Evolution of the Integral Membrane Desaturase Gene Family in Moths and Flies

Genetics ◽  
2002 ◽  
Vol 162 (4) ◽  
pp. 1737-1752
Author(s):  
Douglas C Knipple ◽  
Claire-Lise Rosenfield ◽  
Rasmus Nielsen ◽  
Kyung Man You ◽  
Seong Eun Jeong
Keyword(s):  
Gene Family ◽  
Structural Diversity ◽  
Mate Recognition ◽  
Synonymous Substitution ◽  
Recognition System ◽  
Pheromone Biosynthesis ◽  
Primary Role ◽  
Genome Database ◽  
Species Specific ◽  
Pheromone Glands

Abstract Lepidopteran insects use sex pheromones derived from fatty acids in their species-specific mate recognition system. Desaturases play a particularly prominent role in the generation of structural diversity in lepidopteran pheromone biosynthesis as a result of the diverse enzymatic properties they have evolved. These enzymes are homologous to the integral membrane desaturases, which play a primary role in cold adaptation in eukaryotic cells. In this investigation, we screened for desaturase-encoding sequences in pheromone glands of adult females of eight lepidopteran species. We found, on average, six unique desaturase-encoding sequences in moth pheromone glands, the same number as is found in the genome database of the fly, Drosophila melanogaster, vs. only one to three in other characterized eukaryotic genomes. The latter observation suggests the expansion of this gene family in insects before the divergence of lepidopteran and dipteran lineages. We present the inferred homology relationships among these sequences, analyze nonsynonymous and synonymous substitution rates for evidence of positive selection, identify sequence and structural correlates of three lineages containing characterized enzymatically distinct desaturases, and discuss the evolution of this sequence family in insects.

BIOSYSTEMATICS OF THE GENUS EUXOA (LEPIDOPTERA: NOCTUIDAE). XVIH. COMPARATIVE BIOLOGY AND EXPERIMENTAL TAXONOMY OF THE SIBLING SPECIES EUXOA RIDMGSIANA (GRT.) AND EUXOA MAIMES (SM.)

1985 ◽  
Vol 117 (4) ◽  
pp. 481-493 ◽  
Author(s):  
J.R. Byers ◽  
D.L. Struble ◽  
J.D. Lafontaine
Keyword(s):  
Life Cycle ◽  
Reproductive Isolation ◽  
Sibling Species ◽  
Mate Recognition ◽  
Recognition System ◽  
Flight Period ◽  
Interspecific Differences ◽  
Mate Recognition System ◽  
The Difference ◽  
Species Specific

AbstractThe species previously recognized as Euxoa ridingsiana (Grt.) is shown to be composed of a sympatric pair of sibling species, Euxoa ridingsiana (Grt.) and Euxoa maimes (Sm.), which in the laboratory will produce viable F1 hybrids but no F2. Results of F1 sib and backcrosses show that the F1 males are fertile and the F1 females are infertile. In mating-bias tests conducted in laboratory cages, 74% of matings were conspecific and 26% interspecific. Differences in the diel periodicities of mating, which are about 2 h out of phase, may account for the mating bias. The duration of development of E. ridingsiana in the laboratory and its seasonal flight period in the field are about 2 weeks in advance of that of E. maimes. However, there is considerable overlap of the flight periods and, with the tendency of females of both species to mate several times, it is unlikely that the difference in seasonal emergence is enough to effect reproductive isolation. It is evident that, under natural conditions, reproductive isolation can be maintained entirely by species-specific sex pheromones. This mechanism of reproductive isolation is, however, apparently ineffective when moths are confined in cages in the laboratory.Biogeographic considerations suggest that the differences in life-cycle timing and mating periodicities might have been adaptations to adjust development and reproduction to prevailing ancestral environments. If the initial differentiation of the 2 species occurred in isolation and included at least an incipient shift in the pheromonal mate-recognition system, it is possible that upon reestablishment of contact between ancestral populations the differences in life-cycle timing and mating periodicities acting in concert could have effected substantial, albeit incomplete, reproductive isolation. Subsequent selection to reinforce assortative mating to preserve coadapted gene complexes could then have resulted in differentiation of discrete pheromonal systems and attainment of species status.

