scholarly journals Genetic relationships amongNeisseria gonorrhoeaeserovars analysed by multilocus enzyme electrophoresis

1992 ◽  
Vol 108 (1) ◽  
pp. 31-38 ◽  
Author(s):  
C. L. Poh ◽  
J. C. Ocampo ◽  
G. K. Loh
Keyword(s):  
Genetic Diversity ◽  
Neisseria Gonorrhoeae ◽  
Genetic Relatedness ◽  
Genetic Relationships ◽  
Electrophoretic Analysis ◽  
Enzyme Electrophoresis ◽  
Enzyme Locus ◽  
Multilocus Enzyme Electrophoresis ◽  
Enzyme Loci ◽  
The Mean

Multilocus enzyme electrophoretic analysis was employed to assess the genetic relatedness ofNeisseria gonorrhoeae. Based on the diversity of electromorphs at 9 enzyme loci, 16 electrophoretic types (ETs) were estabilished amongst the 65 isolates. The average number of alleles per enzyme locus was 1·7 and the mean genetic diversity per locus was 0·212. The majority of isolates belonged to either ET1 (32·3%) or ET2 (16·9%). No specific correlation of ETs was seen with serovars as the major types, ETs 1 and 2, were found distributed amongst the various serovars. Major serovars such as Bacjk (IB-1/2) and Bajk (IB-3/6) were each represented by 6 or 8 ETs respectively. Analysis of the genetic relationships of ETs to each other showed some clustering of subgroups that were more closely related than others.

scholarly journals Genetic characterization ofMycobacterium aviumisolates recovered from humans and animals in Australia

1996 ◽  
Vol 116 (1) ◽  
pp. 41-49 ◽  
Author(s):  
M. M. Feizabadi ◽  
I. D. Robertson ◽  
D. V. Cousins ◽  
D. Dawson ◽  
W. Chew ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Mycobacterium Avium ◽  
Gel Electrophoresis ◽  
Genetic Characterization ◽  
Genetic Relationships ◽  
Pulsed Field Gel Electrophoresis ◽  
Pfge Type ◽  
Enzyme Electrophoresis ◽  
Pulsed Field ◽  
Multilocus Enzyme Electrophoresis

SummaryGenetic relationships amongst 115 mainly Australian isolates ofMycobacterium aviumwere assessed using multilocus enzyme electrophoresis (MEE). The isolates were divided into 58 electrophoretic types (ETs), with a mean genetic diversity of 0·29. Isolates from humans were closely related to but distinct from those cultured from birds, whilst some porcine isolates belonged to the same ETs as certain human isolates. Pulsed field gel electrophoresis (PFGE) was used to differentiate related isolates, and those from birds and some from other animals, including pigs, were distinguished from the human isolates. The results of MEE and PFGE suggested that certain strains ofM. aviummay be transmitted between birds and pigs, but there was no clear evidence of transmission to humans. The serovar of theM. aviumisolates was not obviously related to their ET assignment or their PFGE type.

scholarly journals Genetic analysis ofEscherichia colifrom porcine postweaning diarrhoea

1993 ◽  
Vol 110 (3) ◽  
pp. 575-581 ◽  
Author(s):  
D. J. Hampson ◽  
J. M. Woodward ◽  
I. D. Connaughton
Keyword(s):  
Escherichia Coli ◽  
Genetic Diversity ◽  
Genetic Analysis ◽  
Genetic Heterogeneity ◽  
Enzyme Electrophoresis ◽  
Enzyme Locus ◽  
Multilocus Enzyme Electrophoresis ◽  
Serotype O

SUMMARYA total of 79 Australian isolates of beta-haemolyticEscherichia colifrom cases of porcine postweaning diarrhoea (PWD), and 18 isolates of serotype O 149:K91:K88 (F4) from unweaned pigs from Australia, Indonesia and Denmark, were examined by multilocus enzyme electrophoresis. These were divided into 57 electrophoretic types (ETs), with an overall mean genetic diversity per enzyme locus of 0·466. This value closely resembled that previously recorded for the whole species. Not only was the collection diverse, but there was considerable genetic heterogeneity amongst PWD isolates of the same serogroup. Isolates from serogroups O 8 and O 138 were most varied, whilst many from serogroups O 141 and O 149 were more closely related. In contrast, the isolates from the unweaned pigs all belonged to only one ET.

