Relationships of the Porphyra (Bangiales, Rhodophyta) flora of the Falkland Islands: a molecular survey using rbcL and nSSU sequence data

2010 ◽  
Vol 23 (1) ◽  
pp. 27 ◽  
Author(s):  
Judy E. S. Broom ◽  
Wendy A. Nelson ◽  
Tracy J. Farr ◽  
Louise E. Phillips ◽  
Margaret Clayton
Keyword(s):  
South Africa ◽  
New Zealand ◽  
Southern Ocean ◽  
North Atlantic ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Molecular Data ◽  
Falkland Islands ◽  
Rbcl Gene ◽  
Molecular Survey

The phylogenetic relationships of Porphyra collected from the Falkland Islands have been examined using molecular data from two loci, the plastid rbcL gene and the nuclear nSSU gene, in conjunction with morphological observations. Nine species have been distinguished, belonging to four distinct lineages within the Bangiales, differing from one another by 16–137 substitutions in the rbcL gene. One species is closely related to P. amplissima, a north Atlantic taxon, three are resolved in a clade that includes several species from New Zealand, Australia and South Africa, as well as P. umbilicalis, whereas four others are more closely related to Southern Ocean species, including P. cinnamomea, P. virididentata and several as yet unnamed taxa from New Zealand, Australia and South Africa. Three species, one of which we identify as P. columbina, appear to be widely distributed in the Southern Ocean, with representatives on the Falkland Islands and on islands of the Australian and New Zealand subantarctic.

Molecular phylogeny of Australasian anopsobiine centipedes (Chilopoda : Lithobiomorpha)

2004 ◽  
Vol 18 (3) ◽  
pp. 235 ◽  
Author(s):  
Gregory D. Edgecombe ◽  
Gonzalo Giribet
Keyword(s):  
South Africa ◽  
New Species ◽  
New Zealand ◽  
New Caledonia ◽  
Sequence Data ◽  
Mitochondrial Protein ◽  
Molecular Data ◽  
12S Rrna ◽  
28S Rrna ◽  
16S Rna

Species assigned to the anopsobiine centipede genera Anopsobius Silvestri, 1899, and Dichelobius Attems, 1911, are widely distributed on fragments of the Gondwanan supercontinent, including temperate and tropical Australia, New Zealand, New Caledonia, the Cape region of South Africa, and southern South America. Phylogenetic relationships between Australasian and other Gondwanan Anopsobiinae are inferred based on parsimony and maximum likelihood analyses (via direct optimisation) of sequence data for five markers: nuclear ribosomal 18S rRNA and 28S rRNA, mitochondrial ribosomal 12S rRNA and 16S RNA, and the mitochondrial protein-coding cytochrome c oxidase subunit I. New molecular data are added for Anopsobius from South Africa and New Zealand, Dichelobius from New Caledonia, and a new species from Queensland, Australia, Dichelobius etnaensis, sp. nov. The new species is based on distinctive morphological and molecular data. The molecular phylogenies indicate that antennal segmentation in the Anopsobiinae is a more reliable taxonomic character than is spiracle distribution. The former character divides the Gondwanan clade into a 17-segmented group (Dichelobius) and a 15-segmented group (Anopsobius). Confinement of the spiracles to segments 3, 10 and 12 has at least two origins in the Gondwanan clade. The area cladogram for Dichelobius (Queensland (Western Australia + New Caledonia)) suggests a relictual distribution pruned by extinction.

