scholarly journals The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Kara Martin ◽  
Katrin Schmidt ◽  
Andrew Toseland ◽  
Chris A. Boulton ◽  
Kerrie Barry ◽  
...  
Keyword(s):  
Beta Diversity ◽  
Large Scale ◽  
Carbon Fixation ◽  
Upper Ocean ◽  
Geographic Differentiation ◽  
Eukaryotic Phytoplankton ◽  
Rdna Sequencing ◽  
Local Species ◽  
Break Points ◽  
Global Carbon

AbstractEukaryotic phytoplankton are responsible for at least 20% of annual global carbon fixation. Their diversity and activity are shaped by interactions with prokaryotes as part of complex microbiomes. Although differences in their local species diversity have been estimated, we still have a limited understanding of environmental conditions responsible for compositional differences between local species communities on a large scale from pole to pole. Here, we show, based on pole-to-pole phytoplankton metatranscriptomes and microbial rDNA sequencing, that environmental differences between polar and non-polar upper oceans most strongly impact the large-scale spatial pattern of biodiversity and gene activity in algal microbiomes. The geographic differentiation of co-occurring microbes in algal microbiomes can be well explained by the latitudinal temperature gradient and associated break points in their beta diversity, with an average breakpoint at 14 °C ± 4.3, separating cold and warm upper oceans. As global warming impacts upper ocean temperatures, we project that break points of beta diversity move markedly pole-wards. Hence, abrupt regime shifts in algal microbiomes could be caused by anthropogenic climate change.

scholarly journals Gut Microbiome in Psoriasis: An Updated Review

Pathogens ◽  
2020 ◽  
Vol 9 (6) ◽  
pp. 463
Author(s):  
Mariusz Sikora ◽  
Albert Stec ◽  
Magdalena Chrabaszcz ◽  
Aleksandra Knot ◽  
Anna Waskiel-Burnat ◽  
...  
Keyword(s):  
Gut Microbiome ◽  
Beta Diversity ◽  
Large Scale ◽  
Skin Diseases ◽  
Intestinal Barrier ◽  
Alpha Diversity ◽  
Current Data ◽  
Intestinal Microbiome ◽  
Microbial Composition ◽  
Alpha And Beta Diversity

(1) Background: A growing body of evidence highlights that intestinal dysbiosis is associated with the development of psoriasis. The gut–skin axis is the novel concept of the interaction between skin diseases and microbiome through inflammatory mediators, metabolites and the intestinal barrier. The objective of this study was to synthesize current data on the gut microbial composition in psoriasis. (2) Methods: We conducted a systematic review of studies investigating intestinal microbiome in psoriasis, using the PRISMA checklist. We searched MEDLINE, EMBASE, and Web of Science databases for relevant published articles (2000–2020). (3) Results: All of the 10 retrieved studies reported alterations in the gut microbiome in patients with psoriasis. Eight studies assessed alpha- and beta-diversity. Four of them reported a lack of change in alpha-diversity, but all confirmed significant changes in beta-diversity. At the phylum-level, at least two or more studies reported a lower relative abundance of Bacteroidetes, and higher Firmicutes in psoriasis patients versus healthy controls. (4) Conclusions: There is a significant association between alterations in gut microbial composition and psoriasis; however, there is high heterogeneity between studies. More unified methodological standards in large-scale studies are needed to understand microbiota’s contribution to psoriasis pathogenesis and its modulation as a potential therapeutic strategy.

Design, simulation and matched structure of a living ecological & energized modules (EEMs) bridge system

2021 ◽  
Author(s):  
XiangWen Xiong ◽  
Mingzi Wu
Keyword(s):  
Species Interactions ◽  
Carbon Capture ◽  
Clean Energy ◽  
General Interest ◽  
Ecosystem Integrity ◽  
Local Species ◽  
Zero Carbon ◽  
Almost All ◽  
Global Carbon ◽  
Bridge System

<p>This paper presents a novel ecological &amp; energized modules (EEMs) system for transportation and bridge systems. It has a general interest in almost all human living &amp; ecological systems, civil engineering, and infrastructure. As an underlying and fundamental system of zero energy, zero- water-consumption, and zero-carbon with a 100% greening rate and 100% clean energy, high- quality air, and powerful carbon capture system with significant positive spillover for global carbon removal and climate challenges, etc., the EEMs bridge system is easy, fast, efficient, and zero- dependence on the large complex equipment during the construction. It is applied to a wide variety of bridge systems, such as road bridges, footbridges, flyovers, and overpasses. It’s pollution-free, safe, noiseless, and can be used soon after paving, repairing, and re-laying. The EEMs bridge system has unique superiority in ecosystem integrity and connectivity, resulting in available consequences for global biodiversity, local species interactions, ecosystem integrity and connectivity.</p>

scholarly journals Evaluation of modeled global carbon dynamics: analysis based on global carbon flux and above-ground biomass data

