Adaptational significance of variations in DNA methylation in clonal plant Hierochloe glabra (Poaceae) in heterogeneous habitats

2013 ◽  
Vol 61 (4) ◽  
pp. 274 ◽  
Author(s):  
Rujin Bian ◽  
Dandan Nie ◽  
Fu Xing ◽  
Xiaoling Zhou ◽  
Ying Gao ◽  
...  
Keyword(s):  
Morphological Traits ◽  
Cytosine Methylation ◽  
Epigenetic Modification ◽  
Critical Role ◽  
Clonal Plant ◽  
Clonal Plants ◽  
Dry Mass ◽  
Heterogeneous Habitats ◽  
Leaf Dry Mass ◽  
Methylation Sensitive Amplification Polymorphism

As a prominent epigenetic modification, cytosine methylation may play a critical role in the adaptation of plants to different environments. The present study sought to investigate possible impacts of differential levels of nitrogen (N) supply on cytosine-methylation levels of a clonal plant, Hierochloe glabra Trin. (Poaceae). For this purpose, nitrate was applied at concentrations of 0, 0.15, 0.30 and 0.45 g N kg–1 soil, and ecologically important morphological traits were measured. The methylation-sensitive amplification polymorphism method was also conducted to analyse the variations in DNA cytosine methylation. Our results showed that N addition reduced CHG cytosine-methylation levels markedly compared with control plants growing in homogeneous pots (P = 0.026). No substantial differences were observed in morphological traits at the end of the growing stage, except for the highest ratio of leaf area to leaf dry mass in the medium-N patch (P = 0.008). However, significant linear regression relationships were found between cytosine-methylation levels and morphological traits, such as bud number and rhizome length and biomass. In conclusion, the higher cytosine-methylation level may activate asexual reproduction to produce more offspring and expand plant populations, possibly helping clonal plants to adapt to heterogeneous habitats.

scholarly journals Changes in the growth and reproduction of a clonal plant as a result of disruption of mycorrhizal network

2021 ◽  
Vol 66 (2) ◽  
pp. 195-200
Author(s):  
Martyna Dominiak-Świgoń ◽  
Zbigniew Kasprzykowski ◽  
Marlena Lembicz
Keyword(s):  
Resource Allocation ◽  
Sexual Reproduction ◽  
Mycorrhizal Fungus ◽  
Clonal Plant ◽  
Limited Resource ◽  
Clonal Plants ◽  
Dry Mass ◽  
Mother Plant ◽  
Hieracium Pilosella ◽  
Mycorrhizal Network

In a clonal network, a mother plant is connected with daughter ramets. During network development, new ramets may encounter barriers that disrupt network integrity. As a result, resource allocation within a network is disturbed. In this study, the effect of network integrity disruption on the size of ramets and their sexual reproduction was investigated in mouse-ear hawkweed (Hieracium pilosella). Three types of networks were formed experimentally with unlimited resource allocation, with limited resource allocation between a mother plant and its daughter ramets and with limited resource allocation between all ramets. Networks were either supported by the presence of a mycorrhizal fungus or restricted by its absence. We found that the size of the mother and the effectiveness of sexual reproduction did not differ among network types. The length and dry mass of runners were higher in cases with limited resource exchange between a mother plant and its daughters. In the clonal plant network without any barriers to connection, a higher number of rosettes and lower dry mass of daughters were recorded. The mean number of daughter flowers did not differ among the network types. Mycorrhizal network is one of the most important factors for the sexual reproduction of clonal plants. With a reduced mycorrhizal network, plants invested in clonal growth.

Predictability of Leaf Morphological Traits for Paleoecological Reconstruction: The Case of Leaf Cuticle and Leaf Dry Mass per Area

2020 ◽  
Vol 181 (1) ◽  
pp. 129-141 ◽  
Author(s):  
Linda-Liisa Veromann-Jürgenson ◽  
Timothy J. Brodribb ◽  
Lauri Laanisto ◽  
Sam Bruun-Lund ◽  
Ülo Niinemets ◽  
...  
Keyword(s):  
Morphological Traits ◽  
Dry Mass ◽  
Leaf Cuticle ◽  
Leaf Dry Mass ◽  
Leaf Morphological Traits

scholarly journals Reduced Genomic Cytosine Methylation and Defective Cellular Differentiation in Embryonic Stem Cells Lacking CpG Binding Protein

