MORPHOMUSEUM: AN ONLINE PLATFORM FOR PUBLICATION AND STORAGE OF VIRTUAL SPECIMENS

2016 ◽  
Vol 22 ◽  
pp. 183-195 ◽  
Author(s):  
Renaud Lebrun ◽  
Maëva J. Orliac
Keyword(s):  
Review Process ◽  
Scientific Journal ◽  
Three Dimensional ◽  
Digital Data ◽  
Morphological Data ◽  
Computer Assisted ◽  
Scientific Journals ◽  
Unique Identifier ◽  
Scientific Publications ◽  
And Storage

AbstractSince the early 1990s, methods for the acquisition of three-dimensional (3-D) data and computer-assisted techniques for the visualization of such data have grown increasingly popular among biologists, paleontologists, and paleoanthropologists. However, thus far no standardized repository for complex virtual models based on 3-D digital data of specimens has emerged, whereas the need for researchers to provide access to 3-D models of specimens as well as the pressure imposed on authors by scientific journals to make original 3-D morphological data publicly available have increased. MorphoMuseuM (M3) aims to fill this gap. M3 is both a peer-reviewed scientific journal (M3 Journal) and a virtual specimen repository (M3 Repository). All scientific articles and their associated 3-D models deposited in M3 go through a formal review process. Each published model is given a DOI and a unique identifier code, which should be cited by researchers using this model in their scientific publications. In this paper, we describe the place of M3 among other online repositories for 3-D data, and explain how the growing community of biologists working with 3-D data can benefit from using M3.

Judges and defendants

2018 ◽  
Author(s):  
Gianfranco Pacchioni
Keyword(s):  
Peer Review ◽  
Review Process ◽  
Social Cost ◽  
Peer Review Process ◽  
Scientific Journals ◽  
Scientific Publications ◽  
Contemporary Science ◽  
The Social ◽  
Pros And Cons ◽  
Scientific Publishers

This chapter explores how validation of new results works in science. It also looks at the peer-review process, both pros and cons, as well as scientific communication, scientific journals, and scientific publishers. We give an assessment of the total number of existing journals with peer review. Other topics discussed include the phenomenon of open access, predatory journals and their impact on contemporary science, and the market of scientific publications. Finally, we touch on degenerative phenomena, such as the market of co-authors, bogus papers, and irrelevant and wrong studies, as well as the problem and the social cost of irreproducible results.

scholarly journals Strategic on Management Scientific Publication of Student Journal in Higher Education (a Case Study)

2017 ◽  
Vol 8 (3) ◽  
pp. 41-54
Author(s):  
Muhammad Qomaruddin ◽  
Ratih Nur Pratiwi ◽  
Sarwono Sarwono
Keyword(s):  
Higher Education ◽  
Scientific Journal ◽  
Journal Ranking ◽  
Index Number ◽  
Scientific Journals ◽  
Electronic Journals ◽  
Scientific Publications ◽  
Journal Publishing ◽  
Journal Publications ◽  
The Impact

AbstractThe current publication of scientific journals is transitioning from a print format format to an electronic format, which has a different management model than before. Publication of scientific journals is an important thing in the existence of universities. In the dissemination of science results of an education, research, and community service generated by college civitas (Students & Lecturers) can be done with the publication of scientific journals. The purpose of this study is to determine the strategy of management publication of scientific journals that publish many articles of students at higher education. The type of this research is qualitative descriptive research. The research data were collected by indepth interview the Director of Graduate, Head of journal publishing unit, and staff of journal publishing unit. This research was conducted at the Journal Publishing Unit of Postgraduate of Brawijaya University. The managers of scientific journal publications should be continue to improve scientific publishing services and the quality of published articles, so that the management of scientific publications can compete with other electronic journals. The development of electronic journals in Indonesia has grown rapidly, within three years of electronic journal publication in Indonesia has increased sharply, from 1500 journals in 2012 to 16280 journals in 2016. This is a challenge for managers of scientific publications in Brawijaya University. The strategy in developing the management of scientific journal publications of students is to hold training activities of scientific journal writing for students to be able to provide the availability of quality articles. Benchmarking activities and management training for journal editing teams to maintain quality management and scientific journal publications. In addition, it is necessary to improve the reputation of scientific journals by paying attention to the Impact Factor; Index Journal, Ranking Journal, h-index, Number of Cites, & Percentage of Rejection Rates in managed journals.