2016 ◽  
Author(s):  
Bao-Lin Xue ◽  
Qinghua Guo ◽  
Tianyu Hu ◽  
Yongcai Wang ◽  
Shengli Tao ◽  
...  
Keyword(s):  
Spatial Patterns ◽  
Carbon Flux ◽  
Large Scale ◽  
Gross Primary Production ◽  
Carbon Dynamics ◽  
Global Scale ◽  
Above Ground Biomass ◽  
Carbon Cycles ◽  
Ground Biomass ◽  
Global Carbon

Abstract. Dynamic global vegetation models are useful tools for the simulation of carbon dynamics on regional and global scales. However, even the most validated models are usually hampered by the poor availability of global biomass data in the model validation, especially on regional/global scales. Here, taking the integrated biosphere simulator model (IBIS) as an example, we evaluated the modeled carbon dynamics, including gross primary production (GPP) and potential above-ground biomass (AGB), on the global scale. The IBIS model was constrained by both in situ GPP and plot-level AGB data collected from the literature. Independent validation showed that IBIS could reproduce GPP and evapotranspiration with acceptable accuracy at site and global levels. On the global scale, the IBIS-simulated total AGB was similar to those obtained in other studies. However, discrepancies were observed between the model-derived and observed spatial patterns of AGB for Amazonian forests. The differences among the AGB spatial patterns were mainly caused by the single-parameter set of the model used. This study showed that different meteorological inputs can also introduce substantial differences in AGB on the global scale. Further analysis showed that this difference is small compared with parameter-induced differences. The conclusions of our research highlight the necessity of considering the heterogeneity of key model physiological parameters in modeling global AGB. The research also shows that to simulate large-scale carbon dynamics, both carbon flux and AGB data are necessary to constrain the model. The main conclusions of our research will help to improve model simulations of global carbon cycles.

scholarly journals High Rates of Ecosytem Metabolism in Five Western Rivers

2011 ◽  
Vol 33 ◽  
pp. 115-118
Author(s):  
Robert Hall ◽  
Jennifer Tank ◽  
Michelle Baker ◽  
Emma Rosi-Marshall ◽  
Michael Grace ◽  
...  
Keyword(s):  
Organic Carbon ◽  
Primary Production ◽  
Carbon Cycling ◽  
Carbon Balance ◽  
Carbon Fixation ◽  
Higher Plants ◽  
Ecosystem Respiration ◽  
Gross Primary Production ◽  
Total Rate ◽  
Global Carbon

Primary production and respiration are core functions of river ecosystems that in part determine the carbon balance. Gross primary production (GPP) is the total rate of carbon fixation by autotrophs such as algae and higher plants and is equivalent to photosynthesis. Ecosystem respiration (ER) measures rate at which organic carbon is mineralized to CO2 by all organisms in an ecosystem. Together these fluxes can indicate the base of the food web to support animal production (Marcarelli et al. 2011), can predict the cycling of other elements (Hall and Tank 2003), and can link ecosystems to global carbon cycling (Cole et al. 2007).

scholarly journals Expanded Phylogenetic Diversity and Metabolic Flexibility of Mercury-Methylating Microorganisms

mSystems ◽  
2020 ◽  
Vol 5 (4) ◽  
Author(s):  
Elizabeth A. McDaniel ◽  
Benjamin D. Peterson ◽  
Sarah L. R. Stevens ◽  
Patricia Q. Tran ◽  
Karthik Anantharaman ◽  
...  
Keyword(s):  
Phylogenetic Diversity ◽  
Large Scale ◽  
Carbon Fixation ◽  
Anaerobic Bacteria ◽  
Inorganic Mercury ◽  
Metal Resistance ◽  
Metabolic Flexibility ◽  
Metabolic Diversity ◽  
Content Type ◽  
Methylmercury Production

