Soil microbial interconnections along ecological restoration gradients of lowland forests after slash-and-burn agriculture

Author(s):  
Qiang Lin ◽  
Francisco Dini-Andreote ◽  
Lingjuan Li ◽  
Ruma Umari ◽  
Vojtech Novotny ◽  
...  

Abstract Microbial interconnections in soil are pivotal to ecosystem services and restoration. However, little is known about how soil microbial interconnections respond to slash-and-burn agriculture and to the subsequent ecosystem restoration after the practice. Here, we used amplicon sequencing and co-occurrence network analyses to explore the interconnections within soil bacterial and fungal communities in response to slash-and-burn practice and a spontaneous restoration (spanning ca. 60 years) of tropical forests after the practice, in Papua New Guinea. We found significantly higher complexity and greater variations in fungal networks than in those of bacteria, despite no significant changes observed in bacterial or fungal networks across successional stages. Within most successional stages, bacterial core co-occurrences (co-occurrences consistently present across all sub-networks in a stage) were more frequent than those of fungi, indicating higher stability of interconnections between bacteria along succession. The stable interconnections occurred frequently between bacterial taxa (i.e. Sporosarcina, Acidimicrobiale and Bacillaceae) and between ectomycorrhizal fungi (Boletaceae and Russula ochroleuca), implying important ecological roles of these taxa in the ecosystem restoration. Collectively, our results provide new insight into microbial interconnections in response to slash-and-burn agriculture and the subsequent ecosystem restoration, thus promoting a better understanding of microbial roles in ecosystem services and restoration.

Agriculture ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 445
Author(s):  
Jessica Cuartero ◽  
Onurcan Özbolat ◽  
Virginia Sánchez-Navarro ◽  
Marcos Egea-Cortines ◽  
Raúl Zornoza ◽  
...  

Long-term organic farming aims to reduce synthetic fertilizer and pesticide use in order to sustainably produce and improve soil quality. To do this, there is a need for more information about the soil microbial community, which plays a key role in a sustainable agriculture. In this paper, we assessed the long-term effects of two organic and one conventional cropping systems on the soil microbial community structure using high-throughput sequencing analysis, as well as the link between these communities and the changes in the soil properties and crop yield. The results showed that the crop yield was similar among the three cropping systems. The microbial community changed according to cropping system. Organic cultivation with manure compost and compost tea (Org_C) showed a change in the bacterial community associated with an improved soil carbon and nutrient content. A linear discriminant analysis effect size showed different bacteria and fungi as key microorganisms for each of the three different cropping systems, for conventional systems (Conv), different microorganisms such as Nesterenkonia, Galbibacter, Gramella, Limnobacter, Pseudoalteromonas, Pantoe, and Sporobolomyces were associated with pesticides, while for Org_C and organic cultivation with manure (Org_M), other types of microorganisms were associated with organic amendments with different functions, which, in some cases, reduce soil borne pathogens. However, further investigations such as functional approaches or network analyses are need to better understand the mechanisms behind this behavior.


Metabolites ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 482
Author(s):  
Jae-Kwon Jo ◽  
Seung-Ho Seo ◽  
Seong-Eun Park ◽  
Hyun-Woo Kim ◽  
Eun-Ju Kim ◽  
...  

Obesity can be caused by microbes producing metabolites; it is thus important to determine the correlation between gut microbes and metabolites. This study aimed to identify gut microbiota-metabolomic signatures that change with a high-fat diet and understand the underlying mechanisms. To investigate the profiles of the gut microbiota and metabolites that changed after a 60% fat diet for 8 weeks, 16S rRNA gene amplicon sequencing and gas chromatography-mass spectrometry (GC-MS)-based metabolomic analyses were performed. Mice belonging to the HFD group showed a significant decrease in the relative abundance of Bacteroidetes but an increase in the relative abundance of Firmicutes compared to the control group. The relative abundance of Firmicutes, such as Lactococcus, Blautia, Lachnoclostridium, Oscillibacter, Ruminiclostridium, Harryflintia, Lactobacillus, Oscillospira, and Erysipelatoclostridium, was significantly higher in the HFD group than in the control group. The increased relative abundance of Firmicutes in the HFD group was positively correlated with fecal ribose, hypoxanthine, fructose, glycolic acid, ornithine, serum inositol, tyrosine, and glycine. Metabolic pathways affected by a high fat diet on serum were involved in aminoacyl-tRNA biosynthesis, glycine, serine and threonine metabolism, cysteine and methionine metabolism, glyoxylate and dicarboxylate metabolism, and phenylalanine, tyrosine, and trypto-phan biosynthesis. This study provides insight into the dysbiosis of gut microbiota and metabolites altered by HFD and may help to understand the mechanisms underlying obesity mediated by gut microbiota.