Molecular phylogenetic relationships of Metastrongylus nematodes with emphasis on specimens from domestic pigs in Vietnam

2021 ◽  
Vol 95 ◽  
Author(s):  
N.V. Tuyen ◽  
N.T.K. Lan ◽  
P.N. Doanh
Keyword(s):  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Molecular Data ◽  
Global Scale ◽  
Single Infection ◽  
Parasitic Nematodes ◽  
Nucleotide Sequence Data ◽  
Wild Boars ◽  
Domestic Pigs ◽  
Molecular Phylogenetic

Abstract Lungworms of the genus Metastrongylus are parasitic nematodes in the respiratory tract of swine. Although they infect both wild boars and domestic pigs, studies on Metastrongylus infections in wild boars in Europe, the Americas and Africa are numerous, while those in domestic pigs are few. There are several studies analysing the molecular phylogenetic relationships of few individual Metastrongylus species with other nematode taxa, but there are no studies on the phylogenetic relationships of species within the genus Metastrongylus. In Southeast Asia, reports on swine lungworms are extremely scarce and do not include any nucleotide sequence data. Therefore, the aim of the present study is to survey Metastrongylus infection in domestic pigs raised in Dien Bien Province, Northern Vietnam, and to analyse the molecular phylogenetic relationships of Metastrongylus species. Based on morphological and molecular data, we identified two species: Metastrongylus apri and Metastrongylus pudendotectus. The prevalence of the former species was found to be significantly higher than the latter one (24.1% vs. 2.3%). We observed pigs exhibiting a coinfection with the two lungworm species or a single infection with only M. apri. However, we did not observe any pigs being infected with just M. pudendotectus. Vietnamese Metastrongylus specimens showed slight morphological and molecular differences compared to those from other countries. The molecular analyses revealed a close genetic relationship between M. apri and Metastrongylus salmi, while both these species were far distant from M. pudendotectus. The present study highlights the needs for further studies to clarify the morphological features and ecological and phylogenetic relationships of Metastrongylus species at the global scale.

A new species of the Gondwanan centipede Anopsobius (Chilopoda: Lithobiomorpha) from New South Wales, Australia

Zootaxa ◽  
2003 ◽  
Vol 204 (1) ◽  
pp. 1 ◽  
Author(s):  
GREGORY D. EDGECOMBE
Keyword(s):  
South Africa ◽  
New Species ◽  
New Zealand ◽  
New England ◽  
New South ◽  
New South Wales ◽  
Falkland Islands ◽  
Australian Species ◽  
South Wales ◽  
A New Species

Anopsobius wrighti n. sp., from the New England and Washpool-Gibraltar Range regions of northern New South Wales, is the first Australian species of the Gondwanan genus Anopsobius Silvestri, 1899 (Henicopidae: Anopsobiinae). Anopsobius is also known from Chile, Argentina, the Falkland Islands, South Africa, New Zealand, and the Chatham and Auckland Islands. The new species is closely related to the New Zealand species A. neozelanicus Silvestri, 1909.

Phylogeny and biogeography of the Australasian centipede Henicops (Chilopoda: Lithobiomorpha): A combined morphological and molecular approach

2006 ◽  
Vol 37 (3) ◽  
pp. 241-256 ◽  
Author(s):  
Donald Colgan ◽  
Gregory Edgecombe ◽  
Deirdre Sharkey
Keyword(s):  
New Zealand ◽  
Western Australia ◽  
New Caledonia ◽  
Sequence Data ◽  
Morphological Characters ◽  
Molecular Data ◽  
28S Rrna ◽  
Southeastern Australia ◽  
Lord Howe Island ◽  
Eastern Australia

AbstractThe lithobiomorph centipede Henicops is widely distributed in Australia and New Zealand, with five described species, as well as two species in New Caledonia and Lord Howe Island. Parsimony, maximum likelihood and Bayesian analyses of ca. 800 aligned bases of sequence data from 16S rRNA and 28S rRNA were conducted on a dataset including multiple individuals of Henicops species from populations sampled from different parts of species' geographic ranges, together with the allied henicopines Lamyctes and Easonobius. Morphological characters are included in parsimony analyses. Molecular and combined datasets unite species from eastern Australia and New Zealand to the exclusion of species from Western Australia, New Caledonia and Lord Howe Island. The molecular data favour these two geographic groupings as clades, whereas inclusion of morphology resolves New Caledonia, Lord Howe Island, southwest Western Australia and Queensland as successive sisters to southeastern Australia and New Zealand. The basal position of the Lord Howe Island species in the phylogeny favours a diversification of Australasian Henicops since the late Miocene unless the Lord Howe species originated in a biota that pre-dates the island. The molecular and combined data resolve the widespread morphospecies H. maculatus as paraphyletic, with its populations contributing to the geographic groupings New South Wales + New Zealand and Tasmania + Victoria.