2005 ◽  
Vol 25 (12) ◽  
pp. 4881-4891 ◽  
Author(s):  
Diana L. Carlone ◽  
Jeong-Heon Lee ◽  
Suzanne R. L. Young ◽  
Erika Dobrota ◽  
Jill Sergesketter Butler ◽  
...  
Keyword(s):  
Stem Cells ◽  
Embryonic Stem Cells ◽  
Dna Methyltransferase ◽  
Cellular Differentiation ◽  
Cytosine Methylation ◽  
Epigenetic Modification ◽  
Binding Protein ◽  
Embryonic Stem ◽  
Growth Media ◽  
Methyltransferase Activity

ABSTRACT Cytosine methylation at CpG dinucleotides is a critical epigenetic modification of mammalian genomes. CpG binding protein (CGBP) exhibits a unique DNA-binding specificity for unmethylated CpG motifs and is essential for early murine development. Embryonic stem cell lines deficient for CGBP were generated to further examine CGBP function. CGBP − / − cells are viable but show an increased rate of apoptosis and are unable to achieve in vitro differentiation following removal of leukemia inhibitory factor from the growth media. Instead, CGBP − / − embryonic stem cells remain undifferentiated as revealed by persistent expression of the pluripotent markers Oct4 and alkaline phosphatase. CGBP − / − cells exhibit a 60 to 80% decrease in global cytosine methylation, including hypo-methylation of repetitive elements, single-copy genes, and imprinted genes. Total DNA methyltransferase activity is reduced by 30 to 60% in CGBP − / − cells, and expression of the maintenance DNA methyltransferase 1 protein is similarly reduced. However, de novo DNA methyltransferase activity is normal. Nearly all aspects of the pleiotropic CGBP − / − phenotype are rescued by introduction of a CGBP expression vector. Hence, CGBP is essential for normal epigenetic modification of the genome by cytosine methylation and for cellular differentiation, consistent with the requirement for CGBP during early mammalian development.

scholarly journals Physiological responses of two tropical weeds to shade: I. Growth and biomass allocation

1999 ◽  
Vol 34 (6) ◽  
pp. 944-952 ◽  
Author(s):  
Moacyr Bernardino Dias-Filho
Keyword(s):  
Leaf Area ◽  
Weed Management ◽  
Dry Mass ◽  
High Light ◽  
Low Light ◽  
Light Regimes ◽  
Leaf Dry Mass ◽  
Lower Ability ◽  
Total Plant ◽  
Plant Dry Mass

Ipomoea asarifolia (Desr.) Roem. & Schultz (Convolvulaceae) and Stachytarpheta cayennensis (Rich) Vahl. (Verbenaceae), two weeds found in pastures and crop areas in Brazilian Amazonia, were grown in controlled environment cabinets under high (800-1000 µmol m-² s-¹) and low (200-350 µmol m-² s-¹) light regimes during a 40-day period. For both species leaf dry mass and leaf area per total plant dry mass, and leaf area per leaf dry mass were higher for low-light plants, whereas root mass per total plant dry mass was higher for high-light plants. High-light S. cayennensis allocated significantly more biomass to reproductive tissue than low-light plants, suggesting a probably lower ability of this species to maintain itself under shaded conditions. Relative growth rate (RGR) in I. asarifolia was initially higher for high-light grown plants and after 20 days started decreasing, becoming similar to low-light plants at the last two harvests (at 30 and 40 days). In S. cayennensis, RGR was also higher for high-light plants; however, this trend was not significant at the first and last harvest dates (10 and 40 days). These results are discussed in relation to their ecological and weed management implications.

scholarly journals An Experiment In Breeding Cut Roses For The Indonesian Highlands

Zuriat ◽  
2015 ◽  
Vol 11 (2) ◽  
Author(s):  
D. P. de Vries ◽  
, Darliah ◽  
Lidwien A.M. Dubois
Keyword(s):  
The Netherlands ◽  
Clonal Plant ◽  
Clonal Plants ◽  
Scientific Programme ◽  
Plant Research ◽  
Selection For ◽  
The Rose ◽  
Cut Rose ◽  
Location Interaction ◽  
Selection Of