2021 ◽  
Vol 7 (7) ◽  
pp. 539
Author(s):  
Tamás Plaszkó ◽  
Zsolt Szűcs ◽  
Gábor Vasas ◽  
Sándor Gonda

Plants heavily rely on chemical defense systems against a variety of stressors. The glucosinolates in the Brassicaceae and some allies are the core molecules of one of the most researched such pathways. These natural products are enzymatically converted into isothiocyanates (ITCs) and occasionally other defensive volatile organic constituents (VOCs) upon fungal challenge or tissue disruption to protect the host against the stressor. The current review provides a comprehensive insight on the effects of the isothiocyanates on fungi, including, but not limited to mycorrhizal fungi and pathogens of Brassicaceae. In the review, our current knowledge on the following topics are summarized: direct antifungal activity and the proposed mechanisms of antifungal action, QSAR (quantitative structure-activity relationships), synergistic activity of ITCs with other agents, effects of ITCs on soil microbial composition and allelopathic activity. A detailed insight into the possible applications is also provided: the literature of biofumigation studies, inhibition of post-harvest pathogenesis and protection of various products including grains and fruits is also reviewed herein.


PLoS ONE ◽  
2014 ◽  
Vol 9 (2) ◽  
pp. e86042 ◽  
Author(s):  
Eben N. Broadbent ◽  
Angélica M. Almeyda Zambrano ◽  
Gregory P. Asner ◽  
Marlene Soriano ◽  
Christopher B. Field ◽  
...  

2018 ◽  
Author(s):  
Colin J. Brislawn ◽  
Emily B. Graham ◽  
Karl Dana ◽  
Peter Ihardt ◽  
Sarah J. Fansler ◽  
...  

ABSTRACTMicrobial community succession is a fundamental process that effects underlying functions of almost all ecosystems; yet the roles and fates of the most abundant colonizers are poorly understood. Does early abundance spur long term persistence? How do deterministic and stochastic processes influence the roles of founder species? We performed a succession experiment within a hypersaline microbial mat ecosystem to investigate how ecological processes contributed to the turnover of founder species. Bacterial and micro-eukaryotic founder species were identified from primary succession and tracked through a defined maturation period using 16S and 18S rRNA gene amplicon sequencing in combination with high resolution imaging that utilized stable isotope tracers to evaluate basic functional capabilities. The majority of the founder species did not maintain high relative abundances in later stages of succession. Turnover (versus nestedness) was the dominant process shaping the final community structure. We also asked if different ecological processes acted on bacteria versus eukaryotes during successional stages and found that deterministic and stochastic forces corresponded more with eukaryote and bacterial colonization, respectively. Our results show that taxa from different kingdoms, that share habitat in the tight spatial confines of a biofilm, were influenced by different ecological forces and time scales of succession.


2021 ◽  
Author(s):  
Bob W. Zwartendijk ◽  
H.J. (Ilja) van Meerveld ◽  
Ryan J. Teuling ◽  
Chandra P. Ghimire ◽  
L. Adrian Bruijnzeel

<p>In many tropical areas slash-and-burn agriculture is an important driver of forest loss. In areas where slash-and-burn agriculture has been practiced for decades, land cover is typically a mosaic of patches of remnant forest, fields under active cultivation, fallows in various stages of regrowth (ranging from young shrub to semi-mature), and degraded fire-climax grasslands. Although runoff generation mechanisms are expected to be different for these different patches, little quantitative information is available in this regard, particularly at the catchment scale and over longer time-scales (i.e., multiple slash-and-burn cycles).</p><p>We re-instrumented a 31 ha catchment in upland Eastern Madagascar, where slash-and-burn agriculture has been practiced for more than 70 years in 2015; it had been monitored between 1963 and 1972 as well<sup>1</sup>. We measured streamflow at two locations and overland flow and soil moisture for four hillside plots (0.05 – 1.93 ha): one plot under repeatedly coppiced and burned <em>Eucalyptus</em> and three plots under young shrub and tree fallows. One of the plots underwent rudimentary terracing in the past. We analysed the rainfall-runoff dynamics for 50 rainfall events (median 12 mm, maximum 71 mm).</p><p>For 60% of the events, the stormflow coefficient (minimum contributing area) was <3%, which is the proportion of valley-bottom wetlands and rice paddies in the catchment. Stable isotope sampling for five storm runoff events indicate a maximum total event-water contribution of 16%. However, instantaneous event-water contributions were as high as 66%. The hillside plot runoff response was dominated by saturation-excess overland flow and showed strong threshold behaviour in terms of the antecedent soil moisture storage in the upper 30 cm of the soil plus the event total rainfall amount (ASI + P). Average threshold values for overland flow occurrence ranged from 87 mm for the coppiced <em>Eucalyptus</em> to 137 mm for the young fallow plots (regardless of terrace presence). Stormflow also increased after an ASI+P-threshold was exceeded (100 mm based on the soil moisture sensors for the <em>Eucalyptus</em> plot and 150 mm for the sensors at the tree fallow plots).</p><p>These results indicate an increased hydrological connectivity between hillslopes and valley bottom under wetter conditions and that stormflow in the study catchment is strongly affected by variations in seasonal rainfall. The results will be used to validate a hydrological model to determine the net effect of concurrent changes in soil infiltrability and vegetation water use associated with forest loss and recovery on stormflow totals and the seasonal flow regime.</p><p><strong><sup>1</sup></strong>Bailly, C., de Coignac, G.B., Malvos, C., Ningre, J.M., and Sarrailh, J.M. (1974). Étude de l'influence du couvert naturel et de ses modifications á Madagascar. Expérimentations en bassins versants élémentaires. Cahiers Scientifiques, 4. Centre Scientifique Forestier Tropical, Nogent-sur-Marne, France, 114 pp.</p>


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