The vertical distribution of tetA and intI1 in a deep lake is rather due to sedimentation than to resuspension

2020 ◽  
Vol 96 (2) ◽  
Author(s):  
Andrea Di Cesare ◽  
Ester M Eckert ◽  
Camille Cottin ◽  
Agnès Bouchez ◽  
Cristiana Callieri ◽  
...  
Keyword(s):  
Vertical Distribution ◽  
Water Column ◽  
Bacterial Communities ◽  
Antibiotic Resistance Genes ◽  
Tetracycline Resistance ◽  
Anthropogenic Pollution ◽  
Class 1 Integron ◽  
Integrase Gene ◽  
The Vertical Distribution ◽  
Sediment Interface

ABSTRACT Lakes are exposed to anthropogenic pollution including the release of allochthonous bacteria into their waters. Antibiotic resistance genes (ARGs) stabilize in bacterial communities of temperate lakes, and these environments act as long-term reservoirs of ARGs. Still, it is not clear if the stabilization of the ARGs is caused by a periodical introduction, or by other factors regulated by dynamics within the water column. Here we observed the dynamics of the tetracycline resistance gene (tetA) and of the class 1 integron integrase gene intI1 a proxy of anthropogenic pollution in the water column and in the sediments of subalpine Lake Maggiore, together with several chemical, physical and microbiological variables. Both genes resulted more abundant within the bacterial community of the sediment compared to the water column and the water-sediment interface. Only at the inset of thermal stratification they reached quantifiable abundances in all the water layers, too. Moreover, the bacterial communities of the water-sediment interface were more similar to deep waters than to the sediments. These results suggest that the vertical distribution of tetA and intI1 is mainly due to the deposition of bacteria from the surface water to the sediment, while their resuspension from the sediment is less important.

scholarly journals Identification and antibiotic resistance profiling of bacterial isolates from septicaemic soft-shelled turtles (Pelodiscus sinensis)

2017 ◽  
Vol 62 (No. 3) ◽  
pp. 169-177 ◽  
Author(s):  
TH Chung ◽  
SW Yi ◽  
BS Kim ◽  
WI Kim ◽  
GW Shin
Keyword(s):  
Antibiotic Resistance ◽  
Resistance Genes ◽  
Present Report ◽  
Antibiotic Resistance Genes ◽  
Tetracycline Resistance ◽  
Edwardsiella Tarda ◽  
Pelodiscus Sinensis ◽  
Class 1 Integron ◽  
Class 1 ◽  
M 14

The present study sought to identify pathogens associated with septicaemia in the Chinese soft-shelled turtle (Pelodiscus sinensis) and to characterise antibiotic resistance in these pathogens. Twenty-three isolates recovered from the livers of diseased soft-shelled turtles were genetically identified as Aeromonas hydrophila (n = 8), A. veronii (n = 3), Citrobacter freundii (n = 4), Morganella morganii (n = 3), Edwardsiella tarda (n = 2), Wohlfahrtiimonas chitiniclastica (n = 1), Chryseobacterium sp. (n = 1), and Comamonas sp. (n = 1). Most isolates (n = 21) were resistant to ampicillin whereas a low percentage of isolates was susceptible to aminoglycosides (amikacin, gentamicin, and tobramycin). PCR assays and sequence analysis revealed the presence of the qnrS2 and bla<sub>TEM</sub> antibiotic resistance genes in all isolates. The bla<sub>DHA-1</sub>, bla<sub>CTX-M-14</sub> and bla<sub>CMY-2</sub> genes were harboured by 17.4% (n = 4), 13.5% (n = 3) and 8.7% (n = 2) of the strains, respectively. One or more tetracycline resistance genes were detected in 60.9% (n = 14) of the isolates. Four isolates (17.4%) harboured single or multiple class 1 integron cassettes. Collectively, a variety of bacterial pathogens were involved in the occurrence of septicaemia in Chinese soft-shelled turtles and most of the isolates had multi-antibiotic resistant phenotypes. To our knowledge, the present report is the first to identify W. chitiniclastica and Comamonas sp. as causes of septicaemia in soft-shelled turtles and the first to identify Aeromonas spp. with bla<sub>CTX-M-14</sub> and bla<sub>DHA-1</sub> resistance genes.

