scholarly journals Kinetic analysis of the heparin-enhanced plasmin–antithrombin III reaction. Apparent catalytic role of heparin

1981 ◽  
Vol 199 (3) ◽  
pp. 521-526 ◽  
Author(s):  
Raymund Machovich ◽  
Pál I. Bauer ◽  
Péter Arányi ◽  
Éva Kecskés ◽  
Kálmán G. Büki ◽  
...  
Keyword(s):  
Rate Constants ◽  
Antithrombin Iii ◽  
Enzyme Inactivation ◽  
Inactivation Rate ◽  
Enhancement Effect ◽  
Activation Entropy ◽  
Constant Amount ◽  
Rate Enhancement ◽  
First Order ◽  
Pseudo First Order

Inactivation of plasmin by a 3–4-fold molar excess of antithrombin III follows pseudo-first-order kinetics and the apparent rate constants are proportional to the concentration of the inhibitor. Heparin accelerates the inactivation reaction without changing its pseudo-first-order character, and the apparent rate constants are also proportional to the concentration of the polysaccharide. Heparin results in a minimum 20-fold rate enhancement of the reaction between plasmin and antithrombin III when the concentrations of heparin and plasmin are approx. 0.5mum and 1mum respectively. Heparin at a molar concentration well below that of plasmin still accelerates the reaction: one molecule of the polysaccharide is able to facilitate the inactivation of about 100 molecules of plasmin. Heparin must bind to plasmin to accelerate the plasmin–antithrombin III reaction, since the modification of four to five lysine residues of the enzyme inhibits the rate-enhancement effect of heparin and the dissociation of heparin–plasmin complex decreases the inactivation rate of plasmin. Increasing the concentration of antithrombin III, at a constant amount of heparin, results in increase of the inactivation rate. By contrast, the effect of increasing the amount of plasmin in the presence of constant amount of heparin and antithrombin III is such that higher plasmin-to-heparin ratios are associated with lower rates of inactivation. It seems, therefore, that to obtain ‘optimal’ conditions for fast enzyme inactivation, the amount of heparin should be matched to plasmin rather than to antithrombin III. Arrhenius plots of the plasmin–antithrombin III reaction are linear both in the absence and presence of heparin, at concentrations of 1 or 2mug/ml, over a range of 26K. Under these experimental conditions, heparin increases activation entropy. The findings show that heparin seems to fulfil some criteria that are characteristic for biological catalysis: binding, reaction-rate enhancement (increasing activation entropy), recycling of heparin (effectiveness of non-stoichiometric amounts of the polysaccharide) and specificity.

scholarly journals Kinetic intermediates of unfolding of dimeric prostatic phosphatase.

2007 ◽  
Vol 54 (2) ◽  
pp. 371-377
Author(s):  
Radosława Kuciel ◽  
Aleksandra Mazurkiewicz ◽  
Paulina Dudzik
Keyword(s):  
Rate Constants ◽  
Congo Red ◽  
Reaction Rate ◽  
Enzyme Inactivation ◽  
Thiol Groups ◽  
Ans Binding ◽  
First Order ◽  
Activity Measurements ◽  
Catalytically Active ◽  
Pseudo First Order

Kinetics of guanidine hydrochloride (GdnHCl)-induced unfolding of human prostatic acid phosphatase (hPAP), a homodimer of 50 kDa subunit molecular mass was investigated with enzyme activity measurements, capacity for binding an external hydrophobic probe, 1-anilinonaphtalene-8-sulfonate (ANS), accessibility of thiols to reaction with 5,5'-dithiobis(2-nitrobenzoic acid) (DTNB) and 2-(4'-maleimidylanilino)naphthalene-6-sulfonate (MIANS) and ability to bind Congo red dye. Kinetic analysis was performed to describe a possible mechanism of hPAP unfolding and dissociation that leads to generation of an inactive monomeric intermediate that resembles, in solution of 1.25 M GdnHCl pH 7.5, at 20 degrees C, in equilibrium, a molten globule state. The reaction of hPAP inactivation in 1.25 M GdnHCl followed first order kinetics with the reaction rate constant 0.0715 +/- 0.0024 min(-1) . The rate constants of similar range were found for the pseudo-first-order reactions of ANS and Congo red binding: 0.0366 +/- 0.0018 min(-1) and 0.0409 +/- 0.0052 min(-1), respectively. Free thiol groups, inaccessible in the native protein, were gradually becoming, with the progress of unfolding, exposed for the reactions with DTNB and MIANS, with the pseudo-first-order reaction rate constants 0.327 +/- 0.014 min(-1) and 0.216 +/- 0.010 min(-1), respectively. The data indicated that in the course of hPAP denaturation exposure of thiol groups to reagents took place faster than the enzyme inactivation and exposure of the protein hydrophobic surface. This suggested the existence of a catalytically active, partially unfolded, but probably dimeric kinetic intermediate in the process of hPAP unfolding. On the other hand, the protein inactivation was accompanied by exposure of a hydrophobic, ANS-binding surface, and with an increased capacity to bind Congo red. Together with previous studies these results suggest that the stability of the catalytically active conformation of the enzyme depends mainly on the dimeric structure of the native hPAP.