scholarly journals The effects of an editor serving as one of the reviewers during the peer-review process

F1000Research ◽  
2016 ◽  
Vol 5 ◽  
pp. 683 ◽  
Author(s):  
Marco Giordan ◽  
Attila Csikasz-Nagy ◽  
Andrew M. Collings ◽  
Federico Vaggi
Keyword(s):  
Peer Review ◽  
Review Process ◽  
Peer Review Process ◽  
Final Decision ◽  
Scientific Journals ◽  
Scientific Publications ◽  
Peer Reviewers ◽  
Decision Type ◽  
Number Of Citations ◽  
Decision Times

BackgroundPublishing in scientific journals is one of the most important ways in which scientists disseminate research to their peers and to the wider public. Pre-publication peer review underpins this process, but peer review is subject to various criticisms and is under pressure from growth in the number of scientific publications.MethodsHere we examine an element of the editorial process ateLife, in which the Reviewing Editor usually serves as one of the referees, to see what effect this has on decision times, decision type, and the number of citations. We analysed a dataset of 8,905 research submissions toeLifesince June 2012, of which 2,750 were sent for peer review, using R and Python to perform the statistical analysis.ResultsThe Reviewing Editor serving as one of the peer reviewers results in faster decision times on average, with the time to final decision ten days faster for accepted submissions (n=1,405) and 5 days faster for papers that were rejected after peer review (n=1,099). There was no effect on whether submissions were accepted or rejected, and a very small (but significant) effect on citation rates for published articles where the Reviewing Editor served as one of the peer reviewers.ConclusionsAn important aspect ofeLife’s peer-review process is shown to be effective, given that decision times are faster when the Reviewing Editor serves as a reviewer. Other journals hoping to improve decision times could consider adopting a similar approach.

scholarly journals The effects of an editor serving as one of the reviewers during the peer-review process

F1000Research ◽  
2016 ◽  
Vol 5 ◽  
pp. 683 ◽  
Author(s):  
Marco Giordan ◽  
Attila Csikasz-Nagy ◽  
Andrew M. Collings ◽  
Federico Vaggi
Keyword(s):  
Peer Review ◽  
Review Process ◽  
Peer Review Process ◽  
Final Decision ◽  
Scientific Journals ◽  
Scientific Publications ◽  
Peer Reviewers ◽  
Decision Type ◽  
Number Of Citations ◽  
Decision Times

BackgroundPublishing in scientific journals is one of the most important ways in which scientists disseminate research to their peers and to the wider public. Pre-publication peer review underpins this process, but peer review is subject to various criticisms and is under pressure from growth in the number of scientific publications.MethodsHere we examine an element of the editorial process ateLife, in which the Reviewing Editor usually serves as one of the referees, to see what effect this has on decision times, decision type, and the number of citations. We analysed a dataset of 8,905 research submissions toeLifesince June 2012, of which 2,747 were sent for peer review. This subset of 2747 papers was then analysed in detail.  ResultsThe Reviewing Editor serving as one of the peer reviewers results in faster decision times on average, with the time to final decision ten days faster for accepted submissions (n=1,405) and five days faster for papers that were rejected after peer review (n=1,099). Moreover, editors acting as reviewers had no effect on whether submissions were accepted or rejected, and a very small (but significant) effect on citation rates.ConclusionsAn important aspect ofeLife’s peer-review process is shown to be effective, given that decision times are faster when the Reviewing Editor serves as a reviewer. Other journals hoping to improve decision times could consider adopting a similar approach.

scholarly journals AN INITIAL DESIGN FRAMEWORK FOR VIRTUAL HISTORIC DUBLIN

2019 ◽  
Vol XLII-2/W11 ◽  
pp. 901-907
Author(s):  
M. Murphy ◽  
S. Pavia ◽  
J. Cahill ◽  
S. Lenihan ◽  
A. Corns
Keyword(s):  
Data Base ◽  
Open Systems ◽  
Three Dimensional ◽  
Digital Design ◽  
Conservation Education ◽  
Digital Data ◽  
Design Framework ◽  
Knowledge Attributions ◽  
Heritage Buildings ◽  
And Storage

