scholarly journals Occult Talaromyces marneffei Infection Unveiled by the Novel Mp1p Antigen Detection Assay

2020 ◽  
Vol 7 (11) ◽  
Author(s):  
Vo Trieu Ly ◽  
Nguyen Tat Thanh ◽  
Nguyen Thi Mai Thu ◽  
Jasper Chan ◽  
Jeremy N Day ◽  
...  

Abstract Talaromyces marneffei causes fatal invasive mycosis in Southeast Asia. Diagnosis by culture has limited sensitivity and can result in treatment delay. We describe the use of a novel Mp1p enzyme immunoassay (EIA) to identify blood culture–negative talaromycosis, subsequently confirmed by bone marrow cultures. This EIA has the potential to speed diagnosis, enabling early therapy initiation.

Author(s):  
Christina Hoffmann ◽  
Peter Hoffmann ◽  
Mathias Zimmermann

AbstractThe timely detection of severe inflammatory conditions is of great importance for early therapy initiation and the patient’s prognosis. The complex humoral and cellular processes involved in inflammation offer many opportunities for diagnostic testing, which are still unused in clinical practice. We investigated the dynamics of four established and two novel potential markers during the onset and resolution of a high-grade inflammation.We retrospectively analyzed C-reactive protein and procalcitonin concentrations, leukocyte and thrombocyte counts, granularity index, and δ-hemoglobin measured in peripheral blood samples of patients undergoing inflammation diagnostics between September 2010 and November 2010. Data from a consecutive sample of 53,968 patients were available.Trajectories for the parameters’ dynamics during the onset and resolution of a high-grade inflammation were calculated with a locally weighted scatter plot smoothing method. The leukocyte count trajectories did not exceed the reference range.We were able to elucidate the parameter dynamics with time coordinates rounded to the nearest hour and a follow-up of 168 h.


Author(s):  
M.E. (Ewoud) Baarsma ◽  
Jeanine Ursinus ◽  
Hans L. Zaaijer ◽  
Herman Kuiper ◽  
Joppe W. Hovius

Objectives Serodiagnosis of Lyme borreliosis (LB) comes with several drawbacks, among which limited sensitivity in early disease. This study assesses the sensitivity and specificity of the novel BioPlex 2200 Lyme IgG & Lyme IgM assays. It also assesses potential improvements to the assays through ROC-analysis. Methods The BioPlex assays were performed on sera of 158 Dutch patients with physician-confirmed LB (both early localized and disseminated), 800 healthy blood donors from the Netherlands and 90 cross-reactive controls. The BioPlex assays were compared with two commercial enzyme immunoassays (Euroimmun/C6-ELISA) and one immunoblot (recomLine). Results The highest sensitivity in early LB was achieved with the BioPlex assays, which outperformed the Euroimmun and C6-ELISA (Biopl: 81/88, 92.1%; Eur: 64/88, 72.7%; C6: 72/88, 81.8%). Sensitivity of all assays was comparable in patients with disseminated LB. The BioPlex assays were outperformed in terms of specificity (all healthy blood donors, Biopl: 571/800, 71.4%; Eur: 711/800, 88.9%; C6: 727/800, 90.9%), but further analyses showed promising avenues following cut-off optimization. ROC-analysis showed 2/6 antigens of the combined BioPlex IgG & IgM assays had significantly higher AUCs than the others. Potential modified versions of the assays based on these antigens largely outperformed the Euroimmun & C6-EIA in EM patients (Biopl: 81/80, 92.1%), while maintaining a comparable or even higher specificity (Biopl: 714/800, 89.3%). Conclusions The BioPlex 2200 Lyme IgG & Lyme IgM assays are promising tools for the serodiagnosis of early LB, with the potential to be used as a standalone test. Further research is necessary to validate the findings of this discovery cohort.


Author(s):  
Betial Asmerom ◽  
Ian Drobish ◽  
Britanny Winckler ◽  
Leslie Chiang ◽  
Lauge Farnaes ◽  
...  

