scholarly journals Conspecific migration and environmental setting determine parasite infracommunities of non-migratory individual fish

Parasitology ◽  
2021 ◽  
pp. 1-35
Author(s):  
Eloïse C. Rochat ◽  
Jakob Brodersen ◽  
Isabel Blasco-Costa
Keyword(s):  
Individual Fish ◽  
Environmental Setting

scholarly journals Non-Lethal Sequential Individual Monitoring of Viremia in Relation to DNA Vaccination in Fish–Example Using a Salmon Alphavirus DNA Vaccine in Atlantic Salmon Salmo salar

Vaccines ◽  
2021 ◽  
Vol 9 (2) ◽  
pp. 163
Author(s):  
Catherine Collins ◽  
Katherine Lester ◽  
Jorge Del-Pozo ◽  
Bertrand Collet
Keyword(s):  
Dna Vaccine ◽  
Experimental Infection ◽  
Vaccine Efficacy ◽  
Dna Vaccines ◽  
Experimental Studies ◽  
Dna Vaccination ◽  
Line System ◽  
Individual Fish ◽  
Antibody Levels ◽  
Subtype 3

Traditionally, commercial testing for vaccine efficacy has relied on the mass infection of vaccinated and unvaccinated animals and the comparison of mortality prevalence and incidence. For some infection models where disease does not cause mortality this approach to testing vaccine efficacy is not useful. Additionally, in fish experimental studies on vaccine efficacy and immune response the norm is that several individuals are lethally sampled at sequential timepoints, and results are extrapolated to represent the kinetics of immune and disease parameters of an individual fish over the entire experimental infection period. In the present study we developed a new approach to vaccine testing for viremic viruses in fish by following the same individuals over the course of a DNA vaccination and experimental infection through repeated blood collection and analyses. Injectable DNA vaccines are particularly efficient against viral disease in fish. To date, two DNA vaccines have been authorised for use in fish farming, one in Canada against Infectious Haemorrhagic Necrotic virus and more recently one in Europe against Salmon Pancreatic Disease virus (SPDv) subtype 3. In the current study we engineered and used an experimental DNA vaccine against SPDv subtype 1. We measured viremia using a reporter cell line system and demonstrated that the viremia phase was completely extinguished following DNA vaccination. Differences in viremia infection kinetics between fish in the placebo group could be related to subsequent antibody levels in the individual fish, with higher antibody levels at terminal sampling in fish showing earlier viremia peaks. The results indicate that sequential non-lethal sampling can highlight associations between infection traits and immune responses measured at asynchronous timepoints and, can provide biological explanations for variation in data. Similar to results observed for the SPDv subtype 3 DNA vaccine, the SPDv subtype 1 DNA vaccine also induced an interferon type 1 response after vaccination and provided high protection against SPDv under laboratory conditions when fish were challenged at 7 weeks post-vaccination.

Sounds associated with foraging and prey capture in individual fish-eating killer whales, Orcinus orca

2019 ◽  
Vol 146 (5) ◽  
pp. 3475-3486 ◽  
Author(s):  
Marla M. Holt ◽  
M. Bradley Hanson ◽  
Candice K. Emmons ◽  
David K. Haas ◽  
Deborah A. Giles ◽  
...  
Keyword(s):  
Prey Capture ◽  
Orcinus Orca ◽  
Killer Whales ◽  
Individual Fish

scholarly journals Conjugative plasmids: vessels of the communal gene pool

2009 ◽  
Vol 364 (1527) ◽  
pp. 2275-2289 ◽  
Author(s):  
Anders Norman ◽  
Lars H. Hansen ◽  
Søren J. Sørensen
Keyword(s):  
Gene Transfer ◽  
Horizontal Gene Transfer ◽  
Significant Contribution ◽  
Prokaryotic Genome ◽  
Whole Genome ◽  
Adaptive Traits ◽  
Conjugative Plasmids ◽  
Environmental Setting ◽  
Genome Analyses ◽  
Insight Into

Comparative whole-genome analyses have demonstrated that horizontal gene transfer (HGT) provides a significant contribution to prokaryotic genome innovation. The evolution of specific prokaryotes is therefore tightly linked to the environment in which they live and the communal pool of genes available within that environment. Here we use the term supergenome to describe the set of all genes that a prokaryotic ‘individual’ can draw on within a particular environmental setting. Conjugative plasmids can be considered particularly successful entities within the communal pool, which have enabled HGT over large taxonomic distances. These plasmids are collections of discrete regions of genes that function as ‘backbone modules’ to undertake different aspects of overall plasmid maintenance and propagation. Conjugative plasmids often carry suites of ‘accessory elements’ that contribute adaptive traits to the hosts and, potentially, other resident prokaryotes within specific environmental niches. Insight into the evolution of plasmid modules therefore contributes to our knowledge of gene dissemination and evolution within prokaryotic communities. This communal pool provides the prokaryotes with an important mechanistic framework for obtaining adaptability and functional diversity that alleviates the need for large genomes of specialized ‘private genes’.

scholarly journals Vulnerability of individual fish to capture by trawling is influenced by capacity for anaerobic metabolism

