scholarly journals Soil gas probes for monitoring trace gas messengers of microbial activity

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Joseph R. Roscioli ◽  
Laura K. Meredith ◽  
Joanne H. Shorter ◽  
Juliana Gil-Loaiza ◽  
Till H. M. Volkmann
Keyword(s):  
Microbial Activity ◽  
Soil Heterogeneity ◽  
Soil Gas ◽  
Microbial Processes ◽  
Trace Gas ◽  
Soil Microbiome ◽  
Sampling System ◽  
Site Specific ◽  
Gas Measurements ◽  
Subsurface Monitoring

AbstractSoil microbes vigorously produce and consume gases that reflect active soil biogeochemical processes. Soil gas measurements are therefore a powerful tool to monitor microbial activity. Yet, the majority of soil gases lack non-disruptive subsurface measurement methods at spatiotemporal scales relevant to microbial processes and soil structure. To address this need, we developed a soil gas sampling system that uses novel diffusive soil probes and sample transfer approaches for high-resolution sampling from discrete subsurface regions. Probe sampling requires transferring soil gas samples to above-ground gas analyzers where concentrations and isotopologues are measured. Obtaining representative soil gas samples has historically required balancing disruption to soil gas composition with measurement frequency and analyzer volume demand. These considerations have limited attempts to quantify trace gas spatial concentration gradients and heterogeneity at scales relevant to the soil microbiome. Here, we describe our new flexible diffusive probe sampling system integrated with a modified, reduced volume trace gas analyzer and demonstrate its application for subsurface monitoring of biogeochemical cycling of nitrous oxide (N2O) and its site-specific isotopologues, methane, carbon dioxide, and nitric oxide in controlled soil columns. The sampling system observed reproducible responses of soil gas concentrations to manipulations of soil nutrients and redox state, providing a new window into the microbial response to these key environmental forcings. Using site-specific N2O isotopologues as indicators of microbial processes, we constrain the dynamics of in situ microbial activity. Unlocking trace gas messengers of microbial activity will complement -omics approaches, challenge subsurface models, and improve understanding of soil heterogeneity to disentangle interactive processes in the subsurface biome.

Atmospheric trace gas measurements with a new clean air sampling system

1981 ◽  
Vol 8 (10) ◽  
pp. 1079-1082 ◽  
Author(s):  
R. Leifer ◽  
K. Sommers ◽  
S. F. Guggenheim
Keyword(s):  
Air Sampling ◽  
Trace Gas ◽  
Sampling System ◽  
Clean Air ◽  
Gas Measurements ◽  
Atmospheric Trace Gas

scholarly journals Versatile soil gas concentration and isotope monitoring: optimization and integration of novel soil gas probes with online trace gas detection

2022 ◽  
Vol 19 (1) ◽  
pp. 165-185
Author(s):  
Juliana Gil-Loaiza ◽  
Joseph R. Roscioli ◽  
Joanne H. Shorter ◽  
Till H. M. Volkmann ◽  
Wei-Ren Ng ◽  
...  
Keyword(s):  
Real Time ◽  
Trace Gases ◽  
Soil Gas ◽  
Redox Conditions ◽  
Trace Gas ◽  
Soil System ◽  
Isotopic Signatures ◽  
Gas Measurements ◽  
The Impact