scholarly journals Plant Species-Dependent Increased Abundance and Diversity of IncP-1 Plasmids in the Rhizosphere: New Insights Into Their Role and Ecology

2020 ◽  
Vol 11 ◽  
Author(s):  
Masaki Shintani ◽  
Eman Nour ◽  
Tarek Elsayed ◽  
Khald Blau ◽  
Inessa Wall ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Resistance Genes ◽  
Antibiotic Resistance Genes ◽  
Anthropogenic Pollution ◽  
Gene Clusters ◽  
Mobile Elements ◽  
Sequence Comparisons ◽  
Class 1 Integron ◽  
Class 1 ◽  
Abundance And Diversity

IncP-1 plasmids, first isolated from clinical specimens (R751, RP4), are recognized as important vectors spreading antibiotic resistance genes. The abundance of IncP-1 plasmids in the environment, previously reported, suggested a correlation with anthropogenic pollution. Unexpectedly, qPCR-based detection of IncP-1 plasmids revealed also an increased relative abundance of IncP-1 plasmids in total community DNA from the rhizosphere of lettuce and tomato plants grown in non-polluted soil along with plant age. Here we report the successful isolation of IncP-1 plasmids by exploiting their ability to mobilize plasmid pSM1890. IncP-1 plasmids were captured from the rhizosphere but not from bulk soil, and a high diversity was revealed by sequencing 14 different plasmids that were assigned to IncP-1β, δ, and ε subgroups. Although backbone genes were highly conserved and mobile elements or remnants as Tn501, IS1071, Tn402, or class 1 integron were carried by 13 of the sequenced IncP-1 plasmids, no antibiotic resistance genes were found. Instead, seven plasmids had a mer operon with Tn501-like transposon and five plasmids contained putative metabolic gene clusters linked to these mobile elements. In-depth sequence comparisons with previously known plasmids indicate that the IncP-1 plasmids captured from the rhizosphere are archetypes of those found in clinical isolates. Our findings that IncP-1 plasmids do not always carry accessory genes in unpolluted rhizospheres are important to understand the ecology and role of the IncP-1 plasmids in the natural environment.

scholarly journals Optimal estimation of catch by the continuous underway fish egg sampler based on a model of the vertical distribution of American plaice (Hippoglossoides platessoides) eggs

2006 ◽  
Vol 64 (1) ◽  
pp. 18-30 ◽  
Author(s):  
P. Pepin ◽  
K. A. Curtis ◽  
P. V. R. Snelgrove ◽  
B. de Young ◽  
J. A. Helbig
Keyword(s):  
Vertical Distribution ◽  
Water Column ◽  
Vertical Profile ◽  
Negative Binomial ◽  
Optimal Estimation ◽  
Eddy Diffusivity ◽  
Model Parameters ◽  
Error Structure ◽  
The Vertical Distribution ◽  
Hippoglossoides Platessoides