2015 ◽  
Vol 282 (1813) ◽  
pp. 20150603 ◽  
Author(s):  
Shaun S. Killen ◽  
Julie J. H. Nati ◽  
Cory D. Suski
Keyword(s):  
Large Scale ◽  
Swimming Performance ◽  
Anaerobic Capacity ◽  
Standard Metabolic Rate ◽  
Metabolic Demand ◽  
Evolutionary Forces ◽  
Individual Fish ◽  
Fundamental Information ◽  
Behavioural Phenotypes ◽  
And Function

The harvest of animals by humans may constitute one of the strongest evolutionary forces affecting wild populations. Vulnerability to harvest varies among individuals within species according to behavioural phenotypes, but we lack fundamental information regarding the physiological mechanisms underlying harvest-induced selection. It is unknown, for example, what physiological traits make some individual fish more susceptible to capture by commercial fisheries. Active fishing methods such as trawling pursue fish during harvest attempts, causing fish to use both aerobic steady-state swimming and anaerobic burst-type swimming to evade capture. Using simulated trawling procedures with schools of wild minnows Phoxinus phoxinus , we investigate two key questions to the study of fisheries-induced evolution that have been impossible to address using large-scale trawls: (i) are some individuals within a fish shoal consistently more susceptible to capture by trawling than others?; and (ii) if so, is this related to individual differences in swimming performance and metabolism? Results provide the first evidence of repeatable variation in susceptibility to trawling that is strongly related to anaerobic capacity and swimming ability. Maximum aerobic swim speed was also negatively correlated with vulnerability to trawling. Standard metabolic rate was highest among fish that were least vulnerable to trawling, but this relationship probably arose through correlations with anaerobic capacity. These results indicate that vulnerability to trawling is linked to anaerobic swimming performance and metabolic demand, drawing parallels with factors influencing susceptibility to natural predators. Selection on these traits by fisheries could induce shifts in the fundamental physiological makeup and function of descendent populations.

scholarly journals Objective determination of the sea age of Atlantic salmon from the sizes and dates of capture of individual fish

2010 ◽  
Vol 68 (1) ◽  
pp. 130-143 ◽  
Author(s):  
Philip J. Bacon ◽  
William S. C. Gurney ◽  
Eddie McKenzie ◽  
Bryce Whyte ◽  
Ronald Campbell ◽  
...  
Keyword(s):  
Atlantic Salmon ◽  
Fishery Management ◽  
East Coast ◽  
Probability Distributions ◽  
Age Classes ◽  
Individual Fish ◽  
Bivariate Probability ◽  
Management And Conservation ◽  
Objective Determination

Abstract Bacon, P. J., Gurney, W. S. C., McKenzie, E., Whyte, B., Campbell, R., Laughton, R., Smith, G., and MacLean, J. 2011. Objective determination of the sea age of Atlantic salmon from the sizes and dates of capture of individual fish. – ICES Journal of Marine Science, 68: 130–143. The sea ages of Atlantic salmon indicate crucial differences between oceanic feeding zones that have important implications for conservation and management. Historical fishery-catch records go back more than 100 years, but the reliability with which they discriminate between sea-age classes is uncertain. Research data from some 188 000 scale-aged Scottish salmon that included size (length, weight) and seasonal date of capture on return to the coast were investigated to devise a means of assigning sea age to individual fish objectively. Two simple bivariate probability distributions are described that discriminate between 1SW and 2SW fish with 97% reliability, and between 2SW and 3SW fish with 70% confidence. The same two probability distributions achieve this accuracy across five major east coast Scottish rivers and five decades. They also achieve the same exactitude for a smaller recent dataset from the Scottish west coast, from the River Tweed a century ago (1894/1895), and for salmon caught by rod near the estuary. More surprisingly, they also achieve the same success for rod-caught salmon taken at beats remote from the estuary and including capture dates when some fish could have been in the river for a few months. The implications of these findings for fishery management and conservation are discussed.

Inferring age from otolith measurements: a review and a new approach

2004 ◽  
Vol 61 (7) ◽  
pp. 1269-1284 ◽  
Author(s):  
RIC Chris Francis ◽  
Steven E Campana
Keyword(s):  
Simulation Experiment ◽  
Cost Benefit Analysis ◽  
Cost Benefit ◽  
New Method ◽  
Population Parameters ◽  
Benefit Analysis ◽  
Mixture Analysis ◽  
New Approach ◽  
Individual Fish ◽  
The Cost

In 1985, Boehlert (Fish. Bull. 83: 103–117) suggested that fish age could be estimated from otolith measurements. Since that time, a number of inferential techniques have been proposed and tested in a range of species. A review of these techniques shows that all are subject to at least one of four types of bias. In addition, they all focus on assigning ages to individual fish, whereas the estimation of population parameters (particularly proportions at age) is usually the goal. We propose a new flexible method of inference based on mixture analysis, which avoids these biases and makes better use of the data. We argue that the most appropriate technique for evaluating the performance of these methods is a cost–benefit analysis that compares the cost of the estimated ages with that of the traditional annulus count method. A simulation experiment is used to illustrate both the new method and the cost–benefit analysis.

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