New taxa in Drosanthemum and a new genus in Drosanthemeae (Ruschioideae, Aizoaceae)

Phytotaxa ◽  
2020 ◽  
Vol 459 (2) ◽  
pp. 139-154
Author(s):  
CORNELIA KLAK ◽  
PAVEL HANÁČEK ◽  
ODETTE CURTIS-SCOTT ◽  
ANSO LE ROUX ◽  
PETER V. BRUYNS
Keyword(s):  
South Africa ◽  
New Species ◽  
New Genus ◽  
Sequence Data ◽  
Morphological Characteristics ◽  
Molecular Data ◽  
Western Cape ◽  
Monotypic Genus ◽  
Nomenclatural Change ◽  
A New Species

A phylogeny of all nine subgenera of Drosanthemum, based on chloroplast sequence-data, is presented. The results confirm some previously published facts, e.g. that D. zygophylloides is sister to Drosanthemum. We propose to treat this species as a new monotypic genus, Lemonanthemum, which differs from Drosanthemum in features of the leaves and fruit-stalks. In Drosanthemum s.s., the small subg. Quadrata, characterized by 4-locular fruits, is highly supported as sister to the remainder of Drosanthemum (where fruits are 5-locular). Further, our data support the transfer of Delosperma pubipetalum to Drosanthemum (where a nomenclatural change is also made). The pubescent petals, 5-locular fruits with narrow covering membranes and downward-pointing hair-like papillae on the branches suggest that D. pubipetalum is close to D. papillatum and belongs to subg. Quastea. Another species, D. badspoortense, which had been placed in D. subg. Quastea on account of its narrow covering membranes, is shown to belong to Delosperma and also lacks the unique structure of the fruit-stalk of Drosanthemum. In addition, a new species, D. overbergense, is described from disjunct patches of remnant renosterveld within the Overberg and near Albertinia, in the Western Cape of South Africa. Morphological characteristics suggest that this species belongs to subg. Xamera, but this was not corroborated by our molecular data. Finally, a new name—Drosanthemum calcareum—is proposed for the illegitimate D. intermedium and a lectotype (at BOL) is designated for D. pubipetalum. The lectotypification of D. badspoortense is also proposed.

Phylogenetic relationships in the lizard genus Diplodactylus Gray and resurrection of Lucasium Wermuth (Gekkota, Diplodactylidae)

2007 ◽  
Vol 55 (3) ◽  
pp. 197 ◽  
Author(s):  
Paul M. Oliver ◽  
Mark N. Hutchinson ◽  
Steven J. B. Cooper
Keyword(s):  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Arid Zone ◽  
Sister Group ◽  
Molecular Data ◽  
The Other ◽  
Sister Group Relationship ◽  
Considerable Uncertainty ◽  
Biogeographic History ◽  
Species Groups

Diplodactylid geckos offer a model system for investigating the biogeographic history of Australia and adaptive radiations in the arid zone, but there is considerable uncertainty in the systematics of several key genera. We used sequence data from mitochondrial DNA to carry out a comprehensive analysis of phylogenetic relationships of geckos in the genus Diplodactylus. Parsimony and Bayesian analyses were highly concordant and allocated all species to one of two monophyletic clades, one comprising the species placed in the vittatus and conspicillatus species groups, the other comprising species placed in the stenodactylus and steindachneri species groups, plus D. byrnei, formerly in the vittatus group. The distinctness of these two clades is supported by external morphology of the digits, body and limb proportions, and osteology of the bones in the orbital region, and we use these characters to formally define the two clades as genera. We revive and expand the genus Lucasium for D. byrnei, D. steindachneri and the stenodactylus group, with the other species staying in a redefined Diplodactylus. The monotypic Rhynchoedura is distinct from Lucasium, although the Bayesian mtDNA analysis (but not parsimony) gives some support for a sister-group relationship between Lucasium and Rhynchoedura. Molecular data suggest that each of these clades represents a distinct radiation into semiarid and arid terrestrial habitats during the mid-Tertiary, well before the hypothesised Pliocene onset of major aridification.