<p><strong>Abstract.</strong> As a single coherent model, the proposed Virtual Historic Dublin City will improve the current approaches for planning, conserving, presenting and interpreting cultural heritage buildings and their environments. The combination of digital recording, modelling and data management systems enable the interaction with complex, interlinked three-dimensional structures containing rich and diverse underlying data. End users can encompass architectural and engineering conservation, education and research, in addition to public engagement and cultural tourism. In this paper a digital design framework is presented, based on state of the art current approaches for recording, modelling and presenting Virtual Historic Dublin. The modelling sites and structures is based on remotely sensed survey data which is processed and modelled in Historic BIM or GIS allowing the addition of semantic attributes. Archiving and storage of both models and knowledge and information attributes requires open systems and server data base capable of handling vector and point cloud information in addition to other digital data. The dissemination and interaction with the models and attached knowledge attributions is based on combining game engine platforms, Historic BIM, Historic GIS and access to compatible storage and data base.</p>

Constructing a Three-Dimensional Resource Database of Plants Using Measured in situ Morphological Data

2017 ◽  
Vol 33 (6) ◽  
pp. 747-756 ◽  
Author(s):  
Weiliang Wen ◽  
Xinyu Guo ◽  
Yongjian Wang ◽  
Chunjiang Zhao ◽  
Weihua Liao
Keyword(s):  
Data Acquisition ◽  
Agricultural Research ◽  
Three Dimensional ◽  
Point Clouds ◽  
Digital Data ◽  
Morphological Data ◽  
Fertilizer Treatment ◽  
Imaging Features ◽  
Plant Modeling ◽  
3D Point Clouds

Abstract. 3D modeling of plants forms the basis of functional-structural plant modeling (FSPM) and digital plant research, and also plays an important role in research on plant phenotypes and germplasm resource protection. To provide high fidelity 3D models with complete agronomic information for research and applications, this study constructed a 3D visual database of plants. First, measured morphological data that included 3D digital data, 3D point clouds, and texture mapping images were acquired for different precision requirements. To set unified access rules for the database, a standard for the morphological data acquisition of plants was proposed. This data acquisition standard directs how 3D digital data, 3D point clouds, and texture imaging features of organs and plants are acquired. It also specifies the agronomic information that must be collected to guarantee the completeness of the morphological data record, such as the plant cultivar, growth period, planting density, water, and fertilizer treatment. Next, geometric models of plants and organs were generated using parametric plant modeling methods and geometric modeling based on point clouds using the acquired data. Finally, a plant 3D resource database was constructed by selecting those plant resources that contained two classes of database keywords: agronomy attribute keywords and 3D attribute keywords. The database contains a large number of plant models of different species, cultivars, and multiple growth periods with agronomic parameters and a high level of detail. The creation of such a database promotes the role of digital plant records in agricultural research and production. Keywords: Agricultural research, Agronomic parameters, Database, Geometric model, Morphology, Plants, Three-dimensional data.

scholarly journals Beyond the print—virtual paleontology in science publishing, outreach, and education

2014 ◽  
Vol 88 (4) ◽  
pp. 727-734 ◽  
Author(s):  
Stephan Lautenschlager ◽  
Martin Rücklin
Keyword(s):  
Public Engagement ◽  
Three Dimensional ◽  
Cost Effective ◽  
Digital Data ◽  
Computational Techniques ◽  
Digital Information ◽  
Qr Codes ◽  
Scientific Publications ◽  
Innovative Resources ◽  
Outreach And Education

Virtual paleontology unites a variety of computational techniques and methods for the visualization and analysis of fossils. Due to their great potential and increasing availability, these methods have become immensely popular in the last decade. However, communicating the wealth of digital information and results produced by the various techniques is still exacerbated by traditional methods of publication. Transferring and processing three-dimensional information, such as interactive models or animations, into scientific publications still poses a challenge. Here, we present different methods and applications to communicate digital data in academia, outreach and education. Three-dimensional PDFs, QR codes, anaglyph stereo imaging, and rapid prototyping—methods routinely used in the engineering, entertainment, or medical industries—are outlined and evaluated for their potential in science publishing and public engagement. Although limitations remain, these are simple, mostly cost-effective, and powerful tools to create novel and innovative resources for education, public engagement, or outreach.

