and diverse in the Qiongzhusian Stage, constituting the most abundant animal group; the succeeding Canglangpuian Stage contains fewer individuals and species. A previously proposed bradoriid biozonal scheme lacks rigour and is of little practical value: of the five supposed biozones, two correspond to trilobite zones and three are based on taxa that herein are considered to belong to a single species.Palaeogeographically the bradoriids occur in the Middle and especially the Western subprovinces of the Cambrian of the SW China (Yangtze) Platform. Almost all of the bradoriid genera and species are endemic to that region. The palaeogeographical links with other bradoriid faunas are mostly within the Redlichiid trilobite Realm, with areas such as N China, Australia and parts of central Asia.

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Deceptive morphological variation in Hirschmanniella mucronata (Nematoda: Pratylenchidae) and a polytomous key to the genus

Nematology ◽

10.1163/15685411-00002867 ◽

2015 ◽

Vol 17 (4) ◽

pp. 377-400 ◽

Cited By ~ 4

Author(s):

Kimkhuy Khun ◽

Wilfrida Decraemer ◽

Marjolein Couvreur ◽

Gerrit Karssen ◽

Hanne Steel ◽

...

Keyword(s):

Phylogenetic Analysis ◽

Morphological Variation ◽

Species Delimitation ◽

Single Species ◽

Valid Species ◽

Diagnostic Features ◽

Sister Relationship ◽

Species Inquirenda ◽

Phylogenetic Framework ◽

Stylet Length

Hirschmanniella mucronatapopulations isolated from two Cambodian provinces were characterised using morphological, morphometric and molecular criteria. Examination of 1024 specimens from 60 different paddy fields revealed high intraspecific variation in morphology and morphometrics, especially in tail terminus shape and stylet length. Sequence results confirmed that morphologically divergent individuals represent a single species, suggesting that neglecting morphological variation has led to an overestimation ofHirschmannielladiversity in former studies. Phylogenetic analysis of the SSU, D2-D3, LSU and ITS1-5.8S-ITS2 regions revealed three concordant clades,H. mucronatahaving a sister relationship withH. kwazunaandH. loofi. Plotting the diagnostic features, including tail terminus shape, stylet length and lip region morphology on the phylogenetic framework, revealed that none of them supported the clades and represented convergent features. All three molecular markers were able to discriminate allHirschmanniellaspecies, but the D2-D3 region was the easiest, fastest and most successful region to be amplified. Species delimitation and the diagnostic features ofHirschmanniellawere re-evaluated.Hirschmanniella abnormalis and H. exactaare considered to be junior synonyms ofH. oryzaeandH. mannaiaspecies inquirenda. Finally, a list of valid species with indication of synonyms and a polytomous key are provided.

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Diversity and Evolution of pogo and Tc1/mariner Transposons in the Apoidea Genomes

Biology ◽

10.3390/biology10090940 ◽

2021 ◽

Vol 10 (9) ◽

pp. 940

Author(s):

Yibing Liu ◽

Wencheng Zong ◽

Mohamed Diaby ◽

Zheguang Lin ◽

Saisai Wang ◽

...

Keyword(s):

Phylogenetic Analysis ◽

Apis Mellifera ◽

Species Diversity ◽

Horizontal Transfer ◽

Vital Role ◽

Apis Mellifera Carnica ◽

Social Bees ◽

Genomic Variations ◽

Almost All ◽

High Diversity

Bees (Apoidea), the largest and most crucial radiation of pollinators, play a vital role in the ecosystem balance. Transposons are widely distributed in nature and are important drivers of species diversity. However, transposons are rarely reported in important pollinators such as bees. Here, we surveyed 37 bee genomesin Apoidea, annotated the pogo and Tc1/mariner transposons in the genome of each species, and performed a phylogenetic analysis and determined their overall distribution. The pogo and Tc1/mariner families showed high diversity and low abundance in the 37 species, and their proportion was significantly higher in solitary bees than in social bees. DD34D/mariner was found to be distributed in almost all species and was found in Apis mellifera, Apis mellifera carnica, Apis mellifera caucasia, and Apis mellifera mellifera, and Euglossa dilemma may still be active. Using horizontal transfer analysis, we found that DD29-30D/Tigger may have experienced horizontal transfer (HT) events. The current study displayed the evolution profiles (including diversity, activity, and abundance) of the pogo and Tc1/mariner transposons across 37 species of Apoidea. Our data revealed their contributions to the genomic variations across these species and facilitated in understanding of the genome evolution of this lineage.