Abstract. Gas concentrations and isotopic signatures can unveil microbial metabolisms and their responses to environmental changes in soil. Currently, few methods measure in situ soil trace gases such as the products of nitrogen and carbon cycling or volatile organic compounds (VOCs) that constrain microbial biochemical processes like nitrification, methanogenesis, respiration, and microbial communication. Versatile trace gas sampling systems that integrate soil probes with sensitive trace gas analyzers could fill this gap with in situ soil gas measurements that resolve spatial (centimeters) and temporal (minutes) patterns. We developed a system that integrates new porous and hydrophobic sintered polytetrafluoroethylene (sPTFE) diffusive soil gas probes that non-disruptively collect soil gas samples with a transfer system to direct gas from multiple probes to one or more central gas analyzer(s) such as laser and mass spectrometers. Here, we demonstrate the feasibility and versatility of this automated multiprobe system for soil gas measurements of isotopic ratios of nitrous oxide (δ18O, δ15N, and the 15N site preference of N2O), methane, carbon dioxide (δ13C), and VOCs. First, we used an inert silica matrix to challenge probe measurements under controlled gas conditions. By changing and controlling system flow parameters, including the probe flow rate, we optimized recovery of representative soil gas samples while reducing sampling artifacts on subsurface concentrations. Second, we used this system to provide a real-time window into the impact of environmental manipulation of irrigation and soil redox conditions on in situ N2O and VOC concentrations. Moreover, to reveal the dynamics in the stable isotope ratios of N2O (i.e., 14N14N16O, 14N15N16O, 15N14N16O, and 14N14N18O), we developed a new high-precision laser spectrometer with a reduced sample volume demand. Our integrated system – a tunable infrared laser direct absorption spectrometry (TILDAS) in parallel with Vocus proton transfer reaction mass spectrometry (PTR-MS), in line with sPTFE soil gas probes – successfully quantified isotopic signatures for N2O, CO2, and VOCs in real time as responses to changes in the dry–wetting cycle and redox conditions. Broadening the collection of trace gases that can be monitored in the subsurface is critical for monitoring biogeochemical cycles, ecosystem health, and management practices at scales relevant to the soil system.

scholarly journals Versatile soil gas concentration and isotope monitoring: optimization and integration of novel soil gas probes with online trace gas detection

2020 ◽  
Author(s):  
Juliana Gil-Loaiza ◽  
Joseph R. Roscioli ◽  
Joanne H. Shorter ◽  
Till H. M. Volkmann ◽  
Wei-Ren Ng ◽  
...  
Keyword(s):  
Environmental Changes ◽  
Soil Analysis ◽  
Soil Health ◽  
Silica Matrix ◽  
Soil Gas ◽  
Trace Gas ◽  
Site Preference ◽  
Soil Redox ◽  
Isotopic Signatures ◽  
Gas Measurements

Abstract. Gas concentrations and isotopic signatures can unveil microbial metabolisms and their responses to environmental changes in soil. Currently, few methods measure soil trace gases such as the products of nitrogen and carbon cycling, or volatile organic compounds (VOCs), that could constrain microbial biochemical processes like nitrification, methanogenesis, respiration, and microbial communication. Versatile trace gas sampling systems that integrate soil probes with sensitive trace gas analyzers could fill this gap with measurements resolving spatial (centimeter scale) and temporal (minutes) variations in concentrations and isotopic signatures of in situ soil gases. We developed a system that integrates new 15 cm long sintered PTFE diffusive soil gas probes with various infrared spectrometers and a VOC mass spectrometer. The system is based on porous and hydrophobic soil probes that non-disruptively collect and transport gas from multiple probes to one or more central gas analyzers. Here, we demonstrate the feasibility and versatility of an automated multi-probe system for soil gas measurements of isotopic ratios of nitrous oxide (δ18O, δ15N, and the 15N site-preference of N2O), methane, carbon dioxide (δ13C), and VOCs. First, we used an inert silica matrix to challenge probe measurements under controlled gas conditions. By changing and controlling system flow parameters, including probe flow rate, we optimized recovery of representative soil gas samples while reducing sampling artifacts on subsurface concentrations. Second, we forced environmental manipulations in soil-filled columns to demonstrate real-time detection of subsurface gas dynamics in response to irrigation and soil redox conditions. In addition, we developed a new laser spectrometer to recover isotope ratios for 14N14N16O (δ446), 14N15N16O (δ456), 15N14N16O (δ546), and 14N14N18O (δ448) with high precision and low concentration dependence. We captured temporal subsurface gas pulses in CO2, N2O, and VOCs. This demonstrated the potential for diffusive-based probes to couple to trace gas sensors for soil health and fertility studies, and to inform high-throughput meta-omics, leading to the development of a suite of powerful new tools for soil analysis.

