scholarly journals Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Shingo Miyauchi ◽  
Enikő Kiss ◽  
Alan Kuo ◽  
Elodie Drula ◽  
Annegret Kohler ◽  
...  
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Transposable Elements ◽  
Genome Sequencing ◽  
Mycorrhizal Fungi ◽  
Large Scale ◽  
Terrestrial Ecosystems ◽  
Pathogenic Species ◽  
Fungal Genomes ◽  
Induced Genes

Abstract Mycorrhizal fungi are mutualists that play crucial roles in nutrient acquisition in terrestrial ecosystems. Mycorrhizal symbioses arose repeatedly across multiple lineages of Mucoromycotina, Ascomycota, and Basidiomycota. Considerable variation exists in the capacity of mycorrhizal fungi to acquire carbon from soil organic matter. Here, we present a combined analysis of 135 fungal genomes from 73 saprotrophic, endophytic and pathogenic species, and 62 mycorrhizal species, including 29 new mycorrhizal genomes. This study samples ecologically dominant fungal guilds for which there were previously no symbiotic genomes available, including ectomycorrhizal Russulales, Thelephorales and Cantharellales. Our analyses show that transitions from saprotrophy to symbiosis involve (1) widespread losses of degrading enzymes acting on lignin and cellulose, (2) co-option of genes present in saprotrophic ancestors to fulfill new symbiotic functions, (3) diversification of novel, lineage-specific symbiosis-induced genes, (4) proliferation of transposable elements and (5) divergent genetic innovations underlying the convergent origins of the ectomycorrhizal guild.

Accumulation patterns of soil organic matter in forests as a legacy of historical charcoal burning

2021 ◽  
Author(s):  
Anna Schneider ◽  
Alexander Bonhage ◽  
Florian Hirsch ◽  
Alexandra Raab ◽  
Thomas Raab
Keyword(s):  
Land Use ◽  
Organic Matter ◽  
Soil Organic Matter ◽  
Large Scale ◽  
Soil Surface ◽  
Landscape Scale ◽  
Legacy Effects ◽  
Charcoal Production ◽  
Study Region ◽  
Land Use Legacies

<p>Human land use and occupation often lead to a high heterogeneity of soil stratigraphy and properties in landscapes within small, clearly delimited areas. Legacy effects of past land use also are also abundant in recent forest areas. Although such land use legacies can occur on considerable fractions of the soil surface, they are hardly considered in soil mapping and inventories. The heterogenous spatial distribution of land use legacy soils challenges the quantification of their impacts on the landscape scale. Relict charcoal hearths (RCH) are a widespread example for the long-lasting effect of historical land use on soil landscapes in forests of many European countries and also northeastern USA. Soils on RCH clearly differ from surrounding forest soils in their stratigraphy and properties, and are most prominently characterized by a technogenic substrate layer with high contents of charcoal. The properties of RCH soils have recently been studied for several regions, but their relevance on the landscape scale has hardly been quantified.</p><p>We analyse and discuss the distribution and ecological relevance of land use legacy soils across scales for RCH in the state of Brandenburg, Germany, with a focus on soil organic matter (SOM) stocks. Our analysis is based on a large-scale mapping of RCH from digital elevation models (DEM), combined with modelled SOM stocks in RCH soils. The distribution of RCH soils in the study region shows heterogeneity at different scales. The large-scale variation is related to the concentration of charcoal production to specific forest areas and the small-scale accumulation pattern is related to the irregular distribution of single RCH within the charcoal production fields. Considerable fractions of the surface area are covered by RCH soils in the major charcoal production areas within the study region. The results also show that RCH can significantly contribute to the soil organic matter stocks of forests, even for areas where they cover only a small fraction of the soil surface. The study highlights that considering land use legacy effects can be relevant for the results of soil mapping and inventories; and that prospecting and mapping land use legacies from DEM can contribute to improving such approaches.</p>

scholarly journals Glomalin – an interesting protein part of the soil organic matter

2020 ◽  
Vol 15 (No. 2) ◽  
pp. 67-74 ◽  
Author(s):  
Vítězslav Vlček ◽  
Miroslav Pohanka
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Arbuscular Mycorrhiza ◽  
Mycorrhizal Fungi ◽  
Biological Diversity ◽  
Agricultural Practices ◽  
Arbuscular Mycorrhizal ◽  
Fulvic Acids ◽  
Soil Parameters ◽  
Citrate Buffer