Swimming behaviour and photoresponses of the iridescent copepods, Sapphirina gastrica and Sapphirina opalina (Copepoda: Poecilostomatoida)

2004 ◽  
Vol 84 (4) ◽  
pp. 727-731 ◽  
Author(s):  
Jinho Chae ◽  
Shuhei Nishida
Keyword(s):  
Gradual Increase ◽  
Mate Recognition ◽  
Recognition System ◽  
Swimming Behaviour ◽  
Light Sources ◽  
Diel Variation ◽  
Light Conditions ◽  
Positive Phototaxis ◽  
Mate Recognition System ◽  
Species Specific

The swimming behaviour and photoresponses of the iridescent epipelagic copepods, Sapphirina gastrica and S. opalina were investigated in the laboratory. In continuous dark conditions, both species showed no significant diel variation in their swimming activities. When stimulated with light, they exhibited spiral-swimming in which the males showed a significantly higher speed and frequency of turning than the females. Both sexes of S. gastrica and S. opalina showed positive phototaxis at intensities higher than 0·05×1014 quanta  cm−2 s−1 for light sources of 430 nm and 580 nm. Sapphirina gastrica showed increased locomotion over a broad range of wavelengths from 430 nm to 580 nm, while S. opalina showed a gradual increase of activity with decreasing wavelength, with the highest value at 430 nm. The photoresponses of these two species suggest that light conditions play an important role in their daytime ascent and in determining the depth distributions that were observed in our previous study. It is suggested that the iridescence and fast spiral-swimming of males, and the species-specific photoresponses of both sexes constitute a putative mate recognition system in the open ocean.

scholarly journals Expansion of the fatty acyl reductase gene family shaped pheromone communication in Hymenoptera

eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Michal Tupec ◽  
Aleš Buček ◽  
Václav Janoušek ◽  
Heiko Vogel ◽  
Darina Prchalová ◽  
...  
Keyword(s):  
Gene Family ◽  
Functional Characterization ◽  
Gene Tree ◽  
Biological Significance ◽  
Fatty Acyl ◽  
Pheromone Biosynthesis ◽  
Bumble Bee ◽  
Pheromone Communication ◽  
Genomic Environment ◽  
Species Specific

Fatty acyl reductases (FARs) are involved in the biosynthesis of fatty alcohols that serve a range of biological roles. Insects typically harbor numerous FAR gene family members. While some FARs are involved in pheromone biosynthesis, the biological significance of the large number of FARs in insect genomes remains unclear.Using bumble bee (Bombini) FAR expression analysis and functional characterization, hymenopteran FAR gene tree reconstruction, and inspection of transposable elements (TEs) in the genomic environment of FARs, we uncovered a massive expansion of the FAR gene family in Hymenoptera, presumably facilitated by TEs. The expansion occurred in the common ancestor of bumble bees and stingless bees (Meliponini). We found that bumble bee FARs from the expanded FAR-A ortholog group contribute to the species-specific pheromone composition. Our results indicate that expansion and functional diversification of the FAR gene family played a key role in the evolution of pheromone communication in Hymenoptera.

scholarly journals The influence of contact chemical signals on mate recognition in an harpacticoid copepod

1998 ◽  
Vol 353 (1369) ◽  
pp. 745-751 ◽  
Author(s):  
Melissa A. Frey ◽  
Darcy J. Lonsdale ◽  
Terry W. Snell
Keyword(s):  
Mate Selection ◽  
Chemical Cues ◽  
Lectin Binding ◽  
Geographic Distance ◽  
Harpacticoid Copepod ◽  
Mate Guarding ◽  
Mate Recognition ◽  
Recognition System ◽  
Interspecific Crosses ◽  
Species Specific

Among copepods, reproduction is facilitated by a combination of sensory modalities, such as mechano– and chemoreception. The role of chemical communication in copepod mate recognition was assessed using behavioural bioassays that were based on precopulatory behaviours of an estuarine harpacticoid, Coullana canadensis , and the sibling species Coullana sp. Intra– and interspecific crosses demonstrated that males recognize genetically distinct conspecific and heterospecific females, indicating that prezygotic isolation remains incomplete. There was no association between the frequency of mate–guarding behaviour and geographic distance between populations of C. canadensis . However, reduced levels of interspecific mate guarding relative to intraspecific frequencies suggest the existence of a species–specific mate–recognition system. Lectins, which possess strong affinities for specific carbohydrate groups, were used to confirm that glycoproteins on the surface of females function as mate–recognition factors. Information regarding the chemical composition of these molecules was derived from observed effects of lectin binding to females on male mate–guarding behaviour. Mate guarding was inhibited within all tested populations when treated with Triticum vulgaris , a lectin that possesses an affinity for carbohydrates of the N–acetylglucosamine group. Surface glycoproteins responsible for mate recognition in the two species of Coullana may be glycosylated with monosaccharides from this group. Differential responses to lectin treatments suggested that composition of the contact chemical cues vary among populations of C. canadensis and between species. Yet, populations that appeared most similar based on shared lectin responses successfully discriminated against each other in mate–selection experiments. These findings indicate that contact chemical cues probably act in concert with additional factors to promote effective mate recognition and thereby contribute to reproductive success.