Computer-assisted designing and biofabrication of 3-D hydrogel structures towards thick 3-D tissue engineering

2012 ◽  
Vol 1415 ◽  
Author(s):  
Makoto Nakamura ◽  
Kenichi Arai ◽  
Hideki Toda ◽  
Shintaroh Iwanaga ◽  
Kozo Ito ◽  
...  
Keyword(s):  
Tissue Engineering ◽  
Three Dimensional ◽  
Image Data ◽  
Honeycomb Structure ◽  
Digital Data ◽  
Computer Assisted ◽  
Alginate Hydrogel ◽  
Cell Printing ◽  
Custom Made ◽  
Direct Cell

ABSTRACTEngineering and manufacturing of thick and bio-functional tissue products is one of the big issues in tissue engineering. To produce such tissues, we need some innovative technologies, which enable us to build up thick, three-dimensional structures and to arrange multiple types of cells to make complicated tissue structures. Based on such considerations, we have developed a custom-made inkjet 3D bioprinter, which realized both of direct cell printing and 3D laminating printing with cells and hydrogel. Recently, it has been improved, and here we report recent progresses and our achievements with new version 3D bioprinter.Image based printing mode and active Z-axis control system were added. As a useful structure, an image of multi-honeycomb pattern was designed in computer and next it was copied and finally in total 100 image data were prepared. Using those digital data, 3D image of thick multi-honeycomb structure was reconstructed in computer, and then, laminating printing was carried out using our new version 3D bioprinter with alginate hydrogel. The new version printer showed good performance of 3D laminating printing and finally complicated 3D multi-honeycomb hydrogel structures could be successfully fabricated. It is indicated that fabrication of cell containing 3D structures based on the computer aided designs is feasible and that such biofabrication technologies must contribute to further innovative advancement of tissue engineering.

Scanning electron microscopy of freeze-fractured prescapular lymph node of caprine

1984 ◽  
Vol 42 ◽  
pp. 244-245
Author(s):  
O. Faroon ◽  
F. Al-Bagdadi ◽  
T. G. Snider ◽  
C. Titkemeyer
Keyword(s):  
Lymph Node ◽  
Lymph Nodes ◽  
Lymphatic System ◽  
Three Dimensional ◽  
Meat Products ◽  
The Body ◽  
Morphological Data ◽  
The World ◽  
Cellular Constituent ◽  
Scanning Electron

The lymphatic system is very important in the immunological activities of the body. Clinicians confirm the diagnosis of infectious diseases by palpating the involved cutaneous lymph node for changes in size, heat, and consistency. Clinical pathologists diagnose systemic diseases through biopsies of superficial lymph nodes. In many parts of the world the goat is considered as an important source of milk and meat products.The lymphatic system has been studied extensively. These studies lack precise information on the natural morphology of the lymph nodes and their vascular and cellular constituent. This is due to using improper technique for such studies. A few studies used the SEM, conducted by cutting the lymph node with a blade. The morphological data collected by this method are artificial and do not reflect the normal three dimensional surface of the examined area of the lymph node. SEM has been used to study the lymph vessels and lymph nodes of different animals. No information on the cutaneous lymph nodes of the goat has ever been collected using the scanning electron microscope.

Control of Secretory Production in the Isopod Hepatopancreas

1972 ◽  
Vol 30 ◽  
pp. 166-167
Author(s):  
John W. Roberts ◽  
E. R. Witkus
Keyword(s):  
B Cells ◽  
Morphological Data ◽  
Secretory Product ◽  
Secretory Function ◽  
Secretory Material ◽  
Blind Ending ◽  
Secretory Production ◽  
Regenerative Cells ◽  
Immature Cells ◽  
And Storage

The isopod hepatopancreas, as exemplified by Oniscus ascellus. is comprised of four blind-ending diverticula. The regenerative cells at the tip of each diverticula differentiate into either club-shaped B-cells, which serve a secretory function, or into conoid S-cells, which serve in the absorption and storage of nutrients.The glandular B-cells begin producing secretory material with the development of rough endoplasmic reticulum during their process of maturation from the undifferentiated regenerative cells. Cytochemical and morphological data indicate that the hepatopancreas sequentially produces two types of secretory material within the large club-shaped cells. The production of the carbohydrate-like secretory product in immature cells seems to be phased out as the production of the osmiophilic secretion was phased in as the cell matured.

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