Abstract Disseminated gonococcal infection (DGI) often manifests as gonococcal arthritis and may carry significant morbidity. However, diagnosis remains elusive due to limited sensitivity of available diagnostic tests. We used metagenomic next-generation sequencing to detect Neisseria gonorrhoeae from culture-negative joint aspirates of 2 patients with clinically diagnosed DGI.


2021 ◽  
Author(s):  
David Aciole Barbosa ◽  
Alexandre Santos Simeone ◽  
Ana Carolina Humberto ◽  
Yara Natercia Lima Faustino de Maria ◽  
Regina Costa de Oliveira ◽  
...  

Abstract Previous genomic/transcriptomic analyses of Talaromyces marneffei (TM) unravelled relevant pathogenicity-related elements, as well as chromosomal regions potentially involved with the production of non-coding RNAs (ncRNAs), which have been parsimoniously reported in fungi. This manuscript describes a comprehensive pan-transcriptome assembly for TM that identifies a series of previously undetected genetic elements in this emerging pathogenic fungus. Our results confirm that ~58.28% of the 9,480 genes currently annotated in the TM genome are, in fact, transcribed in vivo and that ~23.6% of them may display alternative isomorphs. Moreover, we identified 585 transcripts that do not match any gene currently mapped in the genome, represented by 90 coding transcripts and 140 ncRNAs, including 48 long non-coding RNAs (lncRNAs). Overall, we expect that the novel elements described herein may contribute to improve the currently available Talaromyces databases and foster studies aiming at characterizing lncRNA-mediated gene expression control in fungi.


Author(s):  
Lu Guo ◽  
Xuehan Sun ◽  
Xinge Wang ◽  
Chen Liang ◽  
Haiping Jiang ◽  
...  

AbstractThe novel coronavirus (CoV) disease termed COVID-19 (Coronavirus Disease-19) caused by SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus-2) is causing a massive pandemic worldwide, threatening public health systems across the globe. During this ongoing COVID-19 outbreak, nucleic acid detection has played an important role in early diagnosis. Here we report a SARS-CoV-2 detection protocol using a CRISPR-based CRISPR diagnostic platform - CDetection (Cas12b-mediated DNA detection). By combining sample treatment protocols and nucleic acid amplification methods with CDetection, we have established an integrated viral nucleic acid detection platform - CASdetec (CRISPR-assisted detection). The detection limit of CASdetec for SARS-CoV-2 pseudovirus is 1 × 104 copies/mL, with no cross reactivity observed. Our assay design and optimization process can provide guidance for future CRISPR-based nucleic acid detection assay development and optimization.


Blood ◽  
2016 ◽  
Vol 128 (22) ◽  
pp. 2219-2219
Author(s):  
Carmen Lau ◽  
Valkal Bhatt ◽  
Parastoo B. Dahi ◽  
Sean Devlin ◽  
Yeon Yoo ◽  
...  