scholarly journals Clonal Population Structure of Pseudomonas stutzeri, a Species with Exceptional Genetic Diversity

2001 ◽  
Vol 183 (2) ◽  
pp. 736-744 ◽  
Author(s):  
Núria Rius ◽  
M. Carme Fusté ◽  
Caterina Guasp ◽  
Jorge Lalucat ◽  
José G. Lorén
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Genetic Relationships ◽  
Bacterial Species ◽  
Pseudomonas Stutzeri ◽  
Null Alleles ◽  
Enzyme Electrophoresis ◽  
Single Strain ◽  
Multilocus Enzyme Electrophoresis ◽  
Clonal Population Structure

ABSTRACT Genetic diversity and genetic relationships among 42Pseudomonas stutzeri strains belonging to several genomovars and isolated from different sources were investigated in an examination of 20 metabolic enzymes by multilocus enzyme electrophoresis analysis. Forty-two distinct allele profiles were identified, indicating that all multilocus genotypes were represented by a single strain. All 20 loci were exceptionally polymorphic, with an average of 15.9 alleles per locus. To the best of our knowledge, thisP. stutzeri sample exhibited the highest mean genetic diversity (H = 0.876) found to date in all bacterial species studied by multilocus enzyme electrophoresis. A high frequency of occurrence of null alleles was identified. The index of association (IA ) for the P. stutzeri strains analyzed was 1.10. The IA values were always significantly different from zero for all subgroups studied, including clinical and environmental isolates and strains classified as genomovar 1. These results suggest that the population structure of P. stutzeri is strongly clonal, indicating that there is no significant level of assortative recombination that might destroy linkage disequilibrium.

The panmictic nature ofNeisseria meningitidisserogroup B during a period of endemic disease in Canada

2001 ◽  
Vol 47 (4) ◽  
pp. 283-289 ◽  
Author(s):  
Fraser E Ashton ◽  
Dominique A Caugant
Keyword(s):  
Genetic Diversity ◽  
Cluster Analysis ◽  
Neisseria Meningitidis ◽  
Meningococcal Disease ◽  
Enzyme Electrophoresis ◽  
Endemic Disease ◽  
Multilocus Enzyme Electrophoresis ◽  
Common Serotypes ◽  
The Mean ◽  
Group B

Three hundred and one (301) strains of Neisseria meningitidis serogroup B, isolated from patients with meningococcal disease during the years 1994–1996, were subjected to multilocus enzyme electrophoresis, serotyping, and serosubtyping. Based on the analyses of 14 enzyme loci, 177 electrophoretic types (ETs) were identified. Of these, 136 were represented by single isolates and 41 were represented by multiple isolates (range 2–31). The mean genetic diversity for isolates was 0.444 and for ETs was 0.440. The index of association (IA) between loci was 0.530 ± 0.08 for isolates and 0.256 ± 0.10 for ETs. Cluster analysis revealed the presence of 39 lineages each represented by a single ET or clusters of ETs. The most common serotypes were 4, 15, and 14 and accounted for 84 (28.0%), 53 (17.6%), and 32 (10.6%) of the isolates, respectively, and were dispersed amongst 46 ETs (1–122), 35 ETs (3–165), and 26 ETs (18–76), respectively. The 109 (36.6%) nontypable (NT) isolates were amongst 74 ETs (6–177). The mean genetic diversity for serotypes 4, 15, and 14 and NT isolates was 0.368, 0.371, 0.343, and 0.442, respectively, and for ETs was 0.363, 0.354, 0.397, and 0.440, respectively. Combinations of serotypes and serosubtypes (number of isolates) that occurred most frequently were 4:P1.14 (17), 14:P1.16 (16), NT:P1.16 (16), 15:P1.16 (13), and NT:P1.13 (13). The majority of group B disease in Canada during 1994–1996 was caused by meningococci of considerable genetic diversity, and reflects a situation of endemic disease. However, the results also indicate that organisms belonging to the ET-5 complex, which has been responsible for outbreaks of group B disease globally for several decades, have been introduced into the country.Key words: meningococcal, genotypes, serotypes, serosubtypes, Neisseria meningitidis.