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Stoichiometry and compositional plasticity of the yeast nuclear pore complex revealed by quantitative fluorescence microscopy

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.1719398115 ◽

2018 ◽

Vol 115 (17) ◽

pp. E3969-E3977 ◽

Cited By ~ 36

Author(s):

Sasikumar Rajoo ◽

Pascal Vallotton ◽

Evgeny Onischenko ◽

Karsten Weis

Keyword(s):

Nuclear Pore Complex ◽

Yeast Cells ◽

Nuclear Pore ◽

Altered Expression ◽

Copy Numbers ◽

Quantitative Image ◽

Multiple Copies ◽

Almost All ◽

High Degree

The nuclear pore complex (NPC) is an eightfold symmetrical channel providing selective transport of biomolecules across the nuclear envelope. Each NPC consists of ∼30 different nuclear pore proteins (Nups) all present in multiple copies per NPC. Significant progress has recently been made in the characterization of the vertebrate NPC structure. However, because of the estimated size differences between the vertebrate and yeast NPC, it has been unclear whether the NPC architecture is conserved between species. Here, we have developed a quantitative image analysis pipeline, termed nuclear rim intensity measurement (NuRIM), to precisely determine copy numbers for almost all Nups within native NPCs of budding yeast cells. Our analysis demonstrates that the majority of yeast Nups are present at most in 16 copies per NPC. This reveals a dramatic difference to the stoichiometry determined for the human NPC, suggesting that despite a high degree of individual Nup conservation, the yeast and human NPC architecture is significantly different. Furthermore, using NuRIM, we examined the effects of mutations on NPC stoichiometry. We demonstrate for two paralog pairs of key scaffold Nups, Nup170/Nup157 and Nup192/Nup188, that their altered expression leads to significant changes in the NPC stoichiometry inducing either voids in the NPC structure or substitution of one paralog by the other. Thus, our results not only provide accurate stoichiometry information for the intact yeast NPC but also reveal an intriguing compositional plasticity of the NPC architecture, which may explain how differences in NPC composition could arise in the course of evolution.

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Species delimitation of colour polymorphic Cladophorus (Coleoptera: Lycidae) from New Guinea

Zootaxa ◽

10.11646/zootaxa.4320.3.6 ◽

2017 ◽

Vol 4320 (3) ◽

pp. 505 ◽

Cited By ~ 4

Author(s):

ROMANA KALOUSOVA ◽

LADISLAV BOCAK

Keyword(s):

Phylogenetic Analysis ◽

Mitochondrial Dna ◽

Related Species ◽

Species Delimitation ◽

Morphological Differentiation ◽

Morphological Characters ◽

Molecular Data ◽

Closely Related Species ◽

Dna Fragment ◽

Colour Patterns

Cladophorus Guérin-Méneville, 1830 are endemic Papuan net-winged beetles which take part in highly diverse Müllerian mimicry rings. Available specimens were sequenced for cox1–tRNA-Leu–cox2 mitochondrial DNA fragment and the species delimitations were based on the genetic distance, phylogenetic analysis, and morphology. Three earlier described species were identified in the recently collected material and further 10 species are described: C. pallescens sp. nov., C. bicolor sp. nov., C. craterensis sp. nov., C. motykai sp. nov., C. mindikensis sp. nov., C. kailakiensis sp. nov., C. manokwarensis sp. nov., C. haiaensis sp. nov., C. humeralis sp. nov., and C. boceki sp. nov. DNA-based identifications provided some ambiguous results and closely related species could not be robustly delimited using solely molecular data. Additionally, the species limits were based on clearly defined morphological characters and the morphological differentiation was found unlinked from the genetic divergence. Colour patterns cannot be used for identification because all species available in more specimens were polymorphic and followed various local co-mimics. The Papuan fauna of Cladophorus is very diverse and the closely related species regularly occur in limited regions. Differentiation within restricted ranges is therefore considered as the main speciation mode.

