Molecular evidence reveals introduced populations of Eiseniella tetraedra (Savigny, 1826) (Annelida, Lumbricidae) with European origins from protected freshwater ecosystems of the southern Alborz Mountains

2021 ◽  
Vol 72 (1) ◽  
pp. 44
Author(s):  
M. Javidkar ◽  
A. Abdoli ◽  
F. Ahmadzadeh ◽  
Z. Nahavandi ◽  
M. Yari

The presence of exotic earthworms has recently become a major concern and drawn significant attention to their potential effects on ecosystems and native invertebrate fauna. Although the occurrence of invasive annelids has been well recorded, their settlement in Iran is poorly documented. To investigate the biodiversity of aquatic Oligochaeta and to assess the presence of possible exotic species, DNA barcoding using the mitochondrial cytochrome c oxidase subunit 1 (COI) gene was conducted in two major protected rivers (Jajroud, Karaj) of the southern Alborz Mountains. As a result, new lineages of Tubifex, Haplotaxis and Lumbriculus were identified from Iran. Moreover, a semiaquatic lumbricid species, Eiseniella tetraedra, was unexpectedly found to be the most abundant species. The analyses showed the presence of six divergent lineages of E. tetraedra occurring in individual rivers. The presence of identical haplotypes shared between European, North American, Australian and Iranian localities, the sympatric accumulation of several distinct intraspecific lineages in the same rivers and the lack of a phylogeographic pattern reinforce the hypothesis of a possible inadvertent anthropogenic introduction. The relative abundance of lineages indicates a significant decline in the abundance of native oligochaetes, which may be linked to the preponderance of recently introduced European populations of E. tetraedra, probably mediated through human activities.

Author(s):  
J.-C. Huang ◽  
X.-Y. Li ◽  
Y.-P. Li ◽  
R.-S. Zhang ◽  
D.-B. Chen ◽  
...  

Samia ricini (Wm. Jones) and Samia cynthia (Drury) (Lepidoptera: Saturniidae) have been used as traditional sources of food as well as silk-producing insects. However, the phylogenetic relationship between the two silkworms remains to be addressed. In this study, the mitochondrial cytochrome c oxidase subunit 1 (COI) gene sequences corresponding to DNA barcodes from 13 Samia species were analysed, and a DNA barcode-based phylogenetic framework for these Samia species was provided. Phylogenetic analysis showed that multiple individuals of a species could be clustered together. Our analysis revealed a close relationship among Samia yayukae Paukstadt, Peigler and Paukstadt, Samia abrerai Naumann and Peigler, Samia kohlli Naumann and Peigler, Samia naessigi Naumann and Peigler, Samia naumanni Paukstadt, Peigler and Paukstadt, and Samia kalimantanensis Paukstadt and Paukstadt. The mixed clustering relationship and low Kimura-2-parameter (K2P) genetic distance (0.006) between individuals of S. ricini and Samia canningi (Hutton) indicated that the cultivated silkworm S. ricini was derived from the non-cultivated silkworm S. canningi. The remote phylogenetic relationship and high K2P genetic distance (0.039) indicated that S. ricini and S. cynthia are distinct species, thus providing solid molecular evidence that they had entirely independent origins. The relationships between S. kalimantanensis and S. naumanni and between S. cynthia and Samia wangi Naumann and Peigler, as well as the potential cryptic species within S. abrerai were also discussed. This is the first study to assess the DNA barcodes of the genus Samia, which supplements the knowledge of species identification and provides the first molecular phylogenetic framework for Samia species.


2021 ◽  
Vol 18 (1) ◽  
pp. 52-56
Author(s):  
S.O. Ajagbe ◽  
R.O. Ajagbe ◽  
O.S. Ariwoola ◽  
F.I. Abdulazeez ◽  
O.O. Oyewole ◽  
...  