Abstract Pepin, P., Curtis, K.A., Snelgrove, P.V.R., de Young, B., and Helbig, J.A. 2007. Optimal estimation of catch by the continous underway fish egg sampler based on a model of the vertical distribution of American plaice (Hippoglossoides platessoides) eggs – ICES Journal of Marine Science, 64, 18–30. We investigate how the vertical stratification of the water column (specifically density) affects predictions of the catch of American plaice eggs (Hipploglossoides platessoides) from a fixed-depth sampler [the continuous underway fish egg sampler (CUFES)] relative to the integrated abundance in the water column measured in bongo tows. A steady-state model of the vertical distribution of fish eggs coupled with a simple model of the vertical profile of eddy diffusivity (i.e. mixing) is applied. Key model parameters are estimated through optimization of a one-to-one relationship between predicted and observed catches fit, using a generalized linear model with a Poisson, negative binomial, or gamma error structure. The incorporation of data on the vertical structure of the water column significantly improved the ability to forecast CUFES catches when using Poisson or negative binomial error structure, but not using a gamma distribution. Optimal maximum likelihood parameter estimates for eddy diffusivity and egg buoyancy fell within the range of expected values. The degree of uncertainty in the parameterization of eddy diffusivity suggests, however, that greater understanding of the forces that determine the vertical profile of mixing is critical to achieving strong predictive capabilities. The inverse problem of predicting integrated abundance from CUFES catches did not benefit from the environmental-driven model because of the high uncertainty in the catches from the CUFES.

Vertical distribution of pelagial zooplankton in a middle-sized dimictic valley reservoir

Biologia ◽  
2006 ◽  
Vol 61 (2) ◽  
Author(s):  
Martina Hudcovicová ◽  
Marian Vranovsky
Keyword(s):  
Vertical Distribution ◽  
Water Column ◽  
Seasonal Changes ◽  
Thermal Gradient ◽  
Summer Temperature ◽  
Zooplankton Abundance ◽  
Invertebrate Predation ◽  
Chaoborus Flavicans ◽  
Daphnia Cucullata ◽  
The Vertical Distribution

AbstractOur observations indicate the vertical distribution of zooplankton and its seasonal changes in Dubník II reservoir (Slovakia) are determined mainly by the thermal regime of the reservoir, by transparency, and by fish and invertebrate predation. During periods of circulation, zooplankton vertical distribution in the whole water column was more homogeneous, whilst during summer temperature stratification zooplankton concentrated in the epilimnion — rotifers in higher layers than crustaceans. During summer stagnation a steep thermal gradient occurred at the boundary of the epi-and hypolimnion and low temperature and low dissolved oxygen in hypolimnion offered a refuge for Chaoborus flavicans larvae against fish, enabling coexistence of vertebrate and invertebrate predation. This evidence supports our previous findings concerning dominance of rotifers in zooplankton and representation of crustaceans by small-bodied species in the study reservoir. Steep thermal gradient and the presence of Chaoborus larvae caused very low zooplankton abundance in the lower part of the water column and a reduction of cladocerans refuges against fish to layers of thermocline or closely under thermocline where Daphnia cucullata and Daphnia parvula were found. Our previous assumptions about the high density of zooplanktivorous fish in Dubník II reservoir are supported by the fact that these small cladocerans are represented by smaller individuals in the upper layers and bigger individuals in deeper layers.

scholarly journals Incidence, Distribution, and Spread of Tetracycline Resistance Determinants and Integron-Associated Antibiotic Resistance Genes among Motile Aeromonads from a Fish Farming Environment

2001 ◽  
Vol 67 (12) ◽  
pp. 5675-5682 ◽  
Author(s):  
Anja S. Schmidt ◽  
Morten S. Bruun ◽  
Inger Dalsgaard ◽  
Jens L. Larsen
Keyword(s):  
Antibiotic Resistance ◽  
Resistance Gene ◽  
Resistance Genes ◽  
Antibiotic Resistance Genes ◽  
Tetracycline Resistance ◽  
Class 1 Integron ◽  
Gene Cassettes ◽  
Class 1 Integrons ◽  
Resistance Determinants ◽  
Class 1