Dietary variation of the squid Moroteuthis ingens at four sites in the Southern Ocean: stomach contents, lipid and fatty acid profiles

2003 ◽  
Vol 83 (3) ◽  
pp. 523-534 ◽  
Author(s):  
Katrina L. Phillips ◽  
Peter D. Nichols ◽  
George D. Jackson
Keyword(s):  
Fatty Acid ◽  
New Zealand ◽  
Southern Ocean ◽  
Stomach Contents ◽  
Total Lipid Content ◽  
Falkland Islands ◽  
Fatty Acid Profiles ◽  
Relative Proximity ◽  
Myctophid Fish ◽  
Dietary Variation

Specimens of the onychoteuthid squid Moroteuthis ingens were collected from four sites in the Southern Ocean: Macquarie Island, the Falkland Islands, the Chatham Rise (New Zealand) and the Campbell Plateau (New Zealand). Spatial variations in diet among these areas were investigated using stomach contents and lipid and fatty acid profiles. Myctophid fish were prominent prey items at all sites, and the diet at New Zealand sites contained temperate myctophid species that were not identified at other sites. The diet at the Falkland Islands differed considerably from other sites due to the large proportion of cephalopod prey that had been consumed by M. ingens. This is likely to be due to the absence of key myctophids, such as Electrona carlsbergi, and the abundance of smaller squid such as Loligo gahi and juvenile M. ingens over the Patagonian Shelf. Stomach contents data could not be used effectively to determine dietary differences between the Chatham Rise and Campbell Plateau, largely due to differences in sample sizes between these sites. Lipid class and fatty acid profiles of the digestive gland indicated that the diet of M. ingens differed significantly between the Chatham Rise and Campbell Plateau, despite the relative proximity of these sites. We conclude from total lipid content that this was due to a reduction in food availability to M. ingens at the Campbell Plateau. The highly productive waters of the Subtropical Front pass over the Chatham Rise, whereas the Campbell Plateau is situated in less productive sub-Antarctic water. Differences in oceanographic conditions are likely to have driven dietary variations between these two sites.

scholarly journals Contribution to Globularia phylogeny based on nuclear ribosomal spacer and two chloroplast DNA regions

2017 ◽  
Vol 118 (4) ◽  
Author(s):  
Kroata Hazler Pilepić ◽  
Maja Friščić ◽  
Ahmet Duran ◽  
Semir Maslo ◽  
Rade Garić ◽  
...  
Keyword(s):  
Chloroplast Dna ◽  
Maximum Parsimony ◽  
Nuclear Dna ◽  
Sequence Data ◽  
Leaf Tissue ◽  
Molecular Data ◽  
Rbcl Gene ◽  
Nuclear Its ◽  
Cellular Dna ◽  
Chloroplast Dna Regions

Background and Purpose: Molecular approach has a major impact on phylogenetic studies of plants, considering that it gives useful information about evolutionary events and relations on all taxonomic levels. The sequence data of the nuclear ITS and of two chloroplast regions, trnL-trnF spacer and rbcL gene, obtained from thirteen Globularia L. taxa, including five Anatolian endemics, representing six sections altogether, were analyzed in order to determine the relations between the European and the Anatolian species and get a better insight into the phylogeny of several closely related Globularia taxa.  Materials and Methods: Total cellular DNA was extracted from fresh or frozen leaf tissue of thirteen Globularia samples. The ITS regions of nuclear DNA and two chloroplast DNA regions were amplified and sequenced. Obtained nuclear and combined plastid data matrices were subjected to Maximum Parsimony analyses. Results and Conclusions: Molecular data that were obtained in this study indicate the existence of separate centers of diversification for the European and the Anatolian Globularia. The results provide support for relationships among the studied Anatolian endemic species and indications for a redefinition of affinities of some of the European species. The results presented herein are discussed along with available morphological, karyological, phytogeographical and molecular data. Keywords: Globularia, ITS, trnL-trnF, rbcL, Maximum Parsimony, Quaternary