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A new species of Scrophularia (Scrophulariaceae) from Hubei, China

Phytotaxa ◽

10.11646/phytotaxa.350.1.1 ◽

2018 ◽

Vol 350 (1) ◽

pp. 1

Author(s):

RUI-HONG WANG ◽

MAO-QIN XIA ◽

JIN-BO TAN ◽

CHUAN CHEN ◽

XIN-JIE JIN ◽

...

Keyword(s):

Phylogenetic Analysis ◽

New Species ◽

Species Delimitation ◽

Morphological Characters ◽

Central China ◽

Molecular Phylogenetic Analysis ◽

Leaf Margin ◽

Close Relationship ◽

Molecular Phylogenetic ◽

A New Species

A new species, Scrophularia jinii (Scrophulariaceae), from Central China is described and illustrated. This new species was formerly misidentified as S. fargesii, from which it differs in many morphological characters. Moreover, it is distinct with all known Scrophularia species in its unique deeply double serrate leaf margin with 3–7 big teeth on each side. Molecular phylogenetic analysis further supports its species delimitation and suggests a close relationship with several Japanese and North American species.

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Species delimitation in the leaf beetle genus Macroplea (Coleoptera, Chrysomelidae) based on mitochondrial DNA, and phylogeographic considerations

Insect Systematics & Evolution ◽

10.1163/187631206788831443 ◽

2006 ◽

Vol 37 (4) ◽

pp. 467-479 ◽

Cited By ~ 10

Author(s):

Gregor Kölsch ◽

Bo Vest Pedersen ◽

Olof Biström

Keyword(s):

Phylogenetic Analysis ◽

Mitochondrial Dna ◽

Species Delimitation ◽

Mitochondrial Gene ◽

Leaf Beetle ◽

Genetic Distances ◽

Amino Acid Substitutions ◽

Species Status ◽

Leaf Beetles ◽

Gene Coding

AbstractThe genus Macroplea Samouelle, 1819 is a group of highly specialized aquatic leaf beetles occurring in the Palaearctic. Since the members of this genus are morphologically very similar, we addressed the question of species identification and delimitation by analysing the second half of the mitochondrial gene coding for the cytochrome oxidase I (COI) subunit. Species limits are inferred from the multimodal frequency distribution of genetic distances between specimens: low genetic distances within a species are clearly set apart from distances between species. The species status of the hitherto controversial species M. japana (Jacoby, 1885) is confirmed. The pattern of nucleotide and amino acid substitutions is discussed in the light of functional domains of the COI molecule. Although the data are preliminary, the results provide new data on the distribution of the species. Together with the phylogenetic analysis they allow for a discussion of the phylogeography of the genus.

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Cranial morphology and systematics of an extraordinary sample of the Late Neogene dwarf tapir, Tapirus polkensis (Olsen)

Journal of Paleontology ◽

10.1666/08-062.1 ◽

2009 ◽

Vol 83 (2) ◽

pp. 238-262 ◽

Cited By ~ 24

Author(s):

Richard C. Hulbert ◽

Steven C. Wallace ◽

Walter E. Klippel ◽

Paul W. Parmalee

Keyword(s):

Single Species ◽

Relative Strength ◽

Cranial Morphology ◽

Linear Measurements ◽

Average Mass ◽

Gray Fossil Site ◽

Extant Species ◽

Late Neogene ◽

Fossil Site ◽

Almost All

The previously poorly known “Tapiravus” polkensis Olsen, 1960 (Mammalia, Perissodactyla, Tapiridae) is now known from abundant, well preserved specimens from both the type area in central Florida and from the Gray Fossil Site (GFS) in eastern Tennessee. The latter has produced over 75 individuals, the greatest number of tapirids from a single fossil site, including many articulated skeletons. Almost all linear measurements taken on skulls, mandibles, and cheek teeth from GFS have coefficients of variation less than 10 (most between 3 and 7), indicating the presence of a single species. However, the sample reveals considerable intraspecific variation for a few key morphologic features, including development of the sagittal crest, outline shape of the nasals, and number and relative strength of lingual cusps on the P1. The Florida sample of T. polkensis is more limited, but has the same state as the GFS sample for all preserved characters of systematic significance, and while the Florida teeth are on average smaller (especially narrower lower cheek teeth), they fall either within or just below the observed range of the Gray Fossil Site population. The new material supports a reassignment of “Tapiravus” polkensis to the genus Tapirus, and demonstrates that the geologic age of the species is significantly younger than previously thought, Hemphillian rather than Barstovian. Tapirus polkensis is the smallest known North American Tapirus, and smaller than any of the extant species in the genus, with an estimated average mass of 125 kg.