ABSTRACT A collection of 313 motile aeromonads isolated at Danish rainbow trout farms was analyzed to identify some of the genes involved in high levels of antimicrobial resistance found in a previous field trial (A. S. Schmidt, M. S. Bruun, I. Dalsgaard, K. Pedersen, and J. L. Larsen, Appl. Environ. Microbiol. 66:4908–4915, 2000), the predominant resistance phenotype (37%) being a combined oxytetracycline (OTC) and sulphadiazine/trimethoprim resistance. Combined sulphonamide/trimethoprim resistance (135 isolates) appeared closely related to the presence of a class 1 integron (141 strains). Among the isolates containing integrons, four different combinations of integrated resistance gene cassettes occurred, in all cases including a dihydrofolate reductase gene and a downstream aminoglycoside resistance insert (87 isolates) and occasionally an additional chloramphenicol resistance gene cassette (31 isolates). In addition, 23 isolates had “empty” integrons without inserted gene cassettes. As far as OTC resistance was concerned, only 66 (30%) out of 216 resistant aeromonads could be assigned to resistance determinant class A (19 isolates), D (n = 6), or E (n = 39); three isolates contained two tetracycline resistance determinants (AD, AE, and DE). Forty OTC-resistant isolates containing large plasmids were selected as donors in a conjugation assay, 27 of which also contained a class 1 integron. Out of 17 successful R-plasmid transfers to Escherichia coli recipients, the respective integrons were cotransferred along with the tetracycline resistance determinants in 15 matings. Transconjugants were predominantly tetApositive (10 of 17) and contained class 1 integrons with two or more inserted antibiotic resistance genes. While there appeared to be a positive correlation between conjugative R-plasmids andtetA among the OTC-resistant aeromonads, tetEand the unclassified OTC resistance genes as well as class 1 integrons were equally distributed among isolates with and without plasmids. These findings indicate the implication of other mechanisms of gene transfer besides plasmid transfer in the dissemination of antibiotic resistance among environmental motile aeromonads.

Vertical Distribution of Northern Shrimp (Pandalus borealis) Larvae in the Gulf of St Lawrence; Implications for Trophic Interactions and Transport

1994 ◽  
Vol 51 (1) ◽  
pp. 123-132 ◽  
Author(s):  
Patrick Ouellet ◽  
Denis Lefaivre
Keyword(s):  
Vertical Distribution ◽  
Water Column ◽  
Suspended Particle ◽  
Stage I ◽  
Vertical Position ◽  
Pandalus Borealis ◽  
Northern Shrimp ◽  
Residual Transport ◽  
Larval Emergence ◽  
The Vertical Distribution

In the northwestern Gulf of St. Lawrence in spring 1987 and 1988, stage I and II northern shrimp (Pandalus borealis) larvae were concentrated in the upper (<30 m) layers above the permanent pycnocline and coincident with subsurface chlorophyll a and suspended particle concentration maxima; this was above other macrozooplankton taxa in the daytime. Shrimp larvae maintained their vertical position relative to the maximum density gradient in the water column in daytime but moved towards the surface at night. Estimation of larval residual transport (~66 km) during the first developmental stage (12 d) corresponded to the horizontal scale of patches of stage I shrimp larvae in the northwest sector of the Gulf. The result is consistent with the suggestion of localized and short-duration larval emergence in the sector. The direction of mass transport and current speed were similar throughout the upper layers of the water column; consequently, the direction and magnitude of larval shrimp transport were not dependent on their vertical position. We suggest that the vertical distribution maintained by shrimp larvae is a mechanism to ensure maximum food availability and to optimize development time in the stratified water of the northwestern Gulf of St. Lawrence.

scholarly journals Sinking microplastics in the water column: simulations in the Mediterranean Sea

Ocean Science ◽  
2021 ◽  
Vol 17 (2) ◽  
pp. 431-453
Author(s):  
Rebeca de la Fuente ◽  
Gábor Drótos ◽  
Emilio Hernández-García ◽  
Cristóbal López ◽  
Erik van Sebille
Keyword(s):  
Vertical Distribution ◽  
Mediterranean Sea ◽  
Water Column ◽  
Large Scale ◽  
Circulation Model ◽  
Small Scale ◽  
The Mediterranean ◽  
Scale Turbulence ◽  
Non Gaussian ◽  
The Vertical Distribution

