Data integration and predictive modeling methods for multi-omics datasets

2018 ◽  
Vol 14 (1) ◽  
pp. 8-25 ◽  
Author(s):  
Minseung Kim ◽  
Ilias Tagkopoulos

We provide an overview of opportunities and challenges in multi-omics predictive analytics with particular emphasis on data integration and machine learning methods.

2021 ◽  
Author(s):  
Andreas Sepp

Artificial intelligence and machine learning methods had significant contribution to the advancement and progress of predictive analytics. This article presents a state of the art of methods and applications of artificial intelligence and machine learning.


PLoS ONE ◽  
2020 ◽  
Vol 15 (10) ◽  
pp. e0239424
Author(s):  
Peter M. Yaworsky ◽  
Kenneth B. Vernon ◽  
Jerry D. Spangler ◽  
Simon C. Brewer ◽  
Brian F. Codding

2015 ◽  
Vol 11 (4) ◽  
pp. e1004185 ◽  
Author(s):  
Ickwon Choi ◽  
Amy W. Chung ◽  
Todd J. Suscovich ◽  
Supachai Rerks-Ngarm ◽  
Punnee Pitisuttithum ◽  
...  

2020 ◽  
Vol 11 ◽  
Author(s):  
Pedro F. Da Costa ◽  
Jessica Dafflon ◽  
Walter H. L. Pinaya

As we age, our brain structure changes and our cognitive capabilities decline. Although brain aging is universal, rates of brain aging differ markedly, which can be associated with pathological mechanism of psychiatric and neurological diseases. Predictive models have been applied to neuroimaging data to learn patterns associated with this variability and develop a neuroimaging biomarker of the brain condition. Aiming to stimulate the development of more accurate brain-age predictors, the Predictive Analytics Competition (PAC) 2019 provided a challenge that included a dataset of 2,640 participants. Here, we present our approach which placed between the top 10 of the challenge. We developed an ensemble of shallow machine learning methods (e.g., Support Vector Regression and Decision Tree-based regressors) that combined voxel-based and surface-based morphometric data. We used normalized brain volume maps (i.e., gray matter, white matter, or both) and features of cortical regions and anatomical structures, like cortical thickness, volume, and mean curvature. In order to fine-tune the hyperparameters of the machine learning methods, we combined the use of genetic algorithms and grid search. Our ensemble had a mean absolute error of 3.7597 years on the competition, showing the potential that shallow methods still have in predicting brain-age.


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