scholarly journals An evaluation of the performance of chemistry transport models by comparison with research aircraft observations. Part 1: Concepts and overall model performance

2003 ◽  
Vol 3 (5) ◽  
pp. 1609-1631 ◽  
Author(s):  
D. Brunner ◽  
J. Staehelin ◽  
H. L. Rogers ◽  
M. O. Köhler ◽  
J. A. Pyle ◽  
...  
Keyword(s):  
Quantitative Methods ◽  
Climate Models ◽  
Model Performance ◽  
Average Concentration ◽  
Convective Transport ◽  
Trace Gas ◽  
Atmospheric Conditions ◽  
Time Step ◽  
Research Aircraft ◽  
Gas Measurements

Abstract. A rigorous evaluation of five global Chemistry-Transport and two Chemistry-Climate Models operated by several different groups in Europe, was performed. Comparisons were made of the models with trace gas observations from a number of research aircraft measurement campaigns during the four-year period 1995-1998. Whenever possible the models were run over the same four-year period and at each simulation time step the instantaneous tracer fields were interpolated to all coinciding observation points. This approach allows for a very close comparison with observations and fully accounts for the specific meteorological conditions during the measurement flights. This is important considering the often limited availability and representativity of such trace gas measurements. A new extensive database including all major research and commercial aircraft measurements between 1995 and 1998, as well as ozone soundings, was established specifically to support this type of direct comparison. Quantitative methods were applied to judge model performance including the calculation of average concentration biases and the visualization of correlations and RMS errors in the form of so-called Taylor diagrams. We present the general concepts applied, the structure and content of the database, and an overall analysis of model skills over four distinct regions. These regions were selected to represent various atmospheric conditions and to cover large geographical domains such that sufficient observations are available for comparison. The comparison of model results with the observations revealed specific problems for each individual model. This study suggests the further improvements needed and serves as a benchmark for re-evaluations of such improvements. In general all models show deficiencies with respect to both mean concentrations and vertical gradients of important trace gases. These include ozone, CO and NOx at the tropopause. Too strong two-way mixing across the tropopause is suggested to be the main reason for differences between simulated and observed CO and ozone values. The generally poor correlations between simulated and measured NOx values suggest that in particular the NOx input by lightning and the convective transport from the polluted boundary layer are still not well described by current parameterizations, which may lead to significant differences in the spatial and seasonal distribution of NOx in the models. Simulated OH concentrations, on the other hand, were found to be in surprisingly good agreement with measured values.

scholarly journals The high Arctic in extreme winters: vortex, temperature, and MLS and ACE-FTS trace gas evolution

2008 ◽  
Vol 8 (3) ◽  
pp. 505-522 ◽  
Author(s):  
G. L. Manney ◽  
W. H. Daffer ◽  
K. B. Strawbridge ◽  
K. A. Walker ◽  
C. D. Boone ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Lower Stratosphere ◽  
High Arctic ◽  
Trace Gas ◽  
Satellite Measurements ◽  
Broadband Emission ◽  
Gas Measurements ◽  
Chemistry Experiment ◽  
Very High ◽  
Good Agreement