scholarly journals Genome-Wide Analysis of Terpene Synthase Gene Family in Mentha longifolia and Catalytic Activity Analysis of a Single Terpene Synthase

Genes ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 518
Author(s):  
Zequn Chen ◽  
Xiwu Qi ◽  
Xu Yu ◽  
Ying Zheng ◽  
Zhiqi Liu ◽  
...  
Keyword(s):  
Catalytic Activity ◽  
Essential Oils ◽  
Gene Family ◽  
Genome Sequence ◽  
Sequence Assembly ◽  
Terpene Synthase ◽  
Genome Sequence Assembly ◽  
Mentha Longifolia ◽  
Specific Expansion ◽  
Species Specific

Terpenoids are a wide variety of natural products and terpene synthase (TPS) plays a key role in the biosynthesis of terpenoids. Mentha plants are rich in essential oils, whose main components are terpenoids, and their biosynthetic pathways have been basically elucidated. However, there is a lack of systematic identification and study of TPS in Mentha plants. In this work, we genome-widely identified and analyzed the TPS gene family in Mentha longifolia, a model plant for functional genomic research in the genus Mentha. A total of 63 TPS genes were identified in the M. longifolia genome sequence assembly, which could be divided into six subfamilies. The TPS-b subfamily had the largest number of genes, which might be related to the abundant monoterpenoids in Mentha plants. The TPS-e subfamily had 18 members and showed a significant species-specific expansion compared with other sequenced Lamiaceae plant species. The 63 TPS genes could be mapped to nine scaffolds of the M. longifolia genome sequence assembly and the distribution of these genes is uneven. Tandem duplicates and fragment duplicates contributed greatly to the increase in the number of TPS genes in M. longifolia. The conserved motifs (RR(X)8W, NSE/DTE, RXR, and DDXXD) were analyzed in M. longifolia TPSs, and significant differentiation was found between different subfamilies. Adaptive evolution analysis showed that M. longifolia TPSs were subjected to purifying selection after the species-specific expansion, and some amino acid residues under positive selection were identified. Furthermore, we also cloned and analyzed the catalytic activity of a single terpene synthase, MlongTPS29, which belongs to the TPS-b subfamily. MlongTPS29 could encode a limonene synthase and catalyze the biosynthesis of limonene, an important precursor of essential oils from the genus Mentha. This study provides useful information for the biosynthesis of terpenoids in the genus Mentha.

scholarly journals Genome-Wide Identification and Expression Analysis of GA2ox, GA3ox, and GA20ox Are Related to Gibberellin Oxidase Genes in Grape (Vitis Vinifera L.)

Genes ◽  
2019 ◽  
Vol 10 (9) ◽  
pp. 680 ◽  
Author(s):  
He ◽  
Liang ◽  
Lu ◽  
Wang ◽  
Liu ◽  
...  
Keyword(s):  
Gene Family ◽  
Real Time ◽  
Expression Analysis ◽  
Bioinformatics Analysis ◽  
Expression Profiles ◽  
Biologically Active ◽  
Vitis Vinifera L ◽  
Genome Database ◽  
Qrt Pcr ◽  
Grape Genome