BIOBREES is a co-operative scientific programme between Indonesia and The Netherlands, of which the rose part aims at breeding cut roses adapted to the tropical highland. Within that scope four direct plant characters of 62 cut rose genotypes in different physiological stages were studied. The genotypes originated from cross-breeding in 1995 and successive selection for cut rose properties in populations at Plant Research International, Wageningen, The Netherlands, in 1996. Plant stages stuAn died were (i) superior adult seedlings in Wageningen in 1996, (ii) clones grafted onto Natal Briar both in Wageningen and Cipanas in 1997. Clonal Plant Research International, Wageningen, Plant Research International, Wageningen, clonal plants in Cipanas had significantly shorter shoots, more thorns, smaller flowers and fewer petals than the adult seedlings in Wageningen. Clonal plants in Wageningen, however, had significantly longer shoots; more thorns, and larger flowers with more petals than the seedlings in Wageningen. Despite differences in level of expression, for each character the absence of genotype-location interaction was ascertained. The expression of characters as influenced by light (both quantitative and qualitative), temperature and cultivation is discussed in relation to selection of cut roses in the temperate zone, which are adapted to the tropical highland.

scholarly journals Sensitivity of Shoots and Roots of Young Watermelon Plants to End-of-day Red and Far-red Light

1997 ◽  
Vol 122 (4) ◽  
pp. 481-484
Author(s):  
Heather A. Hatt Graham ◽  
Dennis R. Decoteau
Keyword(s):  
Citrullus Lanatus ◽  
Red Light ◽  
Dry Mass ◽  
Stem Length ◽  
Hoagland Solution ◽  
Full Strength ◽  
Leaf Dry Mass ◽  
Half Strength

The sensitivity of shoots and roots to end-of-day (EOD) red (R) or far-red (FR) light on growth of `Sugar Baby' watermelon [Citrullus lanatus (Thunb.) Matsum & Nakai] was investigated. Plants were grown in full-strength Hoagland solution and treated for 14 days to 15 minutes EOD light in trial 1 and in half-strength Hoagland solution and treated for 10 days to EOD light in trial 2. Exposing shoots to EOD FR resulted in elongated petioles of leaves 1 to 3 (as counted from the cotyledons), internodes 1 to 3, and total stem length in both trials. Exposure to EOD FR resulted in increased stem and petiole dry mass in trial 1, whereas EOD FR resulted in increased root and leaf dry mass in trial 2. EOD FR exposure of roots increased the length of petiole 4 in trial 1. In general, shoots were more responsive than roots to the growth-regulating effects of EOD FR.

scholarly journals FLAME RETARDANTS EFFECTS ON THE INITIAL GROWTH OF Schizolobium amazonicum HUBER EX DUCKE

2021 ◽  
Vol 45 ◽  
Author(s):  
Elen Silma Oliveira Cruz Ximenes ◽  
Andréa Carvalho da Silva ◽  
Adilson Pacheco de Souza ◽  
Josiane Fernandes Keffer ◽  
Alison Martins dos Anjos ◽  
...  
Keyword(s):  
Flame Retardant ◽  
Leaf Area ◽  
Flame Retardants ◽  
Biomass Accumulation ◽  
Dry Mass ◽  
Initial Growth ◽  
Environmental Implications ◽  
Leaf Dry Mass ◽  
Height Increase ◽  
Positive Effect

ABSTRACT Flame retardants are efficient in fighting wildfire; however, their environmental implications, especially regarding the vegetation, need to be clarified. This work aimed at assessing the effects of flame retardant on the initial growth of Schizolobium amazonicum. Treatments consisted in applying different flame retardant concentrations via substrate and leaf: Phos-Chek WD-881® (0, 3.00, 6.00, 8.00 and 10.00 mL L-1), Hold Fire® (0, 7.00, 9.00, 12.00 and 15.00 mL L-1) and water-retaining polymer Nutrigel® used as alternative retardant (0, 0.25, 0.50, 0.75 and 1.00 g L-1). Growth analyses were carried out to assess the effects of these substances (10 repetitions per treatment). The aliquot of 10.00 mL L-1 of Phos-Chek WD881 applied on the leaves led to an increase of 70% in leaf area and 15% in seedling height. The same Phos-Chek concentration favored height increase (32%) and total dry mass accumulation (33%) throughout time. The concentration of 15 mL L-1 of Hold Fire® applied on leaves, compromised 45% the accumulation of dry biomass in the seedling. Initially, 1.00 g L-1 of Nutrigel® applied via substrate led to an increase of 70% in leaf area, 29% in plant height, and 89% in leaf dry mass. Therefore, Phos-Chek applied on leaves favored shoot growth in S. amazonicum. Hold Fire® applied on leaves impaired biomass accumulation in seedlings. Nutrigel® applied on substrate does not cause long-lasting damage to the initial growth of S. amazonicum. The aliquot of 0.50 g L-1 administered via polymer leave had positive effect on seedling shoot.