ABSTRACT Methylmercury is a potent bioaccumulating neurotoxin that is produced by specific microorganisms that methylate inorganic mercury. Methylmercury production in diverse anaerobic bacteria and archaea was recently linked to the hgcAB genes. However, the full phylogenetic and metabolic diversity of mercury-methylating microorganisms has not been fully unraveled due to the limited number of cultured experimentally verified methylators and the limitations of primer-based molecular methods. Here, we describe the phylogenetic diversity and metabolic flexibility of putative mercury-methylating microorganisms by hgcAB identification in publicly available isolate genomes and metagenome-assembled genomes (MAGs) as well as novel freshwater MAGs. We demonstrate that putative mercury methylators are much more phylogenetically diverse than previously known and that hgcAB distribution among genomes is most likely due to several independent horizontal gene transfer events. The microorganisms we identified possess diverse metabolic capabilities spanning carbon fixation, sulfate reduction, nitrogen fixation, and metal resistance pathways. We identified 111 putative mercury methylators in a set of previously published permafrost metatranscriptomes and demonstrated that different methylating taxa may contribute to hgcA expression at different depths. Overall, we provide a framework for illuminating the microbial basis of mercury methylation using genome-resolved metagenomics and metatranscriptomics to identify putative methylators based upon hgcAB presence and describe their putative functions in the environment. IMPORTANCE Accurately assessing the production of bioaccumulative neurotoxic methylmercury by characterizing the phylogenetic diversity, metabolic functions, and activity of methylators in the environment is crucial for understanding constraints on the mercury cycle. Much of our understanding of methylmercury production is based on cultured anaerobic microorganisms within the Deltaproteobacteria, Firmicutes, and Euryarchaeota. Advances in next-generation sequencing technologies have enabled large-scale cultivation-independent surveys of diverse and poorly characterized microorganisms from numerous ecosystems. We used genome-resolved metagenomics and metatranscriptomics to highlight the vast phylogenetic and metabolic diversity of putative mercury methylators and their depth-discrete activities in thawing permafrost. This work underscores the importance of using genome-resolved metagenomics to survey specific putative methylating populations of a given mercury-impacted ecosystem.

scholarly journals Changes in the upper ocean mixed layer and phytoplankton productivity along the West Antarctic Peninsula

2018 ◽  
Vol 376 (2122) ◽  
pp. 20170173 ◽  
Author(s):  
Oscar Schofield ◽  
Michael Brown ◽  
Josh Kohut ◽  
Schuyler Nardelli ◽  
Grace Saba ◽  
...  
Keyword(s):  
Sea Ice ◽  
Antarctic Peninsula ◽  
Mixed Layer ◽  
Carbon Fixation ◽  
Upper Ocean ◽  
The West ◽  
Phytoplankton Productivity ◽  
West Antarctic ◽  
West Antarctic Peninsula

The West Antarctic Peninsula (WAP) has experienced significant change over the last 50 years. Using a 24 year spatial time series collected by the Palmer Long Term Ecological Research programme, we assessed long-term patterns in the sea ice, upper mixed layer depth (MLD) and phytoplankton productivity. The number of sea ice days steadily declined from the 1980s until a recent reversal that began in 2008. Results show regional differences between the northern and southern regions sampled during regional ship surveys conducted each austral summer. In the southern WAP, upper ocean MLD has shallowed by a factor of 2. Associated with the shallower mixed layer is enhanced phytoplankton carbon fixation. In the north, significant interannual variability resulted in the mixed layer showing no trended change over time and there was no significant increase in the phytoplankton productivity. Associated with the recent increases in sea ice there has been an increase in the photosynthetic efficiency (chlorophyll a -normalized carbon fixation) in the northern and southern regions of the WAP. We hypothesize the increase in sea ice results in increased micronutrient delivery to the continental shelf which in turn leads to enhanced photosynthetic performance. This article is part of the theme issue ‘The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change’.

scholarly journals Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens

2019 ◽  
Vol 116 (11) ◽  
pp. 5037-5044 ◽  
Author(s):  
Bojk A. Berghuis ◽  
Feiqiao Brian Yu ◽  
Frederik Schulz ◽  
Paul C. Blainey ◽  
Tanja Woyke ◽  
...  
Keyword(s):  
Paradigm Shift ◽  
Carbon Fixation ◽  
Methanogenic Archaea ◽  
Global Carbon Cycle ◽  
Hydrogenotrophic Methanogenesis ◽  
Shared Ancestry ◽  
Hydrogenotrophic Methanogens ◽  
Methyl Coenzyme M Reductase ◽  
Global Carbon ◽  
Insight Into

Methanogenic archaea are major contributors to the global carbon cycle and were long thought to belong exclusively to the euryarchaeal phylum. Discovery of the methanogenesis gene cluster methyl-coenzyme M reductase (Mcr) in the Bathyarchaeota, and thereafter the Verstraetearchaeota, led to a paradigm shift, pushing back the evolutionary origin of methanogenesis to predate that of the Euryarchaeota. The methylotrophic methanogenesis found in the non-Euryarchaota distinguished itself from the predominantly hydrogenotrophic methanogens found in euryarchaeal orders as the former do not couple methanogenesis to carbon fixation through the reductive acetyl-CoA [Wood–Ljungdahl pathway (WLP)], which was interpreted as evidence for independent evolution of the two methanogenesis pathways. Here, we report the discovery of a complete and divergent hydrogenotrophic methanogenesis pathway in a thermophilic order of the Verstraetearchaeota, which we have named Candidatus Methanohydrogenales, as well as the presence of the WLP in the crenarchaeal order Desulfurococcales. Our findings support the ancient origin of hydrogenotrophic methanogenesis, suggest that methylotrophic methanogenesis might be a later adaptation of specific orders, and provide insight into how the transition from hydrogenotrophic to methylotrophic methanogenesis might have occurred.