Cichlids are highly abundant and commercially important fish in freshwater ecosystems in Nigeria. This study examined the diversity and abundance of cichlids in Ikere Gorge Reservoir. Four fishing villages were randomly selected from 12 fishing villages in Ikere Gorge Reservoir as sampling sites. Cichlids were sampled randomly and examined from fishermen catch in each selected fishing village; were identified with appropriate keys; the weight and abundance of the catches were recorded. The data obtained was subjected to descriptive statistical analysis using SPSS (Version 20.0) software to determine the abundance of fish species. Fish species diversity was carried out by using Palaeontological Statistics (PAST). Eight species of cichlids were sampled in Ikere Gorge but Sarotherodon galilaeus was the most abundant species while the least abundant species was Pelmatolapia mariae. It was observed that, cichlids were  abundant in rainy season than in the dry season. Likewise, cichlids were abundant in Ikere-gorge reservoir but they have low diversity. This may be as a result of unsustainable fishing pressure and deforestation of riparian forest and sedimentation in Ikere-gorge reservoir. Therefore, to maintain sustainable fishing activities and improve cichlids population in Ikeregorge reservoir, unsustainable activities in and around Ikere Gorge reservoir should be put under control. Keywords: Cichlidae; freshwater species; dominant; Sarotherodon galilaeus; Pelmatolapia mariae.


2019 ◽  
Vol 97 (4) ◽  
pp. 392-398 ◽  
Author(s):  
K.K.S. Layton ◽  
C.P.K. Warne ◽  
A. Nicolai ◽  
A. Ansart ◽  
J.R. deWaard

Global identification and monitoring programs for invasive species aim to reduce imminent impacts to biodiversity, ecosystem services, agriculture, and human health. This study employs a 658 base pair fragment of the cytochrome c oxidase subunit I (COI) gene to identify and categorize clades of the banded grove snail (Cepaea nemoralis (Linnaeus, 1758)) from native (European) and introduced (North American) ranges using a maximum-likelihood phylogeny and haplotype networks. This work corroborates the existence of eight clades within C. nemoralis and further identified three clades that were common to both Europe and North America (A, D, O). Clades A and D were found in eastern Canada, Ontario (Canada), and British Columbia (Canada), whereas clade O was restricted to Ontario, possibly introduced from Poland or central Europe. Haplotype networks suggest clade A was introduced from northern Europe, whereas clade D was introduced from western and central Europe. Networks contained many private haplotypes and a lack of haplotype sharing, suggesting strong genetic structure in this system, possibly resulting from reduced dispersal in this species. This study describes the contemporary distribution of C. nemoralis in Canada and demonstrates the efficacy of DNA barcoding for monitoring the spread of invasive species, warranting its widespread adoption in management policies.


Author(s):  
Anil Kumar Nehra ◽  
Hira Ram ◽  
P. S. Banerjee ◽  
Rajat Garg ◽  
M. Karikalan ◽  
...  

TPresent study describes species level identification of Trichinella spiralis of leopard origin from India using multiplex PCR and molecular characterization of the parasite based on sequencing of multiple genetic markers viz. 5S ribosomal DNA intergenic spacer region (5S ISR), partial mitochondrial large ribosomal subunit (Mt-lsr) and partial mitochondrial cytochrome c oxidase I (COI) genes. A single amplicons of 173 bp, indicative of T. spiralis was obtained in multiplex PCR. Further, specific PCR amplifications viz. 750 bp (5S ISR), 445 bp (Mt-lsr) and 850 bp (COI) were obtained for selected genetic markers. Homology search analysis of 5S-ISR, Mt-lsr gene and COI gene showed highest 99.6% identity with sequences originating from China (KT894074, T. spiralis), 98.6% similarity with T. spiralis China isolates (GU339127, GU339147) and 99.8% sequence homology with T. spiralis sequences originating from Belarus (MH119334), respectively. In the phylogenetic analysis, sequences of each selected genetic marker clustered together with published T. spiralis isolates only, which further confirmed species level identification of detected larvae as T. spiralis, although very few differences were noted with reference to relative positions. This is the first study from India, which provide molecular evidence on circulation of T. spiralis in wild animals.