Gibberellin (GAs) plays the important role in the regulation of grape developmental and growth processes. The bioinformatics analysis confirmed the differential expression of GA2, GA3, and GA20 gibberellin oxidase genes (VvGA2oxs, VvGA3oxs, and VvGA20oxs) in the grape genome, and laid a theoretical basis for exploring its role in grape. Based on the Arabidopsis GA2oxs, GA3oxs, and GA20oxs genes already reported, the VvGA2oxs, VvGA3oxs, and VvGA20oxs genes in the grape genome were identified using the BLAST software in the grape genome database. Bioinformatics analysis was performed using software such as DNAMAN v.5.0, Clustalx, MapGene2Chrom, MEME, GSDS v.2.0, ExPASy, DNAsp v.5.0, and MEGA v.7.0. Chip expression profiles were generated using grape Affymetrix GeneChip 16K and Grape eFP Browser gene chip data in PLEXdb. The expression of VvGA2oxs, VvGA3oxs, and VvGA20oxs gene families in stress was examined by qRT-PCR (Quantitative real-time-PCR). There are 24 GAoxs genes identified with the grape genome that can be classified into seven subgroups based on a phylogenetic tree, gene structures, and conserved Motifs in our research. The gene family has higher codon preference, while selectivity is negative selection of codon bias and selective stress was analyzed. The expression profiles indicated that the most of VvGAox genes were highly expressed under different time lengths of ABA (Abscisic Acid) treatment, NaCl, PEG and 5 °C. Tissue expression analysis showed that the expression levels of VvGA2oxs and VvGA20oxs in different tissues at different developmental stages of grapes were relatively higher than that of VvGA3oxs. Last but not least, qRT-PCR (Real-time fluorescent quantitative PCR) was used to determine the relative expression of the GAoxs gene family under the treatment of GA3 (gibberellin 3) and uniconazole, which can find that some VvGA2oxs was upregulated under GA3 treatment. Simultaneously, some VvGA3oxs and VvGA20oxs were upregulated under uniconazole treatment. In a nutshell, the GA2ox gene mainly functions to inactivate biologically active GAs, while GA20ox mainly degrades C20 gibberellins, and GA3ox is mainly composed of biologically active GAs. The comprehensive analysis of the three classes of VvGAoxs would provide a basis for understanding the evolution and function of the VvGAox gene family in a grape plant.

scholarly journals Genome-wide identification of the 14-3-3 gene family and its participation in floral transition by interacting with TFL1/FT in Apple

2020 ◽  
Author(s):  
Xiya Zuo ◽  
Shixiang Wang ◽  
Wen Xiang ◽  
Huiru Yang ◽  
Muhammad Mobeen Tahir ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Profiles ◽  
Expression Patterns ◽  
Floral Transition ◽  
Bimolecular Fluorescence Complementation ◽  
Pcr Analysis ◽  
Transcriptional Responses ◽  
Genome Database ◽  
Reverse Transcription Pcr ◽  
Conserved Core

Abstract Background: Apple (Malus domestica Borkh.) is one of the most popular cultivated fruit crops in China. Apple floral transition is an important process but liable to be affected by various environmental factors. The 14-3-3 proteins are involved in regulating diverse biological processes in plants, and some 14-3-3 members play vital roles in flowering. However, little information was available about the 14-3-3 members in apple.Results: In the current study, we identified eighteen 14-3-3 gene family members from the apple genome database, designated MdGF14a to MdGF14r. The isoforms possess a conserved core region comprising nine antiparallel α-helices and divergent N and C termini. According to their structural and phylogenetic features, Md14-3-3 proteins could be classified into two major evolutionary branches, the epsilon (ɛ) group and the non-epsilon (non-ɛ) group. Moreover, expression profiles derived from transcriptome data and quantitative real-time reverse transcription PCR analysis showed diverse expression patterns of Md14-3-3 genes in various tissues and in response to different sugars and hormone treatments during the floral transition phase. Four Md14‑3-3 isoforms (MdGF14a, MdGF14d, MdGF14i, and MdGF14j) exhibiting prominent transcriptional responses to sugars and hormones were selected for further investigation. Furthermore, yeast two-hybrid and bimolecular fluorescence complementation experiments showed that the four Md14-3-3 proteins interact with key floral integrators, MdTFL1 (TERMINAL FLOWER1) and MdFT (FLOWERING LOCUS T). Subcellular localization of four selected Md14-3-3 proteins demonstrated their localization in both the cytoplasm and nucleus.Conclusion: We identified the Md14-3-3s family in apple comprehensively. Certain Md14-3-3 genes are expressed predominantly during the apple floral transition stage, and may participate in the regulation of flowering through association with flower control genes. Our results provide a preliminary framework for further investigation into the roles of Md14-3-3s in floral transition.

scholarly journals Genome-wide identification of the 14-3-3 gene family and its participation in floral transition by interacting with TFL1/FT in Apple

2020 ◽  
Author(s):  
Xiya Zuo ◽  
Shixiang Wang ◽  
Wen Xiang ◽  
Huiru Yang ◽  
Muhammad Mobeen Tahir ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Profiles ◽  
Expression Patterns ◽  
Economic Value ◽  
Floral Transition ◽  
Bimolecular Fluorescence Complementation ◽  
Pcr Analysis ◽  
Transcriptional Responses ◽  
Genome Database ◽  
Reverse Transcription Pcr