The identity of Porphyra columbina (Bangiales, Rhodophyta) originally described from the New Zealand subantarctic islands

2010 ◽  
Vol 23 (1) ◽  
pp. 16 ◽  
Author(s):  
W. A. Nelson ◽  
J. E. S. Broom
Keyword(s):  
New Zealand ◽  
Growth Form ◽  
Sequence Data ◽  
Falkland Islands ◽  
Common Haplotype ◽  
Marginal Areas ◽  
Subantarctic Islands ◽  
Wide Range ◽  
Anatomical Characters ◽  
Subantarctic Region

Porphyra columbina Mont. (Bangiales, Rhodophyta) was collected in 1840 from the Auckland Islands in the New Zealand subantarctic region. This name has been applied to bladed Bangiales exhibiting a wide range of morphological forms, and found throughout the New Zealand region and in much of the southern hemisphere, particularly in Australia and Chile. By using morphological and anatomical characters as well as nSSU and rbcL sequence data, Montagne’s description of P. columbina is re-examined in the light of recent collections from the New Zealand region and the Southern Ocean. We conclude that P. columbina is primarily distributed in cold temperate conditions, including the Auckland, Campbell, Antipodes, Chatham and Falkland Islands, and is only rarely present on mainland New Zealand. Specimens from the type locality and other subantarctic locations have a rosette to ovate growth form and are typically less than 5 cm in height/width, with specimens from more northern locations including some ribbon-like growth forms. Thalli are purple to grey, bleaching golden green. Mature specimens have a distinctly spotted appearance, with conspicuous large, purple–red clusters of phyllospores and golden marginal areas of spermatangia. Five unique rbcL haplotypes, differing by 1–6 substitutions, were obtained from 26 specimens, with the most common haplotype found in specimens from the Auckland, Campbell and the Falkland Islands.

On the occurrence of the Arnoux's beaked whale (Berardius arnuxii) in Brazil

2003 ◽  
Vol 83 (4) ◽  
pp. 887-888 ◽  
Author(s):  
Salvatore Siciliano ◽  
Marcos César de Oliveira Santos
Keyword(s):  
South Africa ◽  
New Zealand ◽  
Falkland Islands ◽  
Beaked Whale ◽  
International Union ◽  
Antarctic Waters ◽  
Beaked Whales ◽  
Antarctic Continent ◽  
Ice Edge ◽  
The Antarctic

A specimen of Arnoux's beaked whale was recorded from the coast of Brazil on 4 August 1993. The specimen was identified from the skeleton in 1994. Arnoux's beaked whales (Berardius arnuxii) are known to have a circumpolar distribution in the Southern Hemisphere, from the Antarctic continent and ice edge (78°S) north to about 35°S in the southern Pacific, southern Atlantic, and Indian Ocean. Few sighting and stranding records are known. Its distribution in deep and cold waters, mainly far from the coast and in higher latitudes, is probably the main reason preventing the collection of more information on the biology of this species. It is still considered as ‘insufficiently known’ by the International Union for the Conservation of Nature and Natural Resources. Sighting records are more common in Antarctic waters, where some individuals sometimes become trapped in ice holes, and in the South Pacific. Strandings are relatively rare. About 30 strandings were reported around New Zealand, and single ones occurred in southern Australia, in South Africa, Argentina and the Falkland Islands. The majority of records occurred south of the latitude 40°S (Ross, 1984).

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