Clonal population structure of Pseudomonas avellanae strains of different origin based on multilocus enzyme electrophoresis

Microbiology ◽  
2003 ◽  
Vol 149 (10) ◽  
pp. 2891-2900 ◽  
Author(s):  
Marco Scortichini ◽  
Emanuela Natalini ◽  
Luca Angelucci
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Pseudomonas Syringae ◽  
Polymorphic Locus ◽  
Genetic Relationships ◽  
Central Italy ◽  
Geographic Origin ◽  
Enzyme Electrophoresis ◽  
Northern Greece ◽  
Multilocus Enzyme Electrophoresis

To assess the genetic diversity and genetic relationships of Pseudomonas avellanae, the causative agent of hazelnut decline, a total of 102 strains, obtained from central Italy (provinces of Viterbo and Rome) and northern Greece, were studied using multilocus enzyme electrophoresis (MLEE). Their allelic variation in 10 loci was determined. All loci were polymorphic and 53 electrophoretic types (ETs) were identified from the total sample. The mean genetic diversity (H) was 0·65 and this value ranged from 0·37 for the least polymorphic to 0·82 for the most polymorphic locus. The dendrogram originated from MLEE data indicated two main groups of ETs, A and B. The groups do not appear to be correlated to the geographic origin of the strains, although all the ETs from northern Greece clustered into subgroup B1. Pseudomonas syringae pv. actinidiae and P. syringae pv. theae, included in the analysis as outgroups, clustered apart. The index of association (I A) for P. avellanae was 0·90. The I A values were always significantly different from zero for the population subsets studied and no epidemic structure was found. These results would indicate that the population structure of P. avellanae is clonal either in northern Greece or in central Italy. The recent outbreaks of the bacterium in new areas of hazelnut cultivation would explain the current clonal structure that is persisting over decades.

scholarly journals Characterization of Urease-Positive Thermophilic Campylobacter Subspecies by Multilocus Enzyme Electrophoresis Typing

2003 ◽  
Vol 69 (6) ◽  
pp. 3308-3310 ◽  
Author(s):  
Motoo Matsuda ◽  
Aki Kaneko ◽  
Timothy Stanley ◽  
B. Cherie Millar ◽  
M. Miyajima ◽  
...  
Keyword(s):  
Allelic Variation ◽  
Enzyme Electrophoresis ◽  
Multilocus Enzyme Electrophoresis ◽  
Thermophilic Campylobacter ◽  
Variation Data ◽  
Quantitative Analyses ◽  
The Mean ◽  
Campylobacter Lari ◽  
Reference Strains

ABSTRACT Thirty-one urease-positive thermophilic Campylobacter (UPTC) isolates, including three reference strains (NCTC12892, NCTC12895 and NCTC12896), and three Campylobacter lari isolates, which were isolated from several countries and sources, were compared genotypically by using multilocus enzyme electrophoresis (MLEE). We examined allelic variation around seven enzyme loci, including the adenylate kinase, alkaline phosphatase, catalase, fumarase, malic enzyme, malate dehydrogenase, and l-phenylalanyl-l-leucine peptidase loci. MLEE typing revealed the presence of 23 different electrophoretic types (ETs) among the 31 UPTC isolates, and 14 isolates shared six electrophoretic profiles. Three different ETs were identified for the three C. lari isolates examined, and no ETs were shared by UPTC and C. lari isolates. Quantitative analyses were subsequently performed by using allelic variation data, and the results demonstrated that the mean genetic diversity was 0.655. In conclusion, MLEE demonstrated that the UPTC isolates examined are genetically hypervariable and form a cluster separate from the C. lari cluster.

Sign in / Sign up

Export Citation Format

Share Document