scholarly journals Quantitative proteomics reveals that dormancy-related proteins mediate the attenuation in mycobacterium strains

Virulence ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 2228-2246
Author(s):  
Hong Wang ◽  
Li Wan ◽  
Jiahui Shi ◽  
Tao Zhang ◽  
Huiming Zhu ◽  
...  
2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Yuheng Yang ◽  
Yang Yu ◽  
Chaowei Bi ◽  
Zhensheng Kang

Abstract Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is considered one of the most aggressive diseases to wheat production. In this study, we used an iTRAQ-based approach for the quantitative proteomic comparison of the incompatible Pst race CYR23 in infected and non-infected leaves of the wheat cultivar Suwon11. A total of 3,475 unique proteins were identified from three key stages of interaction (12, 24, and 48 h post-inoculation) and control groups. Quantitative analysis showed that 530 proteins were differentially accumulated by Pst infection (fold changes >1.5, p < 0.05). Among these proteins, 10.54% was classified as involved in the immune system process and stimulus response. Intriguingly, bioinformatics analysis revealed that a set of reactive oxygen species metabolism-related proteins, peptidyl–prolyl cis–trans isomerases (PPIases), RNA-binding proteins (RBPs), and chaperonins was involved in the response to Pst infection. Our results were the first to show that PPIases, RBPs, and chaperonins participated in the regulation of the immune response in wheat and even in plants. This study aimed to provide novel routes to reveal wheat gene functionality and better understand the early events in wheat–Pst incompatible interactions.


2018 ◽  
Vol 13 (1) ◽  
Author(s):  
Srikant Rangaraju ◽  
Eric B. Dammer ◽  
Syed Ali Raza ◽  
Tianwen Gao ◽  
Hailian Xiao ◽  
...  

2020 ◽  
Author(s):  
Xiaomin Xue ◽  
Shuguang Ren ◽  
Abolfazl Masoudi ◽  
Yuhong Hu ◽  
Xiaoshuang Wang ◽  
...  

Abstract BackgroundBabesia is a protozoan parasite in red blood cells of some vertebrates. Some species of Babesia can cause zoonoses and cause great harm. As the largest immune organ in mammals, the spleen plays an important role in defending against Babesia infection. When infected with Babesia, the spleen is seriously injured, but it still actively initiates immunomodulatory responses.MethodsIn order to explore the molecular mechanisms underlying the immune regulation and self-repair of the spleen in response to infection, this study used data-independent acquisition (DIA) quantitative proteomics to analyse changes in expression levels of global proteins and changes in phosphorylation modification in spleen tissue after Babesia microti infection in mice.ResultsAfter the mice were infected with B. microti, their spleen were seriously damaged.Using bioinfor-matics methods to analyze the dynamic changes of a large number of proteins, we found that spleen still initiated immune response to deal with the infection, in which immune-related proteins played an important role, including CTSD, IFI44, ILF2, ILF, and STAT5A. In addition, some proteins related to iron metabolism were also involved in the repair of spleen against B. microti infection, including serotransferrin, lactoferrin, TfR1, and GCL. At the same time, the expression and phosphorylation of proteins related to the growth and development of the spleen also changed, including PKC-δ and MAPK3/1, Grb2, and PAK2. ConclusionsImmune-related proteins, iron metabolism-related proteins and growth and development-related proteins play an important important role in the regulation of spleen injury and maintenance of homeostasis. This study will provide important bases for the diagnosis and treatment of babesiosis.


2021 ◽  
Vol 18 ◽  
Author(s):  
Xiang Yu ◽  
Xiaoyun Zhao ◽  
Yongqing Yang ◽  
Zhen Li

Background: Soil salinity is a major issue that seriously affects plant growth and cultivated land utilization. Salt tolerance is one of the most fundamental biological processes that ensures plants survival. SOS2 is one of the most important components of the Salt Overly Sensitive (SOS) signaling pathway, which maintains plant ion homeostasis under salt stress. The SOS2-related signaling pathways remain incompletely exploited especially at the proteomics level. Objective: In this paper, proteins potentially interacting with and regulated by SOS2 in Arabidopsis were identified. Methods: The proteomes of Arabidopsis Wild Type (WT) and SOS2-deficient mutant (sos2-2) exposed to 100 mM NaCl for 6 h were compared, proteins were identified using data-independent acquisition-based quantitative proteomics strategy. Results: A total of 7470 proteins were identified and quantified, 372 Differentially Expressed Proteins (DEP) were detected between WT and sos2-2 mutant under normal condition and 179 DEPs were identified under salt treatment. Functional analysis showed that the DEPs were mainly involved in protein binding and catalytic activity. Among the DEPs under salt stress, the protein expressions of AVP1, Photosystem II reaction center protein A, B, C, and stress-responsive protein (KIN2) were significantly up-regulated. LHCA1, LHCA2, LHCA4, ATPD and ATPE were significantly down-regulated. These proteins were involved in biological processes including: stress response, photosynthesis, transport and heat shock. Conclusion: These results revealed complexity of the functions of SOS2 in maintaining intracellular homeostasis, in addition to its function in sodium homeostasis. Plant salt resistance is not independent but closely related to metabolic processes including photosystem, ATP synthase, transport and other stress resistances.


PROTEOMICS ◽  
2017 ◽  
Vol 17 (5) ◽  
pp. 1600294 ◽  
Author(s):  
Lijun Zhong ◽  
Juntuo Zhou ◽  
Xi Chen ◽  
Jiao Liu ◽  
Zhen Liu ◽  
...  

PROTEOMICS ◽  
2017 ◽  
Vol 17 (5) ◽  
pp. 1770030 ◽  
Author(s):  
Lijun Zhong ◽  
Juntuo Zhou ◽  
Xi Chen ◽  
Jiao Liu ◽  
Zhen Liu ◽  
...  

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