A kinetic standard for precise calibration of spectrophotometer cell temperature.

1981 ◽  
Vol 27 (5) ◽  
pp. 753-755 ◽  
Author(s):  
P A Adams ◽  
M C Berman
Keyword(s):  
Temperature Dependence ◽  
Rate Constants ◽  
Cell Temperature ◽  
First Order ◽  
Order Rate ◽  
Acid Catalyzed ◽  
Pseudo First Order ◽  
Hydrolysis Of

Abstract We describe a simple, highly reproducible kinetic technique for precisely measuring temperature in spectrophotometric systems having reaction cells that are inaccessible to conventional temperature probes. The method is based on the temperature dependence of pseudo-first-order rate constants for the acid-catalyzed hydrolysis of N-o-tolyl-D-glucosylamine. Temperatures of reaction cuvette contents are measured with a precision of +/- 0.05 degrees C (1 SD).

On the Chemical Reactivity of the Phytochrome Chromophore in the Pr and Pfr Form

1985 ◽  
Vol 40 (3-4) ◽  
pp. 215-218 ◽  
Author(s):  
Fritz Thümmler ◽  
Peter Eilfeld ◽  
Wolfhart Rüdiger ◽  
Doo-Khil Moon ◽  
Pill-Soon Song
Keyword(s):  
Reaction Kinetics ◽  
Rate Constants ◽  
Chemical Reactivity ◽  
Order Reaction ◽  
First Order Reaction ◽  
Limiting Factor ◽  
Pseudo First Order Reaction ◽  
First Order ◽  
Pseudo First Order ◽  
The Difference

The reactivity of the phytochrome chromophore and related tetrapyrroles towards ozone and tetranitromethane was investigated. Both oxidizing reagents cause bleaching of the main absorp­tion band of the pigment. The rate constants for this bleaching were determined under conditions of pseudo first order reaction kinetics. The rate constants for the reaction with ozone are similar for native phytochrome and for freely accessible tetrapyrroles (biliverdin, small chromopeptides from phytochrome) indicating that accessibility is not the limiting factor for the reaction with ozone. Under a variety of conditions, the Pfr chromophore reacts by about 10% faster than the Pr chromophore. This may reflect the true difference in reactivity. The rate constants for the reaction with tetranitromethane are much larger for biliverdin, bilirubin and small chromopeptides from phytochrome than for native phytochrome. The limiting factor for this reaction in native phytochrome therefore is the accessibility of the chromophore by the reagent. Previous conclusions on the difference in exposure of the tetrapyrrole chromophore in Pr and Pfr are confirmed.

HUMAN MEIZOTHROMBIN 1, ITS ISOLATION AND PROPERTIES

1987 ◽  
Author(s):  
Zbigniew S Latallo ◽  
Craig M Jackson
Keyword(s):  
Rate Constants ◽  
Antithrombin Iii ◽  
Order Rate Constant ◽  
Red Cross ◽  
Apparent Lack ◽  
First Order ◽  
Order Rate ◽  
Matching Grant ◽  
Echis Carinatus