The negative effects of the current agricultural practices include erosion, acidification, loss of soil organic matter (dehumification), loss of soil structure, soil contamination by risky elements, reduction of biological diversity and land use for non-agricultural purposes. All these effects are a huge risk to the further development of soil quality from an agronomic point of view and its resilience to projected climate change. Organic matter has a crucial role in it. Relatively significant correlations with the quality or the health of soil parameters and the soil organic matter or some fraction of the soil organic matter have been found. In particular, Ctot, Cox, humic and fulvic acids, the C/N ratio, and glomalin. Our work was focused on glomalin, a glycoprotein produced by the hyphae and spores of arbuscular mycorrhizal fungi (AMF), which we classify as Glomeromycota. Arbuscular mycorrhiza, and its molecular pathways, is not a well understood phenomenon. It appears that many proteins are involved in the arbuscular mycorrhiza from which glomalin is probably one of the most significant. This protein is also responsible for the unique chemical and physical properties of soils and has an ecological and economical relevance in this sense and it is a real product of the mycorrhiza. Glomalin is very resistant to destruction (recalcitrant) and difficult to dissolve in water. Its extraction requires specific conditions: high temperature (121°C) and a citrate buffer with a neutral or alkaline pH. Due to these properties, glomalin (or its fractions) are very stable compounds that protect the soil aggregate surface. In this review, the actual literature has been researched and the importance of glomalin is discussed.  

Fitting plants to soil through mycorrhizal fungi: Mycorrhiza effects on plant growth and soil organic matter

1993 ◽  
Vol 15 (2) ◽  
pp. 103-106 ◽  
Author(s):  
M. Quintero-Ramos ◽  
D. Espinoza-Victoria ◽  
R. Ferrera-Cerrato ◽  
G. J. Bethlenfalvay
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Plant Growth ◽  
Mycorrhizal Fungi

scholarly journals Ecohydrological effectiveness of litter crusts in sandy ecosystem

2018 ◽  
Author(s):  
Yu Liu ◽  
Zeng Cui ◽  
Ze Huang ◽  
Hai-Tao Miao ◽  
Gao-Lin Wu
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Organic Matter Content ◽  
Terrestrial Ecosystems ◽  
Infiltration Rate ◽  
High Water ◽  
Matter Content ◽  
Water Infiltration ◽  
Desert Ecosystems ◽  
Positive Effects

Abstract. Litter crusts are integral components of the water budget in terrestrial ecosystems, especially in arid areas. This innovative study is to quantify the ecohydrological effectiveness of litter crusts in desert ecosystems. We focus on the positive effects of litter crusts on soil water holding capacity and water interception capacity compared with biocrusts. Litter crusts significantly increased soil organic matter, which was 2.4 times the content in biocrusts and 3.84 times the content in bare sandy lands. Higher organic matter content resulted in increased soil porosity and decreased soil bulk density. Meanwhile, soil organic matter can help to maintain maximum infiltration rates. Litter crusts significantly increased the water infiltration rate under high water supply. Our results suggested that litter crusts significantly improve soil properties, thereby influencing hydrological processes. Litter crusts play an important role in improving hydrological effectiveness and provide a microhabitat conducive to vegetation restoration in dry sandy ecosystem.

scholarly journals An Approach to Incorporate Rhizosphere Priming Effect into Soil Organic Matter Models

2021 ◽  
Author(s):  
Oleg Chertov ◽  
Yakov Kuzyakov ◽  
Irina Priputina ◽  
Pavel Frolov ◽  
Vladimir Shanin ◽  
...  
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Priming Effect ◽  
C:N Ratio ◽  
Target Function ◽  
Terrestrial Ecosystems ◽  
Model Verification ◽  
Mineral N ◽  
Soil System ◽  
Plant Soil

Abstract Purpose. This study is aimed to develop a model of priming effect (accelerated mineralisation of soil organic matter (SOM)) induced by root exudate input into nitrogen (N) limited rhizosphere soil as a typical case for most terrestrial ecosystems. This ecologically important process in the functioning of the “plant-soil” system was parameterized for temperate and boreal forests.Methods. A model of priming effect has been developed based on the concept of N mining to making up for the N scarcity in exudates by accelerating SOM mineralisation. Lacking N for microbial growth is mined from the SOM mineralisation considering C:N ratio of soil. The model has a built-in food web module, which calculates soil fauna feeding on microorganisms, the release of by-products of faunal metabolism and mineral N used for root uptake.Results. The model verification demonstrated the similar order of the priming effect as in the published experiments. Testing at the pedon level revealed a high sensitivity of the model to N content in root exudates. Testing of the model at the ecosystem level revealed that CO2 emission from the priming can reach 25–30% of CO2 emission from the whole Ah horizon of forest soil. The same intensities were simulated for the fauna-derived N released within the rhizosphere.Conclusion. The new model reflects important ecological consequences of the main target function of priming effects within the “plant – soil – microorganisms – fauna” system – the microbial acceleration of C and N cycling in the rhizosphere and detritusphere to mobilise mineral N for plants.

scholarly journals Sustainability of Impacts of Poplar Growth on Soil Organic Matter in Eutric Cambisols