scholarly journals Stochastic Modeling Reveals Kinetic Heterogeneity in Post-replication DNA Methylation

2019 ◽  
Author(s):  
Luis Busto-Moner ◽  
Julien Morival ◽  
Arjang Fahim ◽  
Zachary Reitz ◽  
Timothy L. Downing ◽  
...  
Keyword(s):  
Mathematical Modeling ◽  
Dna Methylation ◽  
Rate Constants ◽  
Cytosine Methylation ◽  
Temporal Dynamics ◽  
Epigenetic Modification ◽  
Embryonic Stem ◽  
Likelihood Estimation ◽  
Dna Methyltransferases ◽  
Methylation Patterns

AbstractDNA methylation is a heritable epigenetic modification that plays an essential role in mammalian development. Genomic methylation patterns are dynamically maintained, with DNA methyltransferases mediating inheritance of methyl marks onto nascent DNA over cycles of replication. A recently developed experimental technique employing immunoprecipitation of bromodeoxyuridine labeled nascent DNA followed by bisulfite sequencing (Repli-BS) measures post-replication temporal evolution of cytosine methylation, thus enabling genome-wide monitoring of methylation maintenance. In this work, we combine statistical analysis and stochastic mathematical modeling to analyze Repli-BS data from human embryonic stem cells. We estimate site-specific kinetic rate constants for the restoration of methyl marks on >10 million uniquely mapped cytosines within the CpG (cytosine-phosphate-guanine) dinucleotide context across the genome using Maximum Likelihood Estimation. We find that post-replication remethylation rate constants span approximately two orders of magnitude, with half-lives of per-site recovery of steady-state methylation levels ranging from shorter than ten minutes to five hours and longer. Furthermore, we find that kinetic constants of maintenance methylation are correlated among neighboring CpG sites. Stochastic mathematical modeling provides insight to the biological mechanisms underlying the inference results, suggesting that enzyme processivity and/or collaboration can produce the observed kinetic correlations. Our combined statistical/mathematical modeling approach expands the utility of genomic datasets and disentangles heterogeneity in methylation patterns arising from replication-associated temporal dynamics versus stable cell-to-cell differences.

scholarly journals Clonal bamboo production based on in vitro culture

2020 ◽  
Vol 36 (4) ◽  
Author(s):  
Anatálya dos Santos Ribeiro ◽  
Alexssandra Jéssica Rondon de Figueiredo ◽  
Gabriela Cristina Rech Tormen ◽  
André Luís Lopes da Silva ◽  
Wellington Ferreira Campos ◽  
...  
Keyword(s):  
Activated Carbon ◽  
Large Scale ◽  
Culture Medium ◽  
Clonal Plant ◽  
Adventitious Rooting ◽  
Clonal Plants ◽  
Ex Vitro ◽  
Bambusa Vulgaris ◽  
In Vitro Establishment

Bamboo species are an alternative for the composition of forest plantations. However, their potential has not been explored due to the hard time in producing large-scale clonal plants. Thus, the aim this work was to evaluate the in vitro establishment, bud multiplication and ex vitro rooting of Bambusa vulgaris. The first experiment tested different systemic and contact fungicide solutions, based on exposure time, during the establishment phase. Established explants were subjected to evaluation of residual fungicide effect on subcultures during the multiplication and elongation phases. The second experiment evaluated the influence of activated carbon on ex vitro survival and on adventitious rooting. Explant immersion in liquid culture medium added with 1.0 mL of fungicide for 120 hours has favored the in vitro establishment and reduced fungal contamination. On the other hand, it favored the shoot emission of shoots per explant during the multiplication phase. Both rooting induction culture medium and mini-incubator system use were effective in enabling adventitious root formation. The presence of activated carbon in the rooting induction culture medium resulted in a higher clonal plant survival rate.  

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