Meizothrombin (MT) and meizothrombin des Fragment 1 (MT1) are intermediates in the conversion of prothrombin to α-thrombin (αTH). Due to their transient character, properties of these enzymes are difficult to establish. Isolation of MT1 was achieved by affinity chromatography on D-Phe-Pro-Arginal (FPRal)immobilized on Affi-Gel 10 as originally employed for thrombin purification (Patel et al. Biochim.Biophys. Acta 748,321 (1983)). Human prethrombin 1 was activated with the purified activator from Echis carinatus venom in the presence of Ca++;, benzamidine and FPRal gel at pH 7.8. After exhaustive washing the MT1 was eluted with 0.1 M hydroxylamine in 0.15 M Na acetate buffer, pH 5.5. Under these conditions the MT1 is stable and can bestored at -70°C. Upon changing the pH of the preparation to 8.0, complete conversion into aTH occurred atroom temperature within 48 hours. Homogeneity of both preparations wasdemonstrated by PAGE. The Km and ke, values for MT1 measured on Tos-Gly-Pro-Arg pNA(0.1 M NaCl, 0.01 M TRIS, 0.01 M HEPES, 0.1% PEG, pH 7.8, 25°C) were 15.7 /iM and 126 s-1. The kinetic con stants for the aTH resulting from autocatalytic degradation of MT1 were indistinguishable from those previously established forαTH obtained by Xa activation i.e. 4.77 /μM and 126 s-1. Clotting activity of MT1 was found to be only one fifth as high as that of the resulting μTH(746 u/mg vs. 3900 u/mg as tested using the NIH standard) .Inhibitionof MTl by antithrombin III was alsomuch less rapid than αTH andmost importantly, it was not affected by high affinity heparin( Mr20,300). Under conditions of the experiment (0.3 M NaCl, 0.0rl M TRIS, 0.01 M HEPES, 2.5 mM EDTA, 0.1% PEG, pH 7.8, 25°C; [ATIII] 100 nM, [E] 10 nM), the pseudo first order rate constants in the absence of heparin were 4.04 × 10-3V1 (MTl) and 1.13 × 10-3V1 (αTH), giving apparent second order rate constants of 4.04 × 103 and 1.13 × 10-4M-1s-1. In the presence of 4.5 nM of heparin the observed first order rate constant for MTl remained unchanged whereas it increased to 6.241 × 10-3s-1 (5.5 fold) for αTH. This apparent lack of an effect of heparin may be of significance in vivo.Supported by a Matching Grant from the American National Red Cross and by the Southeastern Michigan Blood Service.

The mercury(II)-induced aquation of trans-Chloroamminebis(dimethylglyoximato)cobalt(III) complex

1975 ◽  
Vol 28 (5) ◽  
pp. 1133 ◽  
Author(s):  
S Chan ◽  
S Tan
Keyword(s):  
Rate Constants ◽  
Aqueous Ethanol ◽  
Association Constants ◽  
First Order ◽  
Order Rate ◽  
Leaving Group ◽  
Pseudo First Order ◽  
Activated Complex

The pseudo first-order rate constants for the mercury(II)-induced aquation of trans-[Co(Hdmg)2(NH3)Cl] (Hdmg = dimethylglyoximate ion) have been measured in aqueous and aqueous ethanol solutions (ethanol- water mole ratio 1 : 5.1) containing various excess amounts of mercury(II)ion at 273.2 K. Association constants of the complex formed with mercury(II) ion and rate constants for dissociation of the activated complex in both solutions have been calculated. The kinetic results are discussed in terms of formation of an activated complex Co-C1-Hg, followed by a simple rate-determining aquation in which HgCl+ acts as the leaving group.

Kinetics of the Ozonation of Tetrabromobisphenol-A in Wastewater

2011 ◽  
Vol 383-390 ◽  
pp. 2945-2950 ◽  
Author(s):  
Jie Zhang ◽  
Shi Long He ◽  
Mei Feng Hou ◽  
Li Ping Wang ◽  
Li Jiang Tian
Keyword(s):  
Rate Constants ◽  
Apparent Rate Constant ◽  
Reaction Rate ◽  
Batch Reactor ◽  
Kinetic Studies ◽  
Tetrabromobisphenol A ◽  
First Order ◽  
Reaction Rate Constants ◽  
Pseudo First Order ◽  
Kinetics Of

The kinetics of TBBPA degradation by ozonation in semi-batch reactor was studied. The reaction rate constants of TBBPA with O3 and •OH were measured by means of direct ozone attack and competition kinetics, and the values of which were 6.10 l/(mol•s), 4.8×109 l/(mol•s), respectively. Results of kinetic studies showed that TBBPA degradation by ozonation under the different conditions tested followed the pseudo-first-order. The values of apparent rate constant of TBBPA degradation increased with the increase of ozone dosage and pH, but decreased with the increase of initial TBBPA concentration.