Abstract Background: Apple (Malus domestica Borkh.) is a popular cultivated fruit crop with high economic value in China. Apple floral transition is an important process but liable to be affected by various environmental factors. The 14-3-3 proteins are involved in regulating diverse biological processes in plants, and some 14-3-3 members play vital roles in flowering. However, little information was available about the 14-3-3 members in apple.Results: In the current study, we identified eighteen 14-3-3 gene family members from the apple genome database, designated MdGF14a to MdGF14r. The isoforms possess a conserved core region comprising nine antiparallel α-helices and divergent N and C termini. According to their structural and phylogenetic features, Md14-3-3 proteins could be classified into two major evolutionary branches, the epsilon (ɛ) group and the non-epsilon (non-ɛ) group. Moreover, expression profiles derived from transcriptome data and quantitative real-time reverse transcription PCR analysis showed diverse expression patterns of Md14-3-3 genes in various tissues and in response to different sugars and hormone treatments during the floral transition phase. Four Md14‑3-3 isoforms (MdGF14a, MdGF14d, MdGF14i, and MdGF14j) exhibiting prominent transcriptional responses to sugars and hormones were selected for further investigation. Furthermore, yeast two-hybrid and bimolecular fluorescence complementation experiments showed that the four Md14-3-3 proteins interact with key floral integrators, MdTFL1 (TERMINAL FLOWER1) and MdFT (FLOWERING LOCUS T). Subcellular localization of four selected Md14-3-3 proteins demonstrated their localization in both the cytoplasm and nucleus.Conclusion: We identified the Md14-3-3s family in apple comprehensively. Certain Md14-3-3 genes are expressed predominantly during the apple floral transition stage, and may participate in the regulation of flowering through association with flower control genes. Our results provide a preliminary framework for further investigation into the roles of Md14-3-3s in floral transition.

scholarly journals Acute Plasmodium chabaudi chabaudi Malaria Infection Induces Antibodies Which Bind to the Surfaces of Parasitized Erythrocytes and Promote Their Phagocytosis by Macrophages In Vitro

1998 ◽  
Vol 66 (9) ◽  
pp. 4080-4086 ◽  
Author(s):  
Maria M. Mota ◽  
K. Neil Brown ◽  
Anthony A. Holder ◽  
William Jarra
Keyword(s):  
Parasite Clearance ◽  
Enzyme Linked Immunosorbent Assay ◽  
Antibody Activity ◽  
Parasite Line ◽  
Primary Role ◽  
Plasmodium Chabaudi ◽  
Species Specific ◽  
Cellular Immune ◽  
Variant Line

ABSTRACT CBA/Ca mice infected with 5 × 104 Plasmodium chabaudi chabaudi AS-parasitized erythrocytes experience acute but self-limiting infections of relatively short duration. Parasitemia peaks (∼40% infected erythrocytes) on day 10 or 11 and is then partially resolved over the ensuing 5 to 6 days, a period referred to as crisis. How humoral and cellular immune mechanisms contribute to parasite killing and/or clearance during crisis is controversial. Humoral immunity might be parasite variant, line, or species specific, while cellular immune responses would be relatively less specific. For P. c. chabaudi AS, parasite clearance is largely species and line specific during this time, which suggests a primary role for antibody activity. Accordingly, acute-phase plasma (APP; taken fromP. c. chabaudi AS-infected mice at day 11 or 12 postinfection) was examined for the presence of parasite-specific antibody activity by enzyme-linked immunosorbent assay. Antibody binding to the surface of intact, live parasitized erythrocytes, particularly those containing mature (trophozoite and schizont) parasites, was demonstrated by immunofluorescence in APP and the immunoglobulin G (IgG)-containing fraction thereof. Unfractionated APP (from P. c. chabaudi AS-infected mice), as well as its IgG fraction, specifically mediated the opsonization and internalization of P. c. chabaudi AS-parasitized erythrocytes by macrophages in vitro. APP from another parasite line (P. c. chabaudi CB) did not mediate the same effect against P. c. chabaudi AS-parasitized erythrocytes. These results, which may represent one mechanism of parasite removal during crisis, are discussed in relation to the parasite variant, line, and species specificity of parasite clearance during this time.

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