2015 ◽  
Vol 21 (1) ◽  
pp. 51-62
Author(s):  
Raymond A. Kessler ◽  
Tyler R. Black ◽  
Stephen J. Fraley ◽  
Michael M. Gangloff

Abstract The crayfish genus Orconectes is widespread in North America and includes both regional endemics and several aggressively invasive species. Orconectes rusticus was recently discovered in three western North Carolina streams. We examined specimens from these localities as well as individuals from across the region using molecular and morphological analyses to verify diagnoses. We sequenced and analyzed a portion of the cytochrome c oxidase subunit (COI) gene and compared reads to GenBank reference sequences. We used mtDNA diagnoses to evaluate the utility of quantitative morphological analyses to correctly classify specimens. Comparisons with reference sequences revealed cryptic diversity among introduced populations. The population previously identified as O. rusticus in the Little Tennessee River is genetically most similar to O. juvenilis. Moreover, the putative un-described Cheoah Crayfish appears to be an introduced O. juvenilis population. Comparisons with topotypic and introduced O. juvenilis populations suggest the Little Tennessee River population originated in the lower Ohio Valley and that populations of this cryptic invader may be more widespread than previously believed. Additionally, these results demonstrate the susceptibility of reservoir fisheries to crayfish invasions. Future studies of invasive crayfish and putative new species should use molecular data to verify morphological diagnoses.


ZooKeys ◽  
2020 ◽  
Vol 925 ◽  
pp. 55-72
Author(s):  
Natdanai Likhitrakarn ◽  
Sergei I. Golovatch ◽  
Ekgachai Jeratthitikul ◽  
Ruttapon Srisonchai ◽  
Chirasak Sutcharit ◽  
...  

A new, giant species of Trachyjulus from a cave in southern Thailand is described, illustrated, and compared to morphologically closely related taxa. This new species, T. magnussp. nov., is much larger than all other congeners and looks especially similar to the grossly sympatric T. unciger Golovatch, Geoffroy, Mauriès & VandenSpiegel, 2012, which is widespread in southern Thailand. Phylogenetic trees, both rooted and unrooted, based on a concatenated dataset of the COI and 28S genes of nine species of Cambalopsidae (Trachyjulus, Glyphiulus, and Plusioglyphiulus), strongly support the monophyly of Trachyjulus and a clear-cut divergence between T. magnussp. nov. and T. unciger in revealing very high average p-distances of the COI gene (20.80–23.62%).


Author(s):  
Fernanda Sales de Araújo ◽  
Rafael Mazioli Barcelos ◽  
Tiago Antônio de Oliveira Mendes ◽  
Cláudio Mafra

Abstract Rickettsia felis is an obligate intracellular bacterium capable of infecting ticks, fleas, lice, and other arthropods. This bacterium is classified as a member of the Transitional Group (TRG) Rickettsia. It is known the evidence of R. felis mutualistic and obligatory relationship with some eukaryote organisms. However, there aren’t scientific accounts of R. felis and moths of the order Lepidoptera association. The current work reports the first identification of the bacteria R. felis in Phereoeca sp. For that, a polymerase chain reaction (PCR) assay using gltA, ompA, and ompB genes was used. The nucleotide sequences showed 100% of identity with other Rickettsia felis sequences. The genus-level identification of the moth larvae was performed by morphological taxonomic keys and PCR analysis of the cytochrome oxidase I (COI) gene. The nucleotide sequenced showed 94.94% similarity with the species Phereoeca praecox. However, with the low number of sequences deposited in the databases, the species was classified as Phereoeca sp. The results suggest that R. felis may develop in an organism without blood-feeding behavior (Lepidoptera), as it has been demonstrated for booklice (Psocoptera). Further investigation is necessary in order to confirm pathogenic or mutualistic association with moths.