Abstract Introduction: Unrelated donor CB transplantation (CBT) is effective therapy for patients (pts) with high-risk hematologic malignancies without suitable adult donors. CBT, however, can be complicated by CMV infection in seropositive recipients with viremia rates as high as 100%. Moreover, CMV infection is associated with increased transplant-related mortality (TRM) in some reports. Therefore, our center is investigating: 1) the efficacy of pre-transplant ganciclovir (GAN) prophylaxis, 2) the efficacy of early pre-emptive therapy based on frequent serial qPCR monitoring, & 3) anti-viral therapy toxicities. The aim of this strategy is to rapidly eradicate viremia & thereby prevent disease without prohibitive toxicity. Methods: Eligible pts were adult CMV seropositive 1st allograft CB recipients transplanted 3/2013-2/2016. Pts received Cy 50/Flu 150/Thio 5-10/TBI 400 cGy myeloablative conditioning + CSA/MMF (no ATG). GAN prophylaxis (5 mg/kg IV daily) was given days -7 to -2. Viremia was evaluated by qPCR (lower detection limit 137 copies/ml) twice weekly from day +14 or earlier if indicated. Treatment for viremia was usually initiated at 1st or 2nd qPCR positivity. Foscarnet (FOS), GAN or valganciclovir (VALGAN) dosing (maintenance vs induction) was selected based on viremia level & assessment of severe infection vs toxicity risk. CMV disease was treated with induction dosing. CMV response was defined as 3 consecutive negative qPCR & no evidence of disease. Results: 42 CBT recipients [median 51 years (range 23-66), 33 acute leukemias, 6 MDS/MPD, 3 lymphomas] received double unit grafts [median donor-recipient HLA-allele match 5/8 (range 2-7/8) & infused CD34+ cell dose 1.3 (range 0.2-3.2) x 105/kg/unit]. 98% of pts engrafted (1 graft failure unrelated to CMV) & 86% (26 gr. II, 7 gr. III, 3 gr. IV) had gr. II-IV aGVHD by day 100 (median onset 29 days, range 19-35). Of the 42 pts, 35 reactivated CMV in the first 100 days [median viremia onset 33 days (range 5-74) & median viral load at 1st detection < 137 copies/mL (range < 137-245)] for a day 100 cumulative incidence of 83% (95%CI 67-92). Of 31 pts with both CMV & aGVHD, 15 developed viremia prior to & 16 after aGVHD onset. The median time from CMV detection to therapy initiation was 3 days (range 0-39). Treatment dosing, viremia vs disease & responses are shown (Figure). Induction dosing was given to one third of pts (n = 11). These pts started therapy later in their transplant course & predominantly received VALGAN. By day 100, just over half cleared viremia but none developed disease. Two-thirds of pts (n = 24) were started on maintenance dosing. They required therapy earlier post-CBT & most received FOS. 10 of these pts cleared viremia by day 100 although GI CMV disease developed in 1 pt after early therapy cessation. This pt was then successfully treated. Notably, half of the maintenance pts required escalation to induction due to persistent viremia in 10 or development of CMV pneumonia in 2 pts. The 2 pneumonia pts developed disease 26 & 12 days post-therapy initiation, respectively, & their peak viremias were 1,330 & 613 IU/ml, respectively. Both pts died of CMV & constituted 2/4 TRM deaths by day 100 in the study (other deaths were 1 DAH & 1 grade IV aGVHD). We then examined therapy toxicity in the first 100 days (Table). 4 pts received only FOS, 10 only GAN/ VALGAN, & 21 had courses of each. Therapy switches were due to toxicity, inadequate response, or convenience of oral VALGAN & therapy duration was highly variable according to infection severity, concurrent GVHD therapy, speed of viremia clearance & tolerance of drug toxicities. One-third of FOS pts & over half of GAN/ VALGAN pts had clinically significant toxicities. Conclusion: CMV infection is very frequent in adult seropositive CBT recipients & pre-CBT GAN is not effective prophylaxis. Early intensive monitoring permits early pre-emptive therapy which is effective in most pts. While maintenance dosing is effective in some, the development of lethal CMV pneumonia in 2 maintenance pts suggests dose escalation may be appropriate if rapid viremia eradication is not achieved. However, FOS/GAN/VALGAN toxicities are also significant. Ultimately, the optimal drug dosing to enhance efficacy but mitigate toxicity, how to predict pts at greatest risk of disease, appropriate therapy duration, & how to predict recurrence risk are not known. Improved CMV prophylaxis & therapy for allograft recipients including CBT pts are needed. Disclosures No relevant conflicts of interest to declare.


2010 ◽  
Vol 34 (8) ◽  
pp. S33-S33
Author(s):  
Wenchao Ou ◽  
Haifeng Chen ◽  
Yun Zhong ◽  
Benrong Liu ◽  
Keji Chen

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