Abstract. The first three Arctic winters of the ACE mission represented two extremes of winter variability: Stratospheric sudden warmings (SSWs) in 2004 and 2006 were among the strongest, most prolonged on record; 2005 was a record cold winter. Canadian Arctic Atmospheric Chemistry Experiment (ACE) Validation Campaigns were conducted at Eureka (80° N, 86° W) during each of these winters. New satellite measurements from ACE-Fourier Transform Spectrometer (ACE-FTS), Sounding of the Atmosphere using Broadband Emission Radiometry (SABER), and Aura Microwave Limb Sounder (MLS), along with meteorological analyses and Eureka lidar temperatures, are used to detail the meteorology in these winters, to demonstrate its influence on transport, and to provide a context for interpretation of ACE-FTS and validation campaign observations. During the 2004 and 2006 SSWs, the vortex broke down throughout the stratosphere, reformed quickly in the upper stratosphere, and remained weak in the middle and lower stratosphere. The stratopause reformed at very high altitude, near 75 km. ACE measurements covered both vortex and extra-vortex conditions in each winter, except in late-February through mid-March 2004 and 2006, when the strong, pole-centered vortex that reformed after the SSWs resulted in ACE sampling only inside the vortex in the middle through upper stratosphere. The 2004 and 2006 Eureka campaigns were during the recovery from the SSWs, with the redeveloping vortex over Eureka. 2005 was the coldest winter on record in the lower stratosphere, but with an early final warming in mid-March. The vortex was over Eureka at the start of the 2005 campaign, but moved away as it broke up. Disparate temperature profile structure and vortex evolution resulted in much lower (higher) temperatures in the upper (lower) stratosphere in 2004 and 2006 than in 2005. Satellite temperatures agree well with lidar data up to 50–60 km, and ACE-FTS, MLS and SABER show good agreement in high-latitude temperatures throughout the winters. Consistent with a strong, cold upper stratospheric vortex and enhanced radiative cooling after the SSWs, MLS and ACE-FTS trace gas measurements show strongly enhanced descent in the upper stratospheric vortex in late January through March 2006 compared to that in 2005.

Atmospheric trace gas measurements at Palmer Station, Antarctica: 1982?83

1984 ◽  
Vol 2 (1) ◽  
pp. 65-81 ◽  
Author(s):  
E. Robinson ◽  
W. L. Bamesberger ◽  
F. A. Menzia ◽  
A. S. Waylett ◽  
S. F. Waylett
Keyword(s):  
Trace Gas ◽  
Palmer Station ◽  
Gas Measurements ◽  
Atmospheric Trace Gas

Biological processes in modelling soil functions – a balancing act between too complex and too simple

2021 ◽  
Author(s):  
Sara König ◽  
Ulrich Weller ◽  
Thomas Reitz ◽  
Bibiana Betancur-Corredor ◽  
Birgit Lang ◽  
...  
Keyword(s):  
Nutrient Cycling ◽  
Microbial Activity ◽  
Community Dynamics ◽  
Spatial Scales ◽  
Simulation Models ◽  
Microbial Processes ◽  
Biological Processes ◽  
Soil Functions ◽  
Management Options ◽  
The Impact

<p>Mechanistic simulation models are an essential tool for predicting soil functions such as nutrient cycling, water filtering and storage, productivity and carbon storage as well as the complex interactions between these functions. Most soil functions are driven or affected by soil organisms. Yet, biological processes are often neglected in soil function models or implicitly described by rate parameters. This can be explained by the high complexity of the soil ecosystem with its dynamic and heterogeneous environment, and by the range of temporal and spatial scales these processes are taking place at. On the other hand, the technical capabilities to explore microbial activity and communities in soil has greatly improved, resulting in new possibilities to understand soil microbial processes on various scales.</p><p>However, to integrate such biological processes in soil modelling, we need to find the right level of detail. Here, we present a systemic soil model approach to simulate the impact of different management options and changing climate on soil functions integrating biological activity on the profile scale. We use stoichiometric considerations to simulate microbial processes involved in different soil functions without explicitly describing community dynamics or functional groups. With this approach we are able to mechanistically describe microbial activity and its impact on the turnover of organic matter and nutrient cycling as driven by agricultural soil management.</p><p>Further, we discuss general challenges and ongoing developments to additionally consider, e.g., microbe-fauna-interactions or microbial feedback with soil structure dynamics.</p>

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