Graphical rules of steady-state reaction systems

1981 ◽  
Vol 59 (4) ◽  
pp. 737-755 ◽  
Author(s):  
Chou Kuo-Chen ◽  
Sture Forsen
Keyword(s):  
Steady State ◽  
Rate Constants ◽  
Mathematical Proof ◽  
Complex Reaction ◽  
Consecutive Reaction ◽  
Reaction Systems ◽  
First Order ◽  
Mathematical Proofs ◽  
Pseudo First Order ◽  
Manual Calculation

Four rules to deal with first-order or pseudo-first-order steady-state reaction systems are presented.By means of Rule 1, we can immediately write down the apparent rate constants of consecutive reaction systems. This rule is actually the same as the "Rule of Thumb" proposed by Gilbert, but here its mathematical proof is given.Rule 2 and Rule 3 may serve to derive the apparent rate constants of various complex reaction systems. In comparison with the general algebraic methods, these two rules can simplify laborious calculations that would otherwise be tedious and liable to errors.Rule 4 presents a new schematic method to calculate the concentrations of the reactants. The new method, in simplifying the calculation of complex problems, is extraordinarily efficacious in comparison with the existing schematic methods. For complex mechanisms which are too complicated to be treated with the general manual calculation method, the practical calculations show that we can easily write down the desired results by means of Rule 4.In addition, Rules 2, 3, and 4 include corresponding check formulae, by use of which we can avoid missing subgraphs to be counted. Their advantages will be manifested particularly in dealing with complex mechanisms.The mathematical proofs of these rules are given in the Appendices.

Aminolysis of naphthyl acetates catalyzed by cyclodextrins

1999 ◽  
Vol 77 (5-6) ◽  
pp. 950-959 ◽  
Author(s):  
Oswald S Tee ◽  
Michael J Boyd
Keyword(s):  
Aqueous Solution ◽  
Transition State ◽  
Rate Constants ◽  
Nucleophilic Attack ◽  
Reactivity Ratios ◽  
Aryl Group ◽  
First Order ◽  
Free Amine ◽  
Transition State Stabilization ◽  
Pseudo First Order

The effects of cyclodextrins (CDs) on the rate of nucleophilic attack on 1- and 2-naphthyl acetates (1-NA and 2-NA) in aqueous solution have been investigated. Analysis of the variation of the pseudo-first-order rate constants with [nucleophile] and [CD] affords rate constants for reaction of the nucleophiles with free ester (kN) and with ester bound to the CD (kcN). The reaction of 1-NA and 2-NA with the trifluoroethoxide anion is slowed down by β-CD as the ratios kcN/kN are 0.11 and 0.30, respectively. For reaction with the anion of 2-mercaptoethanol in the presence of α-CD, β-CD, "hydroxypropyl-β-CD" (hp-β-CD) and γ-CD, the reactivity ratios kcN/kN vary between 0.04 and 2.4, ranging from strong retardation to modest catalysis; the retardations arise with β-CD and hp-β-CD, which bind the esters strongly. By contrast, the attack of primary alkylamines is generally accelerated, and in many cases substantially so. For the aminolysis of 1-NA in the presence of β-CD, values of kcN/kN range from 7 to 460, assuming that free amine reacts with CD-bound ester. Alternatively, if the CD-catalyzed reaction involves free ester reacting with CD-bound amine, with rate constant kNc, the ratios kNc/kN vary from 43 to 140. Either way, there is appreciable catalysis of the aminolysis of 1-NA by β-CD. For the aminolysis of 2-NA, the effects are less dramatic: the ratios kcN/kN range from 0.19 to 17, and values of kNc/kN vary from 17 to 110. The reaction of 1-NA with n-hexylamine is also catalyzed by γ-CD. The variations of kinetic parameters with alkylamine chain length suggest that the CD-catalyzed aminolysis basically takes place by the attack of CD-bound amine on the free ester. However, there must be some stabilizing interactions between the aryl group of the ester and the CD during the reaction, since the transition state stabilization is different for 1-NA and 2-NA, as well for other esters.Key words: aminolysis, catalysis, cyclodextrin, ester cleavage, kinetics.

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