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Bioactive Compounds in Sarcocornia and Arthrocnemum, Two Wild Halophilic Genera from the Iberian Peninsula

Plants ◽

10.3390/plants10102218 ◽

2021 ◽

Vol 10 (10) ◽

pp. 2218

Author(s):

Irene Sánchez-Gavilán ◽

Esteban Ramírez Chueca ◽

Vicenta de la Fuente García

Keyword(s):

Fatty Acids ◽

Salt Tolerance ◽

Ferulic Acid ◽

Iberian Peninsula ◽

Bioactive Compounds ◽

Phenolic Acids ◽

Coastal Marshes ◽

Esi Ms ◽

Tinto River ◽

High Diversity

(1) Background: this study describes bioactive compounds in the following halophytes: Sarcocornia (S. alpini, S. pruinosa, and S. perennis) and Arthrocnemum (A. macrostachyum). The material comes from: coastal marshes in Tinto River, Guadiana River, and some interior provinces from the Iberian Peninsula. (2) Methods: the techniques used were Folin–Ciocalteu, GC-MS, and ESI-MS/MS. (3) Results: Five phenolic acids were found in Sarcocornia: trans-cinnamic, salicylic, veratric, coumaric, and caffeic acids. In addition, in Arthronemum, ferulic acid was also detected. The obtained flavonoids were cyanidin-3-O-arabinoside, luteolin-7-glucoside, dihydroquercetin, and p-coumaroyl-glucoside. They also presented fatty acids, such as palmitic, linoleic, and oleic acids in Sarcocornia, while palmitic, linolenic, and stearic acids were the main fatty acids in A. macrostachyum. (4) Conclusions: the high diversity of the compounds identified confirms the relation between nutritional interest and salt tolerance in halophytes.

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Trace amines inhibit insect odorant receptor function through antagonism of the co-receptor subunit

F1000Research ◽

10.12688/f1000research.3825.1 ◽

2014 ◽

Vol 3 ◽

pp. 84 ◽

Cited By ~ 18

Author(s):

Sisi Chen ◽

Charles W. Luetje

Keyword(s):

Odorant Receptor ◽

Olfactory Receptors ◽

Single Species ◽

Insect Species ◽

Receptor Subunit ◽

Trace Amines ◽

Vector Mosquito ◽

Exogenous Compounds ◽

Potent Antagonist ◽

High Degree

Many insect behaviors are driven by olfaction, making insect olfactory receptors (ORs) appealing targets for insect control. Insect ORs are odorant-gated ion channels, with each receptor thought to be composed of a representative from a large, variable family of odorant binding subunits and a highly conserved co-receptor subunit (Orco), assembled in an unknown stoichiometry. Synthetic Orco directed agonists and antagonists have recently been identified. Several Orco antagonists have been shown to act via an allosteric mechanism to inhibit OR activation by odorants. The high degree of conservation of Orco across insect species results in Orco antagonists having broad activity at ORs from a variety of insect species and suggests that the binding site for Orco ligands may serve as a modulatory site for compounds endogenous to insects or may be a target of exogenous compounds, such as those produced by plants. To test this idea, we screened a series of biogenic and trace amines, identifying several as Orco antagonists. Of particular interest were tryptamine, a plant-produced amine, and tyramine, an amine endogenous to the insect nervous system. Tryptamine was found to be a potent antagonist of Orco, able to block Orco activation by an Orco agonist and to allosterically inhibit activation of ORs by odorants. Tyramine had effects similar to those of tryptamine, but was less potent. Importantly, both tryptamine and tyramine displayed broad activity, inhibiting odorant activation of ORs of species from three different insect orders (Diptera, Lepidoptera and Coleoptera), as well as odorant activation of six diverse ORs from a single species (the human malaria vector mosquito, Anopheles gambiae). Our results suggest that endogenous and exogenous natural compounds serve as Orco ligands modulating insect olfaction and that Orco can be an important target for the development of novel insect repellants.

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