Author(s):  
Toshie Wakabayashi ◽  
Tsunemi Kubodera ◽  
Mitsuo Sakai ◽  
Taro Ichii ◽  
Seinen Chow

It has been claimed that most squid species in the genus Onykia may be immature stages of species in the genus Moroteuthis. To evaluate the generic status of Moroteuthis and Onykia and to identify paralarvae collected in northern Hawaiian waters, we performed morphological investigation and nucleotide sequence analysis of the mitochondrial cytochrome oxidase I (COI) gene. Of 42 Onykia paralarvae (1.8–8.5 mm dorsal mantle length, DML) examined, 41 had a nucleotide sequence identical to that of M. robusta and one (designated Onykia sp. A) could not be assigned to any known Moroteuthis species. Nucleotide sequence diversity estimates based on Kimura's two-parameter distances between Onykia sp. A and Moroteuthis spp. (0.109–0.150) fell well within the range of congeneric species, suggesting that Onykia sp. A is a member of the genus Moroteuthis. Molecular data supported the conclusion that the genus Moroteuthis is a junior synonym of the genus Onykia. Morphological investigation revealed that paralarvae of O. robusta (= M. robusta) <4.0 mm DML were distinct from other Onykia paralarvae in the chromatophore pattern on the mantle. The key characters for distinguishing O. robusta paralarvae from Onykia sp. A were the number and arrangement of chromatophores on the funnel.


Crustaceana ◽  
2013 ◽  
Vol 86 (7-8) ◽  
pp. 871-889 ◽  
Author(s):  
V. Marusso ◽  
B. Trabucco ◽  
O. Nonnis ◽  
C. Maggi ◽  
S. Cecchetti ◽  
...  

Macroinvertebrates are commonly used as environmental indicators in monitoring programs. Among crustaceans, amphipod communities play a relevant role in describing changes of sea bottom features, being therefore well appreciated as indicators. In this study the effects of sediment management off the Tyrrhenian coasts of Latium (Central Italy) have been assessed, using amphipod assemblages to monitor changes occurred in soft bottom areas before and after the perturbation. Results showed a variation in number of both individuals and species, with Ampelisca brevicornis (Costa, 1853), A. diadema (Costa, 1853), A. typica (Bate, 1856) and A. tenuicornis Liljeborg, 1855 as the most abundant species before sediment management, and Autonoe spiniventris Della Valle, 1893, Urothoe pulchella (Costa, 1853) and Medicorophium runcicorne Della Valle, 1893 as the most abundant ones after the perturbation. Amphipod assemblage appeared modified after sediment management showing an increase of species linked to sandy substrates. It is known that amphipod species have different degrees of sensitivity to environmental impacts but deeper studies concerning single species are problematic, also because of the limitation of a correct taxonomic classification of specimens based on morphological characters. With the aim to set up a tool for a quick and reliable assignment of the abundant genus Ampelisca, we have carried out a preliminary survey of a 658 bp (base pair) fragment of the mitochondrial cytochrome oxidase I (COI) gene, showing that some possible mis-assignments can occur based only on morphological characters.


PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e4006 ◽  
Author(s):  
Clisten Fátima Staffen ◽  
Mari Dalva Staffen ◽  
Mariana Londero Becker ◽  
Sara Emelie Löfgren ◽  
Yara Costa Netto Muniz ◽  
...  

The consumption of raw fish has increased considerably in the West, since it is said to be potentially healthier than processed fish (for containing omega 3 and 6, essential amino acids and vitamins). However this potential benefit, as well as the taste, value and even the risk of extinction are not the same for all species of fish, constituting grounds for fraud. Using the principles of the DNA barcode we revealed mislabelling of fish in Japanese restaurants and fishmarkets in Florianópolis, a popular tourist capital in Brazil. We sequenced the COI gene of 65 samples from fisheries and 80 from restaurants and diagnosed 30% of mislabeled samples in fisheries and 26% in restaurants. We discussed that frauds may have occurred for different reasons: to circumvent surveillance on threatened species; to sell fish with sizes smaller than allowed or abundant species as being a much rarer species (law of supply); to induce product consumption using species with better taste. It should be noted that some substitutions are derived from incorrect identification and are not a fraudper se; they are due to confusion of popular names or misunderstanding by the sellers. Therefore, we suggest the implementation of a systematic regulatory program conducted by governmental agencies to reduce mislabelling in order to avoid further damage to the community (in health and financial issues) and fish stocks.


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