SECULAR VARIATIONS IN THE 14C CONCENTRATION OF DOUGLAS FIR TREE RINGS

1966 ◽  
Vol 3 (1) ◽  
pp. 1-7 ◽  
Author(s):  
Willy Dyck
Keyword(s):  
Large Scale ◽  
Carbon Fixation ◽  
Douglas Fir ◽  
Sunspot Activity ◽  
Short Term ◽  
Fixation Rate ◽  
Pumping Rate ◽  
Counting Error ◽  
Annual Growth Rings

Measurements of the 14C concentration in a Douglas fir from Vancouver Island indicate a maximum variation of 44‰, during the past 1 100 years. The magnitude and trend of these variations are similar to those observed by de Vries (1958) in oak from Germany and by Willis et al. (1960) in sequoias from California, confirming earlier observations that atmospheric mixing of CO2 takes place rapidly on a large scale.14C measurements of successive annual growth rings from the piths of two firs (346 years and 1 142 years old) show no variations beyond those attributable to the statistical counting error of ± 6‰. Thus, cyclic variations in sunspot activity and (or) climate, if present during these intervals, did not affect the 14C concentration in the biosphere appreciably.A mechanism, based on a climate-sensitive carbon pumping rate of the biosphere coupled with the temperature-dependent oceanic CO2 content is postulated to explain, qualitatively, the observed short-term (150 years or less) and long-term (1 000 years or more) 14C variations in the land biosphere. Short-term fluctuations are directly proportional to temperature because variations in the carbon fixation rate lead to a pulsating CO2 content of the atmosphere. Long-term changes are inversely proportional to temperature because large quantities of carbon, normally stored in deeper regions of the ocean, are exchanged between biosphere and hydrosphere.

scholarly journals Thickness-Weighted Mean Theory for the Effect of Surface Gravity Waves on Mean Flows in the Upper Ocean

2012 ◽  
Vol 42 (5) ◽  
pp. 725-747 ◽  
Author(s):  
Hidenori Aiki ◽  
Richard J. Greatbatch
Keyword(s):  
Gravity Waves ◽  
Large Scale ◽  
Turbulent Viscosity ◽  
Residual Effect ◽  
Surface Gravity ◽  
Upper Ocean ◽  
Weighted Mean ◽  
Surface Gravity Waves ◽  
Viscosity Term ◽  
Effect Of Surface

Abstract The residual effect of surface gravity waves on mean flows in the upper ocean is investigated using thickness-weighted mean (TWM) theory applied in a vertically Lagrangian and horizontally Eulerian coordinate system. Depth-dependent equations for the conservation of volume, momentum, and energy are derived. These equations allow for (i) finite amplitude fluid motions, (ii) the horizontal divergence of currents, and (iii) a concise treatment of both kinematic and viscous boundary conditions at the sea surface. Under the assumptions of steady and monochromatic waves and a uniform turbulent viscosity, the TWM momentum equations are used to illustrate the pressure- and viscosity-induced momentum fluxes through the surface, which are implicit in previous studies of the wave-induced modification of the classical Ekman spiral problem. The TWM approach clarifies, in particular, the surface momentum flux associated with the so-called virtual wave stress of Longuet-Higgins. Overall, the TWM framework can be regarded as an alternative to the three-dimensional Lagrangian mean framework of Pierson. Moreover, the TWM framework can be used to include the residual effect of surface waves in large-scale circulation models. In specific models that carry the TWM velocity appropriate for advecting tracers as their velocity variable, the turbulent viscosity term should be modified so that the viscosity acts only on the Eulerian mean velocity.

Gyration effect of the large-scale turbulence in the upper ocean

2012 ◽  
Vol 12 (5) ◽  
pp. 429-438 ◽  
Author(s):  
Jaak Heinloo ◽  
Aleksander Toompuu ◽  
Madis-Jaak Lilover
Keyword(s):  
Large Scale ◽  
Upper Ocean ◽  
Scale Turbulence
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