Abstract. We study the vertical dispersion and distribution of negatively buoyant rigid microplastics within a realistic circulation model of the Mediterranean sea. We first propose an equation describing their idealized dynamics. In that framework, we evaluate the importance of some relevant physical effects (inertia, Coriolis force, small-scale turbulence and variable seawater density), and we bound the relative error of simplifying the dynamics to a constant sinking velocity added to a large-scale velocity field. We then calculate the amount and vertical distribution of microplastic particles on the water column of the open ocean if their release from the sea surface is continuous at rates compatible with observations in the Mediterranean. The vertical distribution is found to be almost uniform with depth for the majority of our parameter range. Transient distributions from flash releases reveal a non-Gaussian character of the dispersion and various diffusion laws, both normal and anomalous. The origin of these behaviors is explored in terms of horizontal and vertical flow organization.

scholarly journals Vertical distribution of zooplankton in the water column of Lago Amapá, Rio Branco, Acre, Brazil

2004 ◽  
Vol 21 (2) ◽  
pp. 169-177 ◽  
Author(s):  
Erlei Cassiano Keppeler ◽  
Elsa Rodrigues Hardy
Keyword(s):  
Vertical Distribution ◽  
Water Column ◽  
Intermediate Disturbance Hypothesis ◽  
Intermediate Disturbance ◽  
Low Viscosity ◽  
Physico Chemical ◽  
Hypothesis Model ◽  
Different Depths ◽  
The Vertical Distribution ◽  
Disturbance Hypothesis

The aim of investigation was to study the model of vertical distribution in Lago Amapá, taking into consideration the seasonality of its zooplanktonic composition. Lago Amapá (10º2'36"S and 67º50'24"W) is located in the floodplain of the Rio Acre. Samplings were conducted at three different depths of the water column, to study the vertical distribution of zooplankton populations and determine some physico-chemical and biological parameters of Lago Amapá. Weekly samples were taken with a Van Dorn sampler. The species showed greater concentrations at the by means of water column. Thirty-eight zooplankton species were found in the samples represented by Rotifera (30), Cladocera (5) and Cyclopoida (3). The temperature of the water column showed a tendency toward relatively high values (about 30ºC) with little variation, consequently resulting in low viscosity. Based of Jaccard's index, it was seen that during the low-water phase, S1 and S3 of the three sampling stations studied, had greater similarity (Cj = 0.7058) in the middle of the water column. Lago Amapá showed characteristics in line with the intermediate disturbance hypothesis model, favoring colonization by opportunistic species such as rotifers.

Diel vertical distribution of fish larvae during the winter-mixing period in the Northwestern Mediterranean

2004 ◽  
Vol 61 (8) ◽  
pp. 1243-1252 ◽  
Author(s):  
A. Sabatés
Keyword(s):  
Vertical Distribution ◽  
Water Column ◽  
Fish Species ◽  
Fish Larvae ◽  
Distribution Patterns ◽  
Diel Variation ◽  
Surface Layers ◽  
Light Levels ◽  
Vertical Distributions ◽  
The Vertical Distribution

Abstract The vertical distributions of the larvae of shelf and oceanic fish species that spawn during the winter-mixing period in the Mediterranean are described from 22 vertically stratified plankton tows. Diel differences in the vertical distribution patterns in relation to physical data and potential prey abundance throughout the water column were examined. Even in absence of stratification, the larvae of the various fish species showed different patterns of vertical distribution and diel changes. The larvae of shelf-dwelling species were found in the surface layers, mainly above 50-m depth, and with some exceptions, with very little diel variation in depth distribution. Therefore, the vertical distribution of the larvae of these species coincided with the maximum concentrations of their potential food, nauplii and copepodite stages of copepods. The larvae of mesopelagic fishes showed deeper distributions in the water column and most of these species were located closer to the surface during the day than at night. Given the homogeneity of the physical characteristics throughout the water column, except for light, this behaviour may be determined not only by the higher concentration of prey in the surface layers but also by adequate light levels for feeding.

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