Soil Systems ◽  
2019 ◽  
Vol 3 (2) ◽  
pp. 32
Author(s):  
Christel Baum ◽  
Martin Barth ◽  
Kathrin Henkel ◽  
Meike Siebers ◽  
Kai-Uwe Eckhardt ◽  
...  
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Mycorrhizal Fungi ◽  
Litter Quality ◽  
Phospholipid Fatty Acid ◽  
Microbial Colonization ◽  
Annual Crops ◽  
No Till ◽  
Poplar Growth

Short rotation coppices (SRC) with poplar on arable soils constitute no-till management in combination with a changed litter quality compared to annual crops. Both tillage and litter quality impact soil organic matter (SOM) composition, but little is known on the sustainability of this impact at the molecular level. We compared the microbial colonization and SOM quantity and quality of a young (4 years), old (17 years) and a former SRC with hybrid poplar (Populus maximoviczii × Populus nigra cv. Max) to adjacent arable sites with annual crops or grass. Total fungal and arbsucular mycorrhizal fungal phospholipid fatty acid (PLFA) markers were increased under no-till treatments with permanent crops (SRC and grass) compared to tilled cereals. Enrichments in fungal biomass coincided with C accumulation close to the soil surface (0–5 cm) but was abolished under former SRC after return to annual tillage. This management change altered the spatial distribution but not the accumulation of SOM within the topsoil (0–30 cm). However, lasting qualitative changes in SOM with increased proportions of lignin, lipids and sterols were found under current and former SRC. Increased colonization by arbuscular mycorrhizal fungi was correlated with increased invertase activity (R = 0.64; p < 0.05), carbohydrate consumption and a corresponding accumulation of lignins and lipids in the SOM. This link indicates a regulatory impact of mycorrhizal fungi on soil C dynamics by changing the quality of SOM. Increased stability of SOM to microbial degradation by higher portions of lipids and sterols in the SOM were assumed to be a sustainable effect of poplar growth at Eutric Cambisols.

Arbuscular mycorrhizal fungi contribute to 13C and 15N enrichment of soil organic matter in forest soils

2009 ◽  
Vol 41 (4) ◽  
pp. 858-861 ◽  
Author(s):  
Paulina Etcheverría ◽  
Dries Huygens ◽  
Roberto Godoy ◽  
Fernando Borie ◽  
Pascal Boeckx
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Arbuscular Mycorrhizal Fungi ◽  
Forest Soils ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
15N Enrichment

scholarly journals Differential effects of redox conditions on the decomposition of litter and soil organic matter

2020 ◽  
Author(s):  
Yang Lin ◽  
Ashley N. Campbell ◽  
Amrita Bhattacharyya ◽  
Nicole DiDonato ◽  
Allison M. Thompson ◽  
...  
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
High Resolution Mass Spectrometry ◽  
Terrestrial Ecosystems ◽  
Plant Litter ◽  
Redox Conditions ◽  
Co2 Production ◽  
Luquillo Experimental Forest ◽  
Soil Redox ◽  
Extractable Organic Matter

Abstract. Soil redox conditions exert substantial influence on biogeochemical processes in terrestrial ecosystems. Humid tropical forest soils are often characterized by fluctuating redox dynamics, yet how these dynamics affect patterns in soil versus litter decomposition and associated CO2 fluxes is not well understood. We used a 13C-labeled litter addition to explicitly follow the decomposition of litter-derived vs. native soil-derived organic matter in response to four different soil redox regimes – static oxic or anoxic, and two oscillating treatments – in soil from the Luquillo Experimental Forest, Puerto Rico. We coupled this incubation experiment with high-resolution mass spectrometry to characterize the preferential decomposition of specific classes of organic molecules. CO2 production from litter and soil organic matter (SOM) showed distinctly different responses to redox manipulation. The cumulative production of SOM-derived CO2 was positively correlated with the length of soil exposure to an oxic headspace (r = 0.89, n = 20), whereas cumulative 13C-litter-derived CO2 production was not linked to oxygen availability. The CO2 production rate from litter was highest under static anoxic conditions in the first half of the incubation period, and later dropped to the lowest among all redox treatments. In the consistently anoxic soils, we observed the depletion of more oxidized water-extractable organic matter (especially amino sugars, carbohydrates, and proteins) over time, suggesting that under anaerobic conditions, microbes preferentially used more oxidized litter-derived compounds during the early stages of decomposition. Results from kinetic modeling showed that more frequent anoxic exposure limited the decomposition of a slow-cycling C pool, but not a fast-cycling pool. Overall, our results demonstrate that substrate source – freshly added litter vs. native organic matter – plays an important role in the redox sensitivity of organic matter decomposition. In soil environments that regularly experience redox fluctuations, anaerobic heterotrophs can be surprisingly effective in degrading fresh plant litter.

Sign in / Sign